Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	271,571	G→T	R323R (CGG→CGT)	insI‑1 →	IS30 transposase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	271,571	0	G	T	99.2%	280.9 / ‑6.5	124	R323R (CGG→CGT)	insI‑1	IS30 transposase
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (59/64); total (60/64)
Fisher's exact test for biased strand distribution p-value = 4.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 125 total aligned reads displayed.

CGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAG  >  NC_000913/271450‑271703

cGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACa                                                                                                                    >  2:2031165/1‑140 (MQ=17)

   cAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAAt                                                                                                                 >  2:1060494/1‑140 (MQ=17)

    aGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATg                                                                                                                >  1:1720764/1‑140 (MQ=17)

     gAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATgg                                                                                                               >  1:484632/1‑140 (MQ=17)

        cTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCt                                                                                                            >  1:1805679/1‑140 (MQ=17)

          cAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTaa                                                                                                          <  1:2031165/140‑1 (MQ=17)

          cAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTaa                                                                                                          >  1:1621116/1‑140 (MQ=17)

          aaGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTaa                                                                                                          <  2:940023/139‑1 (MQ=17)

            gAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAAtt                                                                                                        <  1:775357/140‑1 (MQ=18)

            aaaaaTCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAAtt                                                                                                        <  2:852931/139‑1 (MQ=17)

               aaTCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCgg                                                                                                     <  1:1357666/140‑1 (MQ=17)

                aTCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGc                                                                                                    <  1:956806/140‑1 (MQ=17)

                   aCTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGt                                                                                                 >  2:1433758/1‑140 (MQ=17)

                          tGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTaa                                                                                                          >  1:365252/1‑124 (MQ=17)

                          tGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTaa                                                                                                          <  2:365252/124‑1 (MQ=17)

                              aCAGAGGGATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTaaa                                                                                      <  1:1544687/140‑1 (MQ=16)

                              aCAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTaaa                                                                                      <  2:933418/140‑1 (MQ=17)

                              aCAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTaaa                                                                                      <  2:1720764/140‑1 (MQ=17)

                                 gagGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAg                                                                                   >  1:829855/1‑140 (MQ=17)

                                 gagGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAg                                                                                   >  1:1600877/1‑140 (MQ=17)

                                  agGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGa                                                                                  >  2:391895/1‑140 (MQ=17)

                                  agGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGa                                                                                  >  1:622064/1‑140 (MQ=17)

                                   ggAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGAc                                                                                 <  2:623425/140‑1 (MQ=17)

                                   ggAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGAc                                                                                 >  2:1881683/1‑140 (MQ=17)

                                   ggAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGAc                                                                                 >  1:2110581/1‑140 (MQ=17)

                                   ggAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGAc                                                                                 >  1:1239854/1‑140 (MQ=17)

                                   ggAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGAc                                                                                 <  1:1476758/140‑1 (MQ=18)

                                   ggAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGAc                                                                                 <  2:525561/140‑1 (MQ=17)

                                       tGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGt                                                                             >  1:537909/1‑140 (MQ=17)

                                       tGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTGCTGCGATCCGCAGAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGt                                                                             >  2:1430708/1‑140 (MQ=17)

                                        ggAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTc                                                                            <  1:1433758/140‑1 (MQ=18)

                                          aaCTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTGCTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCtt                                                                          <  1:1310700/140‑1 (MQ=17)

                                          aaCTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCtt                                                                          <  1:1881683/140‑1 (MQ=17)

                                          aaCTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCtt                                                                          <  1:1556474/140‑1 (MQ=17)

                                          aaCTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGCTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCtt                                                                          <  2:651280/140‑1 (MQ=12)

                                            cTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGc                                                                        >  1:2108107/1‑140 (MQ=17)

                                            cTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGc                                                                        <  1:702015/140‑1 (MQ=17)

                                            atGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGc                                                                        <  2:1860164/139‑1 (MQ=18)

                                             tGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGcc                                                                       <  1:1694846/140‑1 (MQ=18)

                                              ggCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGccc                                                                      >  2:1053934/1‑140 (MQ=17)

                                              ggCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGc                                                                        <  1:56766/138‑1 (MQ=17)

                                              ggCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGc                                                                        >  2:56766/1‑138 (MQ=17)

                                               gCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa                                                                     >  2:1474157/1‑140 (MQ=17)

                                               gCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa                                                                     >  2:1730919/1‑140 (MQ=17)

                                               gCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa                                                                     >  2:902814/1‑140 (MQ=17)

                                               gCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa                                                                     >  1:1855508/1‑140 (MQ=17)

                                               gCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa                                                                     >  2:1014306/1‑140 (MQ=17)

                                               gCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa                                                                     >  2:619402/1‑140 (MQ=17)

                                                 cAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAat                                                                   <  2:1247106/140‑1 (MQ=18)

                                                    aCATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAAtata                                                                >  1:838420/1‑140 (MQ=17)

                                                    aCATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAAtata                                                                <  2:1881990/140‑1 (MQ=18)

                                                     cATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTG‑CCAATATACt                                                              <  1:2134781/140‑1 (MQ=12)

                                                     aaTCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTG‑CCAATATACt                                                              <  1:32964/139‑1 (MQ=12)

                                                      aTCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACt                                                              <  2:1600877/140‑1 (MQ=17)

                                                         tAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCaa                                                           >  1:1219479/1‑140 (MQ=17)

                                                          aGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAAc                                                          <  1:1474157/140‑1 (MQ=17)

                                                           gAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACa                                                         <  1:1981995/140‑1 (MQ=17)

                                                           gAATGTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACa                                                         <  1:1786162/140‑1 (MQ=17)

                                                              tttACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGa                                                      <  1:1014306/140‑1 (MQ=17)

                                                              tttACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGa                                                      >  2:914266/1‑140 (MQ=17)

                                                              tttACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGa                                                      >  1:829165/1‑140 (MQ=17)

                                                               ttACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGaa                                                     <  1:1769511/140‑1 (MQ=17)

                                                               ttACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGaa                                                     <  2:1855508/140‑1 (MQ=17)

                                                               ttACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGaa                                                     <  2:829855/140‑1 (MQ=17)

                                                                tACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAAc                                                    >  2:564323/1‑140 (MQ=17)

                                                                tACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAAc                                                    <  1:1060494/140‑1 (MQ=17)

                                                                 aCTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACt                                                   >  1:1355138/1‑140 (MQ=17)

                                                                     tCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGAt                                               <  1:123125/140‑1 (MQ=17)

                                                                     tCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGAt                                               <  1:1244175/140‑1 (MQ=17)

                                                                      cAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATc                                              >  2:1128329/1‑140 (MQ=17)

                                                                      cAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATc                                              >  2:381318/1‑140 (MQ=17)

                                                                      cAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATc                                              >  2:2039428/1‑140 (MQ=17)

                                                                       aGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCt                                             <  2:622064/140‑1 (MQ=17)

                                                                             ggCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTtgc                                       >  1:1943263/1‑140 (MQ=17)

                                                                               cGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTtgctg                                     <  2:1489082/140‑1 (MQ=17)

                                                                                 ttAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTgctgct                                   <  1:564323/140‑1 (MQ=17)

                                                                                  tAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTc                                  <  2:1165443/140‑1 (MQ=17)

                                                                                  tAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTc                                  <  2:829165/140‑1 (MQ=17)

                                                                                    aaGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAg                                <  1:902814/140‑1 (MQ=17)

                                                                                    aaGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAg                                <  2:1569996/140‑1 (MQ=17)

                                                                                         tACTTCTGCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTaaa                           >  1:1775815/1‑140 (MQ=18)

                                                                                                gCGATCCTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGa                    >  2:1187428/1‑140 (MQ=18)

                                                                                                     ccTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCgag               <  2:239958/140‑1 (MQ=17)

                                                                                                     ccTCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCgag               <  1:1461562/140‑1 (MQ=17)

                                                                                                       tCAGGGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGaa             <  2:494825/140‑1 (MQ=17)

                                                                                                       tCAGAGTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGTCCGAGaa             <  2:391607/140‑1 (MQ=17)

                                                                                                          gagTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGa          <  1:1031029/140‑1 (MQ=17)

                                                                                                           agTCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGac         >  2:1257498/1‑140 (MQ=17)

                                                                                                             tCCTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGacac       >  1:660654/1‑140 (MQ=17)

                                                                                                               cTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGa          <  1:745020/135‑1 (MQ=17)

                                                                                                               cTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGa          >  2:745020/1‑135 (MQ=18)

                                                                                                               cTTGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTg     <  1:2039428/140‑1 (MQ=17)

                                                                                                                ttGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGa    >  1:1392615/1‑140 (MQ=18)

                                                                                                                ttGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGa    >  2:1117740/1‑140 (MQ=18)

                                                                                                                ttGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGa    >  2:1782166/1‑140 (MQ=18)

                                                                                                                ttGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGa    >  1:229482/1‑140 (MQ=17)

                                                                                                                ttGGCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGa    >  1:331525/1‑140 (MQ=17)

                                                                                                                ttGGCAGCGTGGAACAAATGAGAATACAAACGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGa    >  2:416172/1‑140 (MQ=17)

                                                                                                                tgggCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGa    >  2:1558407/3‑140 (MQ=17)

                                                                                                                  ggCAGCGTGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAg  >  1:1094729/1‑140 (MQ=18)

CGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAG  >  NC_000913/271450‑271703

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A