Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	269,754	G→T	L143L (CTC→CTA)	perR ←	putative transcriptional regulator PerR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	269,754	0	G	T	100.0%	390.1 / NA	112	L143L (CTC→CTA)	perR	putative transcriptional regulator PerR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (54/58); total (54/58)

Only 100 of 113 total aligned reads displayed.

CAATGTCAACGCATAGAGATCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCGAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTGCAGTATGAA  >  NC_000913/269619‑269890

cAATGTCAACGCATAGAGATCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGAt                                                                                                                                      <  1:1902445/140‑1 (MQ=255)

       aaCGCATAGAGATCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAatc                                                                                                                               >  1:798429/1‑140 (MQ=255)

         cGCATAGAGATCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAatcat                                                                                                                             >  1:660152/1‑140 (MQ=255)

            aTAGAGATCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCt                                                                                                                          >  1:1695762/1‑140 (MQ=255)

             tAGAGATCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCtt                                                                                                                         >  2:161983/1‑139 (MQ=255)

             tAGAGATCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCtt                                                                                                                         >  2:1424155/1‑139 (MQ=255)

             tAGAGATCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTg                                                                                                                         >  1:1496195/1‑140 (MQ=255)

                agaTCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTc                                                                                                                      >  2:163571/1‑140 (MQ=255)

                 gaTCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCa                                                                                                                     >  1:1281025/1‑140 (MQ=255)

                    ccTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCaaaa                                                                                                                  <  1:132599/140‑1 (MQ=255)

                    ccTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCaaaa                                                                                                                  <  2:875048/140‑1 (MQ=255)

                    ccTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCaaaa                                                                                                                  <  2:1496195/140‑1 (MQ=255)

                    ccTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCaaaa                                                                                                                  <  2:675055/140‑1 (MQ=255)

                    ccTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCaaaa                                                                                                                  <  1:1535807/140‑1 (MQ=255)

                    ccTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCaaaa                                                                                                                  <  1:1587577/140‑1 (MQ=255)

                    ccTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCaaaa                                                                                                                  >  2:901799/1‑140 (MQ=255)

                    ccTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCaaaa                                                                                                                  <  2:1385920/140‑1 (MQ=255)

                    ccTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCaaaa                                                                                                                  <  2:1846362/140‑1 (MQ=255)

                     ctctGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAAc                                                                                                                 >  2:1296090/1‑140 (MQ=255)

                     ctctGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAAc                                                                                                                 >  2:583105/1‑140 (MQ=255)

                      tctGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACGCAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACg                                                                                                                <  2:594139/140‑1 (MQ=255)

                        tGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTg                                                                                                              <  1:282373/140‑1 (MQ=255)

                         ggTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGc                                                                                                             <  1:901799/140‑1 (MQ=255)

                         ggTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGc                                                                                                             <  1:552205/140‑1 (MQ=255)

                          gTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATcc                                                                                                                           >  1:43130/1‑125 (MQ=255)

                          gTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATcc                                                                                                                           <  2:43130/125‑1 (MQ=255)

                          gTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCa                                                                                                            >  2:940744/1‑140 (MQ=255)

                             tCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCatat                                                                                                         >  1:1514767/1‑140 (MQ=255)

                             tCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCatat                                                                                                         >  1:1027987/1‑140 (MQ=255)

                              cTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATAtt                                                                                                        <  1:888988/140‑1 (MQ=255)

                               tttAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGc                                                                                                             >  2:1125751/1‑134 (MQ=255)

                               tttAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGc                                                                                                             <  1:1125751/134‑1 (MQ=255)

                               tttAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTc                                                                                                       <  1:787402/140‑1 (MQ=255)

                                   gCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCtgtg                                                                                                   <  1:499499/140‑1 (MQ=255)

                                    ccGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTgc                                                                                                  >  1:1465106/1‑140 (MQ=255)

                                       cTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTgctgg                                                                                               >  2:380114/1‑140 (MQ=255)

                                           gCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGa                                                                                           <  1:380114/140‑1 (MQ=255)

                                           gCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGa                                                                                           <  1:583105/140‑1 (MQ=255)

                                           gCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGa                                                                                           <  2:1947752/140‑1 (MQ=255)

                                           gCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGa                                                                                           <  1:161983/140‑1 (MQ=255)

                                           accAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGa                                                                                           <  2:1695762/139‑1 (MQ=255)

                                                 tGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCg                                                                                     <  1:1042303/140‑1 (MQ=255)

                                                         acacAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGa                                                                             <  2:896544/140‑1 (MQ=255)

                                                          cacaGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGa                                                                                           <  2:1657060/125‑1 (MQ=255)

                                                          cacaGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGa                                                                                           >  1:1657060/1‑125 (MQ=255)

                                                          cacaGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGAt                                                                            >  2:821478/1‑140 (MQ=255)

                                                          cacaGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGAt                                                                            >  1:1928713/1‑140 (MQ=255)

                                                          cacaGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGAt                                                                            >  2:588206/1‑140 (MQ=255)

                                                             aGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCt                                                                         >  2:425240/1‑140 (MQ=255)

                                                              gTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCtt                                                                        <  2:2099897/140‑1 (MQ=255)

                                                              gTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCtt                                                                        >  2:41081/1‑140 (MQ=255)

                                                                     aaGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTtct                                                                 <  1:940744/140‑1 (MQ=255)

                                                                     aaGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTtct                                                                 <  2:2063841/140‑1 (MQ=255)

                                                                     aaGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTtct                                                                 <  2:1248048/140‑1 (MQ=255)

                                                                       gTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCa                                                               >  2:1400994/1‑140 (MQ=255)

                                                                           ttcAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGtt                                                           >  2:199305/1‑139 (MQ=255)

                                                                           ttcAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGtt                                                           >  2:337238/1‑139 (MQ=255)

                                                                              aaCAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGa                                                        <  2:1281025/140‑1 (MQ=255)

                                                                               aCAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGaa                                                       <  2:798429/140‑1 (MQ=255)

                                                                               aCAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGaa                                                       <  1:1296090/140‑1 (MQ=255)

                                                                                cAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAAc                                                      >  1:610640/1‑140 (MQ=255)

                                                                                   cAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTa                                                   >  2:84856/1‑140 (MQ=255)

                                                                                       cGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCaa                                               >  1:551682/1‑140 (MQ=255)

                                                                                           aTCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACg                                           <  2:1514767/140‑1 (MQ=255)

                                                                                                ctcATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTa                                      >  1:1765048/1‑140 (MQ=255)

                                                                                                ctcATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTa                                      >  1:34697/1‑140 (MQ=255)

                                                                                                ctcATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTa                                      <  1:337238/140‑1 (MQ=255)

                                                                                                 tcATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTaa                                     <  1:992276/140‑1 (MQ=255)

                                                                                                     aGGGTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGc                                 >  2:74972/1‑140 (MQ=255)

                                                                                                       ggTGATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGcct                               >  2:1818933/1‑139 (MQ=255)

                                                                                                          gATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTg                            <  2:481128/140‑1 (MQ=255)

                                                                                                          gATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTg                            >  2:1218390/1‑140 (MQ=255)

                                                                                                          gATGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTg                            <  1:74972/140‑1 (MQ=255)

                                                                                                           aTGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCGTCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGa                           <  1:2055978/140‑1 (MQ=255)

                                                                                                           aTGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCGTCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGa                           >  2:2055978/1‑140 (MQ=255)

                                                                                                           aTGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGa                           <  1:199305/140‑1 (MQ=255)

                                                                                                           aTGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGa                           >  1:6281/1‑140 (MQ=255)

                                                                                                           aTGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGa                           >  2:1130593/1‑140 (MQ=255)

                                                                                                           aTGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCGCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGa                           >  1:795272/1‑140 (MQ=255)

                                                                                                            tGGGCGGGGTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGAt                          <  2:1928713/140‑1 (MQ=255)

                                                                                                                  gggTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCaa                    >  2:1924348/1‑140 (MQ=255)

                                                                                                                  gggTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCaa                    >  1:985379/1‑140 (MQ=255)

                                                                                                                   ggTTCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCaaa                   >  1:33254/1‑140 (MQ=255)

                                                                                                                      tCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACt                <  1:1218390/140‑1 (MQ=255)

                                                                                                                      tCACCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGATTGGGTTCTCAAGTATGAACTTACCAACACGTGGTAAAAGCCATTGATGGGAAAAACt                <  1:1818933/140‑1 (MQ=255)

                                                                                                                        aCCGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCg              <  2:660152/140‑1 (MQ=255)

                                                                                                                         ccGTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCgg             <  2:1027987/140‑1 (MQ=255)

                                                                                                                           gTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTg           <  2:610640/140‑1 (MQ=255)

                                                                                                                           gTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTg           <  1:821478/140‑1 (MQ=255)

                                                                                                                           gTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTg           <  2:6281/140‑1 (MQ=255)

                                                                                                                           gTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTg           <  1:1585555/140‑1 (MQ=255)

                                                                                                                           gTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTg           <  1:425240/140‑1 (MQ=255)

                                                                                                                           gTAGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTg           <  2:1465106/140‑1 (MQ=255)

                                                                                                                             aGACTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTGCa         >  1:838262/1‑140 (MQ=255)

                                                                                                                               aCTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTGCAGt       >  1:394624/1‑140 (MQ=255)

                                                                                                                               aCTATATCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTGCAGt       >  2:1579383/1‑140 (MQ=255)

                                                                                                                                   tatCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTGCAGTATGa   <  1:1523133/140‑1 (MQ=255)

                                                                                                                                   tatCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTGCAGTATGa   >  1:1129746/1‑140 (MQ=255)

                                                                                                                                    atCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTGCAGTATGaa  >  2:1396519/1‑140 (MQ=255)

                                                                                                                                    atCTAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTGCAGTATGaa  >  1:351322/1‑140 (MQ=255)

CAATGTCAACGCATAGAGATCCTCTGGTTTCTTTAGCCGCTCAGCCAGTTGGGGAGAACACAGTGGCGTAAGTTCTTCAACAGCAAGCGGGATCTTCTCATAGGGTGATGGGCGGGGTTCACCGTAGACTATATCGAGATCAAAATCATCCTGTTCAAAACGTGCATATTCTGTGCTGGCTGAAAGTCGCAGATCGATGCTTGGGTTCTCACGTATGAACTTACCAAGACGTGGTAAAAGCCATTGATGGGCAAAACTCGGTGCAGTATGAA  >  NC_000913/269619‑269890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A