Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 157,851 A→G F426L (TTC→CTC)  pcnB ← poly(A) polymerase I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913157,8510AG100.0% 429.6 / NA 110F426L (TTC→CTC) pcnBpoly(A) polymerase I
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (55/55);  total (55/55)

Only 100 of 113 total aligned reads displayed.

TATACGCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAACTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCTGACGAC  >  NC_000913/157717‑157982
                                                                                                                                      |                                                                                                                                   
tataCGCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCAc                                                                                                                                >  2:197014/1‑140 (MQ=255)
tataCGCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCAc                                                                                                                                >  2:2027334/1‑140 (MQ=255)
tataCGCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCAc                                                                                                                                >  2:1428015/1‑140 (MQ=255)
  taCGCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCAccc                                                                                                                              <  2:789715/140‑1 (MQ=255)
  taCGCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCAccc                                                                                                                              >  1:143804/1‑140 (MQ=255)
   aCGCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCAcccc                                                                                                                             <  2:1539117/140‑1 (MQ=255)
   aCGCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCAcccc                                                                                                                             <  2:1278900/140‑1 (MQ=255)
     gCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCccac                                                                                                                           >  2:712667/1‑140 (MQ=255)
       cACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCccacca                                                                                                                         >  1:1099300/1‑140 (MQ=255)
       cACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCccacca                                                                                                                         >  2:1927785/1‑140 (MQ=255)
       cACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCccacca                                                                                                                         >  2:472146/1‑140 (MQ=255)
          tGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCt                                                                                                                                   >  1:1723321/1‑127 (MQ=255)
          tGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCAttt                                                                                                                      >  2:437444/1‑140 (MQ=255)
          tGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCAttt                                                                                                                      >  1:187806/1‑140 (MQ=255)
          tGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCAttt                                                                                                                      >  2:1126288/1‑140 (MQ=255)
          tGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCAttt                                                                                                                      >  2:1001537/1‑140 (MQ=255)
            tCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTct                                                                                                                    >  2:933354/1‑139 (MQ=255)
            tCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCa                                                                                                                    >  2:1522643/1‑140 (MQ=255)
            tCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCa                                                                                                                    >  2:704931/1‑140 (MQ=255)
              aTGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCAcc                                                                                                                  <  2:1657025/140‑1 (MQ=255)
              aTGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCAcc                                                                                                                  <  1:992638/140‑1 (MQ=255)
               tGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCa                                                                                                                 >  2:1858357/1‑140 (MQ=255)
                 cGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGa                                                                                                               <  2:1977630/140‑1 (MQ=255)
                 cGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGa                                                                                                               <  2:2114575/140‑1 (MQ=255)
                 cGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGa                                                                                                               <  2:533012/140‑1 (MQ=255)
                 cGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGa                                                                                                               <  1:101106/140‑1 (MQ=255)
                 cGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGa                                                                                                               <  1:783499/140‑1 (MQ=255)
                 cGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGa                                                                                                               <  1:197014/140‑1 (MQ=255)
                     aCCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCt                                                                                                           <  1:802712/140‑1 (MQ=255)
                      cccTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTg                                                                                                          <  1:2069566/140‑1 (MQ=255)
                      cccTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTg                                                                                                          <  1:2027334/140‑1 (MQ=255)
                      cccTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTg                                                                                                          >  2:30545/1‑140 (MQ=255)
                      cccTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTg                                                                                                          >  2:1297389/1‑140 (MQ=255)
                      cccTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTg                                                                                                          >  1:1671259/1‑140 (MQ=255)
                      cccTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTg                                                                                                          <  1:544313/140‑1 (MQ=255)
                           acgacgTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGtt                                                                                                     <  2:187806/140‑1 (MQ=255)
                           acgacgTGGTGCGCGTTTGCGTGGACGACCAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCCTCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGtt                                                                                                     <  2:2089865/140‑1 (MQ=255)
                             gacgTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCa                                                                                                   <  1:1297389/140‑1 (MQ=255)
                              acgTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAg                                                                                                  >  2:596428/1‑140 (MQ=255)
                                gtggtgCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCg                                                                                                <  1:1522643/140‑1 (MQ=255)
                                gtggtgCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCg                                                                                                <  2:1099300/140‑1 (MQ=255)
                                gtggtgCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCg                                                                                                >  2:324038/1‑140 (MQ=255)
                                gtggtgCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCg                                                                                                <  1:324038/140‑1 (MQ=255)
                                  ggtgCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGtt                                                                                              >  2:1538381/1‑140 (MQ=255)
                                   gtgCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTa                                                                                             >  2:674678/1‑140 (MQ=255)
                                       gcgTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCt                                                                                         >  2:550280/1‑140 (MQ=255)
                                       gcgTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCt                                                                                         <  1:963548/140‑1 (MQ=255)
                                        cgTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTc                                                                                        >  1:1331394/1‑140 (MQ=255)
                                        cgTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTc                                                                                        >  1:988281/1‑140 (MQ=255)
                                          tttGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCaa                                                                                      >  2:2081308/1‑140 (MQ=255)
                                                tGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAg                                                                                <  1:2081308/140‑1 (MQ=255)
                                                   acgacgAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTc                                                                             <  1:1001537/140‑1 (MQ=255)
                                                   acgacgAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTc                                                                             <  1:432121/140‑1 (MQ=255)
                                                   acgacgAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTc                                                                             >  2:1182876/1‑140 (MQ=255)
                                                   acgacgAGTACGACGACGCGGCGAAGGTACTTCATCCAGCTCGATTAGCATCCCTTTTTCGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGATCAGCGTTACGCTCAACTTCAGCTc                                                                             >  1:513822/1‑140 (MQ=255)
                                                     gacgaGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGc                                                                           <  1:437444/140‑1 (MQ=255)
                                                      acgaGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCa                                                                          <  1:446328/140‑1 (MQ=255)
                                                      acgaGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCa                                                                          <  2:1331394/140‑1 (MQ=255)
                                                       cgaGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCaa                                                                         >  2:396624/1‑140 (MQ=255)
                                                              gacgacgCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAAc                                                                  <  1:1359241/140‑1 (MQ=255)
                                                                cgacgCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAg                                                                >  1:1763606/1‑140 (MQ=255)
                                                                  acgCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAAc                                                                  <  2:1197769/136‑1 (MQ=255)
                                                                  acgCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAAc                                                                  >  1:1197769/1‑136 (MQ=255)
                                                                   cgcgGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTc                                                             >  1:627308/1‑140 (MQ=255)
                                                                   cgcgGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTc                                                             >  2:232004/1‑140 (MQ=255)
                                                                        tGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAg                                                        <  1:1538381/140‑1 (MQ=255)
                                                                          aCGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGcc                                                      <  1:2064107/140‑1 (MQ=255)
                                                                            ggTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGc                                                    >  1:490945/1‑140 (MQ=255)
                                                                             gTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCa                                                   <  1:550280/140‑1 (MQ=255)
                                                                             gTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCa                                                   <  2:1962850/140‑1 (MQ=255)
                                                                               tcttcATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACg                                                 <  2:627308/140‑1 (MQ=255)
                                                                               tcttcATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACg                                                 <  1:2084435/140‑1 (MQ=255)
                                                                                      ccAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTa                                          >  1:1059811/1‑140 (MQ=255)
                                                                                         gCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGa                                       <  1:1428015/140‑1 (MQ=255)
                                                                                         gCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGa                                       <  1:596428/140‑1 (MQ=255)
                                                                                          cTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGAt                                      >  1:622510/1‑140 (MQ=255)
                                                                                          cTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGAt                                      >  1:1106200/1‑140 (MQ=255)
                                                                                          cTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGAt                                      >  2:2119271/1‑140 (MQ=255)
                                                                                          cTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGAt                                      >  1:1048622/1‑140 (MQ=255)
                                                                                          cTCGTTGAGCATCCCTTTTTGGTCTGGAGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGAt                                      >  1:1502495/1‑140 (MQ=255)
                                                                                           tCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATg                                     <  2:1763606/140‑1 (MQ=255)
                                                                                             gTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCt                                   >  2:1306856/1‑140 (MQ=255)
                                                                                               tGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTcc                                 <  1:985604/140‑1 (MQ=255)
                                                                                                gAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCca                                <  2:286423/140‑1 (MQ=255)
                                                                                                 aGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCcag                               <  2:516444/140‑1 (MQ=255)
                                                                                                          ttttGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCa                      <  1:1927785/140‑1 (MQ=255)
                                                                                                            ttGGTCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATg                    <  1:1619109/140‑1 (MQ=255)
                                                                                                                tCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATgcgct                >  2:51789/1‑139 (MQ=255)
                                                                                                                tCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGcgcg                >  2:279645/1‑140 (MQ=255)
                                                                                                                tCTGGTGGCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGcgcg                >  2:1807809/1‑140 (MQ=255)
                                                                                                                      ggCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTAcc          <  2:513822/140‑1 (MQ=255)
                                                                                                                      ggCGCGGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTAcc          <  1:396624/140‑1 (MQ=255)
                                                                                                                        cgcgGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCt        <  1:704931/140‑1 (MQ=255)
                                                                                                                        cgcgGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCt        <  2:790716/140‑1 (MQ=255)
                                                                                                                          cgGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCTga      <  1:402050/140‑1 (MQ=255)
                                                                                                                          cgGAAACCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCTga      >  1:1660322/1‑140 (MQ=255)
                                                                                                                             aaaCCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCTgacga   <  1:1182876/140‑1 (MQ=255)
                                                                                                                             aaaCCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCTgacga   <  1:2119271/140‑1 (MQ=255)
                                                                                                                             aaaCCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCTgacga   <  1:51789/140‑1 (MQ=255)
                                                                                                                              aaCCTGGAGCTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCTgacgac  <  1:1807809/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                   
TATACGCCACTGTCATGCGGTACCCTCACGACGTGGTGCGCGTTTGCGTGGACGACGAGTACGACGACGCGGTGACGGTTCTTCATCCAGCTCGTTGAGCATCCCTTTTTGGTCTGGTGGCGCGGAAACCTGGAACTCACCCCACCATTTCACCAGACGCTGCAGTTCAGCGTTACGCTCAACTTCAGCTCGCAAGGCCAACAGGTCATAAGCCGCACGGAACTTAGGATGCTCCAGCAGTTTCCATGCGCGTTTACCCTGACGAC  >  NC_000913/157717‑157982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A