Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F48 I1 R1	62	93.4	3176452	99.2%	3151040	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	273,037	G→T	R64I (AGA→ATA)	ykfC →	CP4‑6 prophage; PF00078 domain‑containing protein YkfC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	273,037	0	G	T	100.0%	363.6 / NA	101	R64I (AGA→ATA)	ykfC	CP4‑6 prophage; PF00078 domain‑containing protein YkfC
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (55/46); total (55/46)

Only 100 of 103 total aligned reads displayed.

GTCCCTACGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCAGACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTGCGGGA  >  NC_000913/272900‑273169

gTCCCTACGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATAc                                                                                                                                    >  1:1500202/1‑140 (MQ=255)

 tCCCTACGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACt                                                                                                                                   <  1:569600/140‑1 (MQ=255)

 tCCCTACGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACt                                                                                                                                   <  2:34872/140‑1 (MQ=255)

 tCCCTACGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACt                                                                                                                                   >  2:189195/1‑140 (MQ=255)

   ccTACGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTgg                                                                                                                                 >  1:18196/1‑140 (MQ=255)

    cTACGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGc                                                                                                                                >  1:184547/1‑140 (MQ=255)

      aCGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTg                                                                                                                              <  2:1246566/140‑1 (MQ=255)

      aCGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTg                                                                                                                              >  2:1511686/1‑140 (MQ=255)

       cGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGt                                                                                                                             <  2:1058719/140‑1 (MQ=255)

       cGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGt                                                                                                                             >  1:420005/1‑140 (MQ=255)

       cGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGt                                                                                                                             >  2:1077481/1‑140 (MQ=255)

         gATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTg                                                                                                                           <  1:846433/140‑1 (MQ=255)

           ttCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGtt                                                                                                                            >  2:697788/1‑137 (MQ=255)

           ttCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGtt                                                                                                                            <  1:697788/137‑1 (MQ=255)

                 ggCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCaa                                                                                                                   <  2:1014262/140‑1 (MQ=255)

                 ggCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGAGGGAACAAAACAATGCTACAGGCCATACTGGCCGTTGAGCTGCaa                                                                                                                   <  2:1556716/140‑1 (MQ=255)

                      ctgcGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCt                                                                                                              >  1:262334/1‑140 (MQ=255)

                      ctgcGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCt                                                                                                              >  2:1069234/1‑140 (MQ=255)

                      ctgcGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCCGCAAATCCt                                                                                                              >  1:1487053/1‑140 (MQ=255)

                          gTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAgg                                                                                                          <  1:171704/140‑1 (MQ=255)

                           tCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAggg                                                                                                         <  2:18196/140‑1 (MQ=255)

                           tCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAggg                                                                                                         <  2:339672/140‑1 (MQ=255)

                           tCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAggg                                                                                                         <  2:690037/140‑1 (MQ=255)

                           tCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAggg                                                                                                         <  1:1252684/140‑1 (MQ=255)

                           tCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAggg                                                                                                         <  1:1258129/140‑1 (MQ=255)

                                   cacaACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTa                                                                                                 >  2:327113/1‑140 (MQ=255)

                                    acaACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTAc                                                                                                >  1:52895/1‑140 (MQ=255)

                                     caACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTAct                                                                                               >  2:1100303/1‑140 (MQ=255)

                                     caACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTAct                                                                                               >  2:692535/1‑140 (MQ=255)

                                      aaCCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGTCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTActc                                                                                              >  1:692283/1‑140 (MQ=255)

                                      aaCCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTActc                                                                                              >  2:342822/1‑140 (MQ=255)

                                      aaCCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTActc                                                                                              >  2:1510875/1‑140 (MQ=255)

                                      aaCCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTActc                                                                                              >  1:1546446/1‑140 (MQ=255)

                                       aCCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTActct                                                                                             <  2:467210/140‑1 (MQ=255)

                                       aCCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCCGCAAAACCTCAGGGATGAATTActct                                                                                             <  2:1487053/140‑1 (MQ=255)

                                        ccAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGTTGCAAATCCTCAGGGATGAATTActct                                                                                             >  2:1487104/1‑139 (MQ=255)

                                        ccAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTActct                                                                                             <  1:1487104/139‑1 (MQ=255)

                                        ccAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACtctc                                                                                            >  2:1091959/1‑140 (MQ=255)

                                        ccAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACtctc                                                                                            >  1:722691/1‑140 (MQ=255)

                                        ccAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACtctc                                                                                            <  1:1069234/140‑1 (MQ=255)

                                        ccAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACtctc                                                                                            >  1:646161/1‑140 (MQ=255)

                                        ccAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACtctc                                                                                            >  1:448637/1‑140 (MQ=255)

                                        ccAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACtctc                                                                                            <  1:1091959/140‑1 (MQ=255)

                                         cAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCa                                                                                           >  2:889418/1‑140 (MQ=255)

                                            aaTGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGc                                                                                        <  2:722691/140‑1 (MQ=255)

                                             aTGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGcc                                                                                       <  1:893040/140‑1 (MQ=255)

                                              tggctggcTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGccc                                                                                      >  2:1271321/1‑139 (MQ=255)

                                              tggctggcTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCa                                                                                      <  1:1510875/140‑1 (MQ=255)

                                                gctggctgAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACt                                                                                    >  2:453013/1‑140 (MQ=255)

                                                gctggctgAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACt                                                                                    >  2:266626/1‑140 (MQ=255)

                                                gctggctgAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACt                                                                                    >  2:1042387/1‑140 (MQ=255)

                                                  tggctgAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTAc                                                                                  >  2:320879/1‑140 (MQ=255)

                                                  tggctgAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTAc                                                                                  >  2:336766/1‑140 (MQ=255)

                                                  tggctgAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTAc                                                                                  >  2:405182/1‑140 (MQ=255)

                                                  tggctgAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTAc                                                                                  >  1:176940/1‑140 (MQ=255)

                                                                  gATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCa                                                                  <  1:327113/140‑1 (MQ=255)

                                                                    tCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGa                                                                <  2:1355182/140‑1 (MQ=255)

                                                                    tCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGa                                                                <  1:889418/140‑1 (MQ=255)

                                                                       cGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACgg                                                             <  1:1100303/140‑1 (MQ=255)

                                                                       cGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACgg                                                             <  2:52895/140‑1 (MQ=255)

                                                                               tcaAAGGGGGCCCATACCCCCGGCGTTGATAGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACAt                                                     >  2:424347/1‑140 (MQ=255)

                                                                                caAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATc                                                    <  1:336766/140‑1 (MQ=255)

                                                                                        gCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAg                                            >  2:146658/1‑140 (MQ=255)

                                                                                        gCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAg                                            >  2:1042170/1‑140 (MQ=255)

                                                                                        gCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAg                                            >  1:1530763/1‑140 (MQ=255)

                                                                                            aTACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAAc                                        >  2:515499/1‑140 (MQ=255)

                                                                                                  ccGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCaaa                                  >  1:1407040/1‑140 (MQ=255)

                                                                                                  ccGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCaaa                                  >  1:940031/1‑140 (MQ=255)

                                                                                                   cGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAAc                                 >  2:247800/1‑140 (MQ=255)

                                                                                                    ggCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACt                                >  1:707877/1‑140 (MQ=255)

                                                                                                     gCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTg                               <  2:1546446/140‑1 (MQ=255)

                                                                                                     gCGTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTg                               <  1:1464979/140‑1 (MQ=255)

                                                                                                       gTTGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCg                             <  2:540766/140‑1 (MQ=255)

                                                                                                        ttGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGa                            >  1:976966/1‑140 (MQ=255)

                                                                                                         tGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGAc                           <  1:189195/140‑1 (MQ=255)

                                                                                                         tGATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGAc                           <  2:420005/140‑1 (MQ=255)

                                                                                                          gATGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGAcc                          >  2:1154046/1‑140 (MQ=255)

                                                                                                           aTGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCa                         <  1:515499/140‑1 (MQ=255)

                                                                                                           aTGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCa                         <  1:1070706/140‑1 (MQ=255)

                                                                                                           aTGGCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCa                         <  1:311283/140‑1 (MQ=255)

                                                                                                             ggCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACt                       >  1:1117216/1‑140 (MQ=255)

                                                                                                             ggCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACt                       <  2:1017603/140‑1 (MQ=255)

                                                                                                              gCGTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTg                      >  1:618559/1‑140 (MQ=255)

                                                                                                                gTGAACAAAACAATGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGACAAACTGCGACCACTggg                    <  1:289591/140‑1 (MQ=255)

                                                                                                                   aacaaaacaaTGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTAt                 >  2:300195/1‑140 (MQ=255)

                                                                                                                   aacaaaacaaTGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTAt                 >  1:1018424/1‑140 (MQ=255)

                                                                                                                    acaaaacaaTGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATc                >  2:658415/1‑140 (MQ=255)

                                                                                                                      aaaacaaTGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATccc              <  2:448637/140‑1 (MQ=255)

                                                                                                                        aacaaTGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATccccc            >  2:1265715/1‑139 (MQ=255)

                                                                                                                        aacaaTGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCcg            <  1:320879/140‑1 (MQ=255)

                                                                                                                             tGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTg       >  1:1448811/1‑140 (MQ=255)

                                                                                                                             tGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTg       >  1:62276/1‑140 (MQ=255)

                                                                                                                             tGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTg       <  1:146658/140‑1 (MQ=255)

                                                                                                                             tGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTg       >  1:919771/1‑140 (MQ=255)

                                                                                                                             tGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTg       <  1:247800/140‑1 (MQ=255)

                                                                                                                             tGCTACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTg       >  1:579125/1‑140 (MQ=255)

                                                                                                                               atACAGGCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTGCg     <  2:212890/139‑1 (MQ=255)

                                                                                                                                  cAGCCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTGCGGGa  <  2:692283/140‑1 (MQ=255)

                                                                                                                                     gCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTg       >  1:892117/1‑132 (MQ=255)

                                                                                                                                     gCCATACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTg       <  2:892117/132‑1 (MQ=255)

GTCCCTACGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCAGACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTGCGGGA  >  NC_000913/272900‑273169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A