Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	269,189	G→T	intergenic (‑229/+100)	ykfA ← / ← perR	CP4‑6 prophage; putative GTP‑binding protein YkfA/putative transcriptional regulator PerR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	269,189	0	G	T	100.0%	515.5 / NA	150	intergenic (‑229/+100)	ykfA/perR	CP4‑6 prophage; putative GTP‑binding protein YkfA/putative transcriptional regulator PerR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (86/64); total (86/64)

Only 100 of 154 total aligned reads displayed.

TTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCAGCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGAGTTCATTCAG  >  NC_000913/269055‑269321

     aaTCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCg                                                                                                                            <  2:1381933/140‑1 (MQ=255)

            tGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCcgc                                                                                                                     >  2:1210956/1‑140 (MQ=255)

            tGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCcgc                                                                                                                     >  2:217728/1‑140 (MQ=255)

            tGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCcgc                                                                                                                     >  2:1664793/1‑140 (MQ=255)

                 ttGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCa                                                                                                                <  1:1169128/140‑1 (MQ=255)

                  tGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCaa                                                                                                               <  2:183513/140‑1 (MQ=255)

                   gAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCaaa                                                                                                              >  2:1954002/1‑140 (MQ=255)

                   gAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCaa                                                                                                               <  1:1246634/139‑1 (MQ=255)

                     ggCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCATAAg                                                                                                            >  1:136349/1‑140 (MQ=255)

                         gCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTgag                                                                                                        <  1:37288/140‑1 (MQ=255)

                            gcgcGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGc                                                                                                     <  2:954764/140‑1 (MQ=255)

                               cgACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCtt                                                                                                  >  2:573245/1‑140 (MQ=255)

                                 aCTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTca                                                                                                <  2:8562/140‑1 (MQ=255)

                                     ctgGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACaaa                                                                                            >  1:354080/1‑140 (MQ=255)

                                      tgGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACaaaa                                                                                           <  2:877650/140‑1 (MQ=255)

                                        gCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAaata                                                                                         <  2:354080/140‑1 (MQ=255)

                                        gCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAaata                                                                                         <  1:1210956/140‑1 (MQ=255)

                                         cTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAaataa                                                                                        <  2:690771/140‑1 (MQ=255)

                                           aaGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAAAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATg                                                                                      <  2:1280579/139‑1 (MQ=255)

                                             ggCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCt                                                                                    <  2:614232/140‑1 (MQ=255)

                                             ggCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCt                                                                                    <  1:55967/140‑1 (MQ=255)

                                                        aGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCtt                                                                                   >  2:703612/1‑130 (MQ=255)

                                                        aGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAg                                                                         >  1:750222/1‑140 (MQ=255)

                                                        aGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAg                                                                         >  1:1905979/1‑140 (MQ=255)

                                                        aGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAg                                                                         >  1:1877790/1‑140 (MQ=255)

                                                        aGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAg                                                                         >  1:1813519/1‑140 (MQ=255)

                                                        aGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAg                                                                         <  1:668953/140‑1 (MQ=255)

                                                          ttATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGtt                                                                       <  2:1249589/140‑1 (MQ=255)

                                                          ttATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGtt                                                                       <  1:1630875/140‑1 (MQ=255)

                                                                 agcagcATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGa                                                                <  2:1561725/140‑1 (MQ=255)

                                                                   cagcaTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAAt                                                              >  2:1360074/1‑140 (MQ=255)

                                                                   cagcaTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAAt                                                              >  2:617036/1‑140 (MQ=255)

                                                                   cagcaTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAAt                                                              >  1:20944/1‑140 (MQ=255)

                                                                   cagcaTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAAt                                                              >  1:1607656/1‑140 (MQ=255)

                                                                   cagcaTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAAt                                                              >  2:879981/1‑140 (MQ=255)

                                                                    agcaTTTACTAACAGGGCTTTATTGAGAGTATGATCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAAtt                                                             >  1:611742/1‑140 (MQ=255)

                                                                    agcaTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAAtt                                                             >  1:1357015/1‑140 (MQ=255)

                                                                    agcaTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAAtt                                                             >  2:881884/1‑140 (MQ=255)

                                                                     gcaTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTc                                                            >  1:50917/1‑140 (MQ=255)

                                                                     gcaTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTc                                                            >  1:715892/1‑140 (MQ=255)

                                                                      caTTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCa                                                           <  1:1439977/140‑1 (MQ=255)

                                                                        tttACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCaga                                                         >  2:1907509/1‑140 (MQ=255)

                                                                        tttACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCaga                                                         >  2:1165676/1‑140 (MQ=255)

                                                                        tttACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCaga                                                         >  1:1771002/1‑140 (MQ=255)

                                                                          tACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGc                                                       <  1:160779/140‑1 (MQ=255)

                                                                          tACTAACAGGAATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTAGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGc                                                       <  1:705662/140‑1 (MQ=255)

                                                                           aCTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGcc                                                      >  1:463372/1‑140 (MQ=255)

                                                                            cTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGccc                                                     <  2:1386079/140‑1 (MQ=255)

                                                                               aCAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGa                                                  <  2:280253/140‑1 (MQ=255)

                                                                                cAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGAt                                                 <  1:1280475/140‑1 (MQ=255)

                                                                                 aGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGAtt                                                <  2:1813519/140‑1 (MQ=255)

                                                                                   ggATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTaa                                              >  2:2009926/1‑140 (MQ=255)

                                                                                   ggATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTaa                                              >  2:652292/1‑140 (MQ=255)

                                                                                   ggATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTaa                                              >  2:682979/1‑140 (MQ=255)

                                                                                    gATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAAt                                             <  1:596367/140‑1 (MQ=255)

                                                                                     aTTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAAtg                                            >  1:1114666/1‑140 (MQ=255)

                                                                                     aTTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAAtg                                            >  1:2053626/1‑140 (MQ=255)

                                                                                     aTTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAAtg                                            <  2:1137289/140‑1 (MQ=255)

                                                                                     aTTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAAtg                                            <  1:2084694/140‑1 (MQ=255)

                                                                                     aTTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCACGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCACGATTAAtg                                            <  2:378020/140‑1 (MQ=255)

                                                                                       ttATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAAtgtg                                          <  2:1771002/140‑1 (MQ=255)

                                                                                       ttATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAAtgtg                                          <  1:2131763/140‑1 (MQ=255)

                                                                                         aTTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGaa                                        >  2:2049831/1‑140 (MQ=255)

                                                                                         aTTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGaa                                        <  1:1727606/140‑1 (MQ=255)

                                                                                           tGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAAt                                             <  1:2067812/133‑1 (MQ=255)

                                                                                           tGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAAt                                             >  2:2067812/1‑133 (MQ=255)

                                                                                           tGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACa                                      >  1:1645723/1‑140 (MQ=255)

                                                                                           tGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACa                                      >  1:825436/1‑140 (MQ=255)

                                                                                               agTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGAt                                  >  1:1700033/1‑140 (MQ=255)

                                                                                               agTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGAt                                  >  2:1044178/1‑140 (MQ=255)

                                                                                               agTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGAt                                  >  2:1012476/1‑140 (MQ=255)

                                                                                                   tGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAAc                              <  2:825436/140‑1 (MQ=255)

                                                                                                   tGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAAc                              <  2:715892/140‑1 (MQ=255)

                                                                                                   tGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAAc                              <  2:50917/140‑1 (MQ=255)

                                                                                                   tGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAAc                              >  2:1038947/1‑140 (MQ=255)

                                                                                                   tGAGCCGCCGTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAAc                              <  1:682979/140‑1 (MQ=255)

                                                                                                         gccgTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAAttt                        >  1:1383700/1‑140 (MQ=255)

                                                                                                           cgTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTa                      >  2:516662/1‑140 (MQ=255)

                                                                                                           cgTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTa                      >  1:7457/1‑140 (MQ=255)

                                                                                                            gTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTAc                     <  2:1357015/140‑1 (MQ=255)

                                                                                                            gTGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTAc                     <  1:2009926/140‑1 (MQ=255)

                                                                                                             tGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTAcc                    >  2:1695674/1‑140 (MQ=255)

                                                                                                             tGATACACCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTAcc                    <  2:463372/140‑1 (MQ=255)

                                                                                                                  cacCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGAt               <  2:392700/140‑1 (MQ=255)

                                                                                                                  cacCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGAt               <  1:1038947/140‑1 (MQ=255)

                                                                                                                  cacCTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGAt               <  1:377882/140‑1 (MQ=255)

                                                                                                                  aacCATAAAATCTCAACCCATCAAAGTCTCGGAGCCGCCAGCAAAAGTGAGAGTCTTCACAAAATAATGCTTATTAATAAAATTACTTTGAATTCAGAGCGCCGATTAATGTGAGCATGATCAACGAATTTTACCCAGAt               <  2:2022738/139‑1 (MQ=255)

                                                                                                                    ccTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTg             <  1:1033065/140‑1 (MQ=255)

                                                                                                                     cTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGa            >  1:919597/1‑140 (MQ=255)

                                                                                                                     cTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGa            >  2:608235/1‑140 (MQ=255)

                                                                                                                     cTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGa            >  1:273089/1‑140 (MQ=255)

                                                                                                                     cTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGa            >  1:2122058/1‑140 (MQ=255)

                                                                                                                     cTTAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGa            >  2:1762620/1‑140 (MQ=255)

                                                                                                                       tAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGAGt          >  2:801275/1‑140 (MQ=255)

                                                                                                                       tAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGAGt          >  2:1186567/1‑140 (MQ=255)

                                                                                                                       tAAAATCTCAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGAGt          >  2:40843/1‑140 (MQ=255)

                                                                                                                             ctcAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGAGttcattc    <  1:1664793/140‑1 (MQ=255)

                                                                                                                               cAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGAGTTCATTCAg  >  1:184722/1‑140 (MQ=255)

                                                                                                                               cAACCCATCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGAGTTCATTCAg  >  1:1480626/1‑140 (MQ=255)

                                                                                                                               cAACCCATCAAAGTTTCGGAGCCGCGAACAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGAGTTCATTCAg  >  1:10145/1‑140 (MQ=255)

TTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCAGCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTTACCCAGATTGAGTTCATTCAG  >  NC_000913/269055‑269321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A