Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 284,596 G→T V466L (GTA→TTA)  yagF → CP4‑6 prophage; D‑xylonate dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913284,5960GT100.0% 296.3 / NA 86V466L (GTA→TTA) yagFCP4‑6 prophage; D‑xylonate dehydratase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (42/44);  total (42/44)

ACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGG  >  NC_000913/284459‑284728
                                                                                                                                         |                                                                                                                                    
aCGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTta                                                                                                                                    <  2:367483/140‑1 (MQ=255)
   tGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATac                                                                                                                                 >  1:802139/1‑140 (MQ=255)
     aTCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATacca                                                                                                                               <  2:295625/140‑1 (MQ=255)
           ccgccgGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCacac                                                                                                                         >  2:1222351/1‑140 (MQ=255)
           ccgccgGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCacac                                                                                                                         >  1:1811520/1‑140 (MQ=255)
           ccgccgGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCacac                                                                                                                         >  1:1652818/1‑140 (MQ=255)
            cgccgGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACAcc                                                                                                                        >  2:1715300/1‑140 (MQ=255)
               cgGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACAccggc                                                                                                                     >  2:114299/1‑140 (MQ=255)
               cgGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACAccggc                                                                                                                     >  1:38575/1‑140 (MQ=255)
                ggAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCCCCACAccggcc                                                                                                                    <  2:1496081/140‑1 (MQ=255)
                ggAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACAccggcc                                                                                                                    <  2:926209/140‑1 (MQ=255)
                ggAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACAccggcc                                                                                                                    <  2:1960378/140‑1 (MQ=255)
                     aGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCcgggtg                                                                                                               >  1:1551659/1‑140 (MQ=255)
                     aGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCcgggtg                                                                                                               <  1:18163/140‑1 (MQ=255)
                                 aacggCTGACCTCGACGGTCAGCTTCCCGACGGGCAACATCGCTCCGGAAGCTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGCGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGAGTTCGtc                                                                                                   >  2:388599/4‑140 (MQ=255)
                                 aaGGGCTGATCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGtc                                                                                                   >  2:2055977/1‑140 (MQ=255)
                                 aaGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGtc                                                                                                   >  2:390534/1‑140 (MQ=255)
                                 aaGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGtc                                                                                                   >  1:681659/1‑140 (MQ=255)
                                 aaGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGGGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGtc                                                                                                   >  1:1434159/1‑140 (MQ=255)
                                        gACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAg                                                                                            >  2:1532435/1‑140 (MQ=255)
                                          ccTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAgcg                                                                                          <  2:1811520/140‑1 (MQ=255)
                                             cGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCag                                                                                       <  2:1310907/140‑1 (MQ=255)
                                               aCGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCaggc                                                                                     >  2:1663939/1‑140 (MQ=255)
                                                   tCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCaggcgatc                                                                                 >  1:824907/1‑140 (MQ=255)
                                                         tCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCaggcgatcaaggcg                                                                           <  1:1735893/140‑1 (MQ=255)
                                                           ccGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCaggcgatcaaggcgat                                                                         <  2:746823/140‑1 (MQ=255)
                                                           ccGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCaggcgatcaaggcgat                                                                         <  1:1170968/140‑1 (MQ=255)
                                                             gACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCaggcgatcaaggcgatca                                                                       >  1:889007/1‑140 (MQ=255)
                                                             gACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCaggcgatcaaggcgatca                                                                       <  1:1668585/140‑1 (MQ=255)
                                                             gACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGCGCGGGTGTTTGTCTCGGAAGCGCaggcgatcaaggcgatca                                                                       >  2:1226557/1‑140 (MQ=255)
                                                               cGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGgcgatcaaggcgatcaag                                                                     <  1:944986/140‑1 (MQ=255)
                                                               cGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGgcgatcaaggcgatcaag                                                                     <  1:114299/140‑1 (MQ=255)
                                                               agggCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGgcgatcaaggcgatcaag                                                                     <  2:1652818/139‑1 (MQ=255)
                                                                gggCTACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGgcgatcaaggcgatcaag                                                                     >  1:535331/1‑139 (MQ=255)
                                                                gggCTACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGgcgatcaaggcgatcaag                                                                     <  2:535331/139‑1 (MQ=255)
                                                                    aaCATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGa                                                                <  2:984798/140‑1 (MQ=255)
                                                                    aaCATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGa                                                                <  1:71843/140‑1 (MQ=255)
                                                                    aaCATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGa                                                                <  1:388599/140‑1 (MQ=255)
                                                                      cATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAag                                                              <  1:321032/140‑1 (MQ=255)
                                                                         cGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAgaga                                                           <  1:98027/140‑1 (MQ=255)
                                                                           cTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGAtt                                                         >  1:1193882/1‑140 (MQ=255)
                                                                           cTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGAtt                                                         >  1:1487718/1‑140 (MQ=255)
                                                                            tCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATtg                                                        >  1:1165101/1‑140 (MQ=255)
                                                                            tCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATtg                                                        >  2:1969511/1‑140 (MQ=255)
                                                                                gAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCa                                                    >  1:684368/1‑140 (MQ=255)
                                                                                gAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCa                                                    >  1:1999156/1‑140 (MQ=255)
                                                                                gAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCa                                                    >  1:709676/1‑140 (MQ=255)
                                                                                   ggTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAggg                                                 <  1:1532435/140‑1 (MQ=255)
                                                                                   ggTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAggg                                                 <  2:42350/140‑1 (MQ=255)
                                                                                   ggTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAggg                                                 <  1:1226557/140‑1 (MQ=255)
                                                                                      tCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGa                                              <  2:307842/140‑1 (MQ=255)
                                                                                      tCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGa                                              <  2:1216294/140‑1 (MQ=255)
                                                                                      tCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGa                                              <  2:1487718/140‑1 (MQ=255)
                                                                                      tCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGa                                              >  2:2030664/1‑140 (MQ=255)
                                                                                         gTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGatat                                           <  1:1663939/140‑1 (MQ=255)
                                                                                         gTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGACGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGatat                                           <  2:793994/140‑1 (MQ=255)
                                                                                           gATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCTATATCa                                         <  2:1522248/140‑1 (MQ=255)
                                                                                           gATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCa                                         <  2:681659/140‑1 (MQ=255)
                                                                                           gATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCa                                         <  2:26165/140‑1 (MQ=255)
                                                                                             tCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCAtt                                       >  2:86099/1‑139 (MQ=255)
                                                                                                 ggCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCAtggtgg                                   >  1:245197/1‑140 (MQ=255)
                                                                                                    cgcGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCT‑GGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGAt                               >  2:1726817/3‑140 (MQ=255)
                                                                                                    cACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGa                                >  1:1812589/1‑140 (MQ=255)
                                                                                                     aCGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGAt                               <  2:2085454/140‑1 (MQ=255)
                                                                                                     aCGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGAt                               <  2:824907/140‑1 (MQ=255)
                                                                                                     aCGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGCCTCGGAAGCGCAGGCGATCCAGGCGATCAAGCGGGAAGAGACTGTGCAGGGCGATATCATGgtggtgct                               <  2:1434159/140‑3 (MQ=255)
                                                                                                      cGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATc                              >  2:1142563/1‑140 (MQ=255)
                                                                                                      cGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATc                              >  1:734950/1‑140 (MQ=255)
                                                                                                      cGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATc                              >  2:1035576/1‑140 (MQ=255)
                                                                                                       ggCGATCGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATcg                             <  2:245197/140‑1 (MQ=255)
                                                                                                             cGACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATcggcggcg                       >  2:1887665/1‑140 (MQ=255)
                                                                                                              gACCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCT‑GGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCggg                     <  1:1726817/140‑1 (MQ=255)
                                                                                                               aCCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCggg                     <  2:684368/140‑1 (MQ=255)
                                                                                                               aCCCGTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCggg                     <  2:38575/140‑1 (MQ=255)
                                                                                                                   gTCGGTGGTGGGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCTCAGGCGATCAATGCGATCAAGGTGGAAGAGATTGTGCAGGGCGATATCATGGTGGGGATCGGCGGCGAGTCGt                 >  2:1053288/1‑140 (MQ=255)
                                                                                                                          gtggGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcac          >  2:1668094/1‑140 (MQ=255)
                                                                                                                          gtggGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcac          <  2:1551659/140‑1 (MQ=255)
                                                                                                                          gtggGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcac          >  2:720273/1‑140 (MQ=255)
                                                                                                                          gtggGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcac          >  2:216069/1‑140 (MQ=255)
                                                                                                                          gtggGCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcac          >  2:2083941/1‑140 (MQ=255)
                                                                                                                              gCGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcaccggc      <  1:2030664/140‑1 (MQ=255)
                                                                                                                               ggAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcaccggca     <  1:670430/139‑1 (MQ=255)
                                                                                                                               cGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcaccggca     <  1:1887665/140‑1 (MQ=255)
                                                                                                                               cGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcaccggca     <  1:1222351/140‑1 (MQ=255)
                                                                                                                               cGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcaccggca     <  2:802139/140‑1 (MQ=255)
                                                                                                                               cGAAGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcaccggca     <  1:1969511/140‑1 (MQ=255)
                                                                                                                                  aGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATgg  >  2:1569013/1‑140 (MQ=255)
                                                                                                                                  aGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATgg  >  2:768350/1‑140 (MQ=255)
                                                                                                                                  aGATGGCTTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATgg  >  2:1200317/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                    
ACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGG  >  NC_000913/284459‑284728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A