Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F48 I1 R1	62	93.4	3176452	99.2%	3151040	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	248,885	C→A	pseudogene (1186/1713 nt)	lfhA ←	flagellar system protein, promoterless fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	248,885	0	C	A	100.0%	456.0 / NA	127	pseudogene (1186/1713 nt)	lfhA	flagellar system protein, promoterless fragment
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (50/77); total (50/77)

Only 100 of 127 total aligned reads displayed.

TTCGTCACCGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATCACCTGAT  >  NC_000913/248752‑249019

ttCGTCACCGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGAcg                                                                                                                                  >  2:293390/1‑140 (MQ=255)

ttCGTCACCGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGAcg                                                                                                                                  >  2:1422929/1‑140 (MQ=255)

ttCGTCACCGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGAcg                                                                                                                                  >  2:1265386/1‑140 (MQ=255)

ttCGTCACCGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGCAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGAcg                                                                                                                                  >  1:1522026/1‑140 (MQ=255)

  cGTCACCGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGAcgcg                                                                                                                                >  2:1024472/1‑140 (MQ=255)

        cGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCg                                                                                                                          >  1:114367/1‑140 (MQ=255)

        cGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCg                                                                                                                          >  2:1110931/1‑140 (MQ=255)

         gTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGt                                                                                                                         <  2:740359/140‑1 (MQ=255)

         gTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGt                                                                                                                         >  2:1023306/1‑140 (MQ=255)

          tGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTc                                                                                                                        >  1:937543/1‑140 (MQ=255)

           gCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTcg                                                                                                                       >  1:1547597/1‑140 (MQ=255)

            cTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTcga                                                                                                                      <  1:1216010/140‑1 (MQ=255)

                 ggCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATa                                                                                                                 <  1:289406/140‑1 (MQ=255)

                 ggCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATa                                                                                                                 <  2:1247432/140‑1 (MQ=255)

                   cGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATaaa                                                                                                               <  1:44337/140‑1 (MQ=255)

                    gACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAAc                                                                                                              >  1:1266547/1‑140 (MQ=255)

                    gACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAAc                                                                                                              >  1:1249718/1‑140 (MQ=255)

                    gACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAAc                                                                                                              <  2:16624/140‑1 (MQ=255)

                    gACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAAc                                                                                                              >  2:502033/1‑140 (MQ=255)

                    gACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAAc                                                                                                              >  2:901224/1‑140 (MQ=255)

                    gACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAAc                                                                                                              <  1:352231/140‑1 (MQ=255)

                      ccAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACgg                                                                                                            >  1:25140/1‑140 (MQ=255)

                       cAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGt                                                                                                           >  2:1417876/1‑140 (MQ=255)

                         gCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTa                                                                                                         >  2:1174178/1‑140 (MQ=255)

                         gCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTa                                                                                                         <  1:54300/140‑1 (MQ=255)

                          cACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTAt                                                                                                        >  1:143195/1‑140 (MQ=255)

                             ggTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCa                                                                                                     <  2:1547597/140‑1 (MQ=255)

                              gTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCaa                                                                                                    <  2:114367/140‑1 (MQ=255)

                              gTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCaa                                                                                                    <  2:506390/140‑1 (MQ=255)

                                 gCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTg                                                                                                 <  2:1238768/140‑1 (MQ=255)

                                    aTGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGt                                                                                              <  1:1023306/140‑1 (MQ=255)

                                    aTGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGt                                                                                              <  1:1150421/140‑1 (MQ=255)

                                      ggTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTaa                                                                                            <  2:872065/140‑1 (MQ=255)

                                       gTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAat                                                                                           <  2:1234638/140‑1 (MQ=255)

                                       gTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAat                                                                                           <  2:39150/140‑1 (MQ=255)

                                           cGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATatca                                                                                       >  1:1003153/1‑140 (MQ=255)

                                            gATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATatcat                                                                                      <  2:1277301/140‑1 (MQ=255)

                                            gATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATatcat                                                                                      <  1:582153/140‑1 (MQ=255)

                                            gATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATatcat                                                                                      <  2:692891/140‑1 (MQ=255)

                                            gATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATatcat                                                                                      <  1:293390/140‑1 (MQ=255)

                                              tatCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATatcatct                                                                                    >  2:154624/1‑139 (MQ=255)

                                                 cgcgCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATat                                                                                 >  2:1298579/1‑139 (MQ=255)

                                                 cgcgCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAg                                                                                 >  1:1112825/1‑140 (MQ=255)

                                                 cgcgCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAg                                                                                 >  1:1422465/1‑140 (MQ=255)

                                                 cgcgCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAg                                                                                 >  2:317235/1‑140 (MQ=255)

                                                 cgcgCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAg                                                                                 <  2:700241/140‑1 (MQ=255)

                                                   cgcAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGtt                                                                               >  1:804416/1‑140 (MQ=255)

                                                      aGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTaaa                                                                            <  2:327225/140‑1 (MQ=255)

                                                      aGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTaaa                                                                            <  1:152880/140‑1 (MQ=255)

                                                         gAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaa                                                                         <  2:1249718/140‑1 (MQ=255)

                                                         gAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaa                                                                         <  1:1149181/140‑1 (MQ=255)

                                                         gAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaa                                                                         <  1:1422929/140‑1 (MQ=255)

                                                         gAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaa                                                                         <  2:334445/140‑1 (MQ=255)

                                                            aCGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATc                                                                      <  2:1522026/140‑1 (MQ=255)

                                                            aCGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATc                                                                      <  2:876003/140‑1 (MQ=255)

                                                                  tCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAat                                                                >  2:1219035/1‑140 (MQ=255)

                                                                  tCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAat                                                                >  1:46488/1‑140 (MQ=255)

                                                                   cGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAata                                                               <  2:1423080/140‑1 (MQ=255)

                                                                   cGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAata                                                               <  2:1422465/140‑1 (MQ=255)

                                                                    ggTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAatat                                                              >  1:203548/1‑140 (MQ=255)

                                                                    ggTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAatat                                                              >  1:250546/1‑140 (MQ=255)

                                                                      tCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAg                                                            <  2:610542/140‑1 (MQ=255)

                                                                       cagcagCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGc                                                           <  2:1005896/140‑1 (MQ=255)

                                                                          cagcGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTgc                                                        >  2:1351997/1‑140 (MQ=255)

                                                                             cgcCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGATTATAGCTGCGca                                                     <  2:235038/140‑1 (MQ=255)

                                                                             cgcCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGca                                                     <  1:1110931/140‑1 (MQ=255)

                                                                               cccGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGcaca                                                   >  1:1373563/1‑140 (MQ=255)

                                                                               cccGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGcaca                                                   >  1:710753/1‑140 (MQ=255)

                                                                               cccGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGcaca                                                   >  2:1126709/1‑140 (MQ=255)

                                                                                ccGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACaa                                                  >  1:666783/1‑140 (MQ=255)

                                                                                    tACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCtt                                              >  1:1343393/1‑140 (MQ=255)

                                                                                     acacTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTa                                             <  1:339283/140‑1 (MQ=255)

                                                                                       acTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTAtt                                           <  2:1266547/140‑1 (MQ=255)

                                                                                              gCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATgg                                    >  1:912964/1‑140 (MQ=255)

                                                                                               cAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATggg                                   <  2:1545841/140‑1 (MQ=255)

                                                                                                aaCTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGt                                  <  2:250546/140‑1 (MQ=255)

                                                                                                 aCTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTa                                 >  1:627961/1‑140 (MQ=255)

                                                                                                 aCTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTa                                 <  2:143195/140‑1 (MQ=255)

                                                                                                  cTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAg                                >  1:1364359/1‑140 (MQ=255)

                                                                                                   tGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGc                               >  2:1526647/1‑140 (MQ=255)

                                                                                                           aTTGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGc                       >  2:767797/1‑140 (MQ=255)

                                                                                                             tGAGCGCCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTg                     <  1:154624/140‑1 (MQ=255)

                                                                                                                gcgcCGCGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGgcg                  <  1:502033/140‑1 (MQ=255)

                                                                                                                 ggccgcGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGgcgc                 <  2:1225060/139‑1 (MQ=255)

                                                                                                                 cgccgcGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGgcgc                 <  1:869941/140‑1 (MQ=255)

                                                                                                                 cgccgcGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGgcgc                 <  1:1464796/140‑1 (MQ=255)

                                                                                                                 cgccgcGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGgcgc                 <  2:804416/140‑1 (MQ=255)

                                                                                                                 agccgcGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGgcgc                 <  2:710753/139‑1 (MQ=255)

                                                                                                                 agccgcGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGgcgc                 <  2:1373563/139‑1 (MQ=255)

                                                                                                                   ccgcGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTg               >  1:99475/1‑140 (MQ=255)

                                                                                                                   ccgcGCTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTg               >  1:770193/1‑140 (MQ=255)

                                                                                                                        cTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCgtt          <  1:91548/140‑3 (MQ=255)

                                                                                                                        cTCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGAt          <  2:1309977/140‑1 (MQ=255)

                                                                                                                         tCAAATCTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATc         <  1:1219035/140‑1 (MQ=255)

                                                                                                                               cTTCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATCACCTGa   <  2:203548/140‑1 (MQ=255)

                                                                                                                               attCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATCACCTGa   <  2:119254/139‑1 (MQ=255)

                                                                                                                                ttCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt  <  1:1126709/140‑1 (MQ=255)

                                                                                                                                ttCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt  <  2:1134768/140‑1 (MQ=255)

                                                                                                                                ttCCGACAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATCACCTGAt  <  2:770193/140‑1 (MQ=255)

                                                                                                                                ttCCGACAGACGCGGTGCCGTCGACGATAAAAGGTTATGCAAATGCGTAATAACATCATAGTTAAACAAATCAGGAACATAGCTACGCACAATCTTATTTACATGGGTAGCGATCCCGCTGGCGCTGTCGATAACCTGAt  <  2:1494248/140‑1 (MQ=255)

TTCGTCACCGTGCTACTGGCGACCAGCACGGTGGCGATGGTGACGATATCGCGCAGGGAAACGCCTTCGGTCAGCAGCGCCCGGTACACTTTCAGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAATCAGGAATATAGCTGCGCACAATCTTATTTACATGGGTAGCGATCACGCTGGCGCTGTCGATCACCTGAT  >  NC_000913/248752‑249019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A