Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	244,109	G→T	E189D (GAG→GAT)	lpcA →	D‑sedoheptulose 7‑phosphate isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	244,109	0	G	T	100.0%	329.3 / NA	95	E189D (GAG→GAT)	lpcA	D‑sedoheptulose 7‑phosphate isomerase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (54/41); total (54/41)

Only 100 of 101 total aligned reads displayed.

GACCGGTAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAGGCCGAATAAT  >  NC_000913/243974‑244243

gACCGGTAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATgg                                                                                                                                    <  1:1021407/140‑1 (MQ=255)

gACCGGTAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATgg                                                                                                                                    >  2:1041456/1‑140 (MQ=255)

gACCGGTAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATgg                                                                                                                                    <  1:516528/140‑1 (MQ=255)

  ccGGTAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGtt                                                                                                                                  >  2:927193/1‑140 (MQ=255)

   cGGTAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTta                                                                                                                                 <  2:321428/140‑1 (MQ=255)

     gTAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTtaag                                                                                                                               <  1:540630/140‑1 (MQ=255)

     gTAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTtaag                                                                                                                               <  2:538563/140‑1 (MQ=255)

      tAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTtaagt                                                                                                                              <  1:540096/140‑1 (MQ=255)

      tAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTtaagt                                                                                                                              <  2:585040/140‑1 (MQ=255)

      tAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTtaagt                                                                                                                              <  1:446990/140‑1 (MQ=255)

      tAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTtaagt                                                                                                                              <  1:1659196/140‑1 (MQ=255)

       aaaGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTtaagta                                                                                                                             >  1:1039415/1‑140 (MQ=255)

       aaaGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTtaagta                                                                                                                             >  2:1461049/1‑140 (MQ=255)

            cggcggCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCCTTCAGGAGATTCACATTTAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGGCt                                                                                                                        >  1:1041991/1‑140 (MQ=255)

             ggcggcAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTg                                                                                                                       >  2:2143487/1‑140 (MQ=255)

               cggcAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGc                                                                                                                     <  1:1977748/140‑1 (MQ=255)

               cggcAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGc                                                                                                                     >  1:1870169/1‑140 (MQ=255)

               cggcAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGc                                                                                                                     <  2:1816760/140‑1 (MQ=255)

               cggcAAAATGGCTGGCACGGCGGATATCGAAATTCGCGGACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCCCATTAAAGTGATCCATATCCTTATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGc                                                                                                                     >  2:1978022/1‑140 (MQ=255)

                   aaaaTGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCAATTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAg                                                                                                                 <  1:1961377/140‑1 (MQ=255)

                     aaTGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGc                                                                                                               <  1:127122/140‑1 (MQ=255)

                        ggctggcACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCgg                                                                                                            <  1:1376995/140‑1 (MQ=255)

                          ctggcACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGAt                                                                                                          <  1:927193/140‑1 (MQ=255)

                            ggcACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATaa                                                                                                        <  1:2141294/140‑1 (MQ=255)

                                 ggcggATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGt                                                                                                   >  2:1542651/1‑140 (MQ=255)

                                 ggcggATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGt                                                                                                   >  1:324505/1‑140 (MQ=255)

                                           gAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCa                                                                                         <  2:324505/140‑1 (MQ=255)

                                             aaTTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATc                                                                                       <  1:1461049/140‑1 (MQ=255)

                                                   cgTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAt                                                                                 <  1:1263472/140‑1 (MQ=255)

                                                   cgTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAt                                                                                 <  2:345425/140‑1 (MQ=255)

                                                          cACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcg                                                                          >  2:1524653/1‑140 (MQ=255)

                                                                  ttATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGTCGTTTACGCCGCATCCGGCATTTGTGCGctgatgcc                                                                  >  2:1548317/1‑140 (MQ=255)

                                                                   tATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcct                                                                 <  2:1039415/140‑1 (MQ=255)

                                                                     tGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctga                                                               >  2:2126253/1‑140 (MQ=255)

                                                                      gCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgat                                                              >  2:944336/1‑140 (MQ=255)

                                                                       ccGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatg                                                             >  2:388475/1‑140 (MQ=255)

                                                                       ccGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatg                                                             <  2:1870169/140‑1 (MQ=255)

                                                                       ccGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatg                                                             >  1:794109/1‑140 (MQ=255)

                                                                       ccGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGct                                                                        >  2:335865/1‑129 (MQ=255)

                                                                       ccGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGct                                                                        <  1:335865/129‑1 (MQ=255)

                                                                          aCCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGa                                                          >  1:1899499/1‑140 (MQ=255)

                                                                           ccGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc                                                         >  2:290528/1‑140 (MQ=255)

                                                                           ccGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc                                                         >  1:1366309/1‑140 (MQ=255)

                                                                           ccGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc                                                         >  2:1789545/1‑140 (MQ=255)

                                                                            cGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACg                                                        <  1:2143487/140‑1 (MQ=255)

                                                                            cGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACg                                                        >  1:1447865/1‑140 (MQ=255)

                                                                                ttCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGa                                                    <  1:2108379/140‑1 (MQ=255)

                                                                                ttCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGa                                                    <  1:230229/140‑1 (MQ=255)

                                                                                 tCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAc                                                   <  1:1542651/140‑1 (MQ=255)

                                                                                 tCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAc                                                   <  1:1757547/140‑1 (MQ=255)

                                                                                 tCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAc                                                   <  1:290528/140‑1 (MQ=255)

                                                                                        aTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCtt                                            <  2:1899499/140‑1 (MQ=255)

                                                                                        aTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCtt                                            <  2:80260/140‑1 (MQ=255)

                                                                                         ttCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCttt                                           >  2:1677236/1‑139 (MQ=255)

                                                                                          tCACATTAAAGTGATCCATATCCTGATCCAGCTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTAt                                          >  2:22513/1‑140 (MQ=255)

                                                                                           cacaTTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc                                         <  2:1366309/140‑1 (MQ=255)

                                                                                           cacaTTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc                                         <  1:331105/140‑1 (MQ=255)

                                                                                           cacaTTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc                                         >  1:854439/1‑140 (MQ=255)

                                                                                             caTTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCAt                                       <  1:944336/140‑1 (MQ=255)

                                                                                             caTTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCAt                                       >  2:442067/1‑140 (MQ=255)

                                                                                                        tCCATATCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATc                            >  2:1348470/1‑140 (MQ=255)

                                                                                                            tatCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTa                        >  2:1119559/1‑140 (MQ=255)

                                                                                                            tatCCTGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTa                        >  1:898625/1‑140 (MQ=255)

                                                                                                                 tGATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGTGACGCTGACGCGTCTTATGATGCCTACAAATCTGTACGCGa                   >  1:1791164/1‑140 (MQ=255)

                                                                                                                  gATCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGaa                  >  1:1505365/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:1282635/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:1696223/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:1329047/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:1684065/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  2:1766390/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  2:171071/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:207005/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  2:360819/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:1907352/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:978217/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:1246854/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:1836993/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  2:1245307/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGTTAAGCAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  2:1030144/1‑140 (MQ=255)

                                                                                                                   aTCCAGTTGATTGAAAAAGATATGGCTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAc                 >  1:1545931/1‑140 (MQ=255)

                                                                                                                    tCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAcc                <  1:1766390/140‑1 (MQ=255)

                                                                                                                    tCCAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAcc                >  2:908168/1‑140 (MQ=255)

                                                                                                                    accAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAAcc                <  2:1836993/139‑1 (MQ=255)

                                                                                                                      cAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGt              >  1:722954/1‑140 (MQ=255)

                                                                                                                      cAGTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGt              <  2:1633376/140‑1 (MQ=255)

                                                                                                                        gTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTat            >  2:545994/1‑139 (MQ=255)

                                                                                                                        gTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAg            >  1:747574/1‑140 (MQ=255)

                                                                                                                        gTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAg            >  2:327859/1‑140 (MQ=255)

                                                                                                                        gTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAg            <  1:1524653/140‑1 (MQ=255)

                                                                                                                        gTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAg            >  1:932283/1‑140 (MQ=255)

                                                                                                                        gTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAg            >  2:1469813/1‑140 (MQ=255)

                                                                                                                        gTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAg            >  1:1169271/1‑140 (MQ=255)

                                                                                                                        gTTGATTGAAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAg            >  2:1084689/1‑140 (MQ=255)

                                                                                                                         ttgattgaAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAgg           <  1:360819/140‑1 (MQ=255)

                                                                                                                         ttgattgaAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAgg           <  2:898625/140‑1 (MQ=255)

                                                                                                                              tgaAAAAGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAGGCCGaa      >  2:1687904/1‑140 (MQ=255)

                                                                                                                              tgaAAAAGATATAGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAGGCCGaa      <  1:2126253/140‑1 (MQ=255)

                                                                                                                                aaaaaGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAGGCCGaata    >  2:1646317/1‑140 (MQ=255)

                                                                                                                                aaaaaGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAGGCCGaata    >  2:1376392/1‑140 (MQ=255)

                                                                                                                                  aaaGATATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAGGCCGaataat  >  1:1896118/1‑140 (MQ=255)

GACCGGTAAAGACGGCGGCAAAATGGCTGGCACGGCGGATATCGAAATTCGCGTACCGCACTTTGGTTATGCCGACCGCATTCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAGGCCGAATAAT  >  NC_000913/243974‑244243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A