Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	286,228	C→A	G278G (GGC→GGA)	yagG →	putative D‑xylonate transporter YagG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	286,228	0	C	A	99.1%	389.6 / ‑3.8	116	G278G (GGC→GGA)	yagG	putative D‑xylonate transporter YagG
Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (68/47); total (68/48)
Fisher's exact test for biased strand distribution p-value = 4.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01

Only 100 of 122 total aligned reads displayed.

GCGCGTTCAAGATGATGGCGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGCTCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTGCCCTC  >  NC_000913/286092‑286363

     ttCAAGATGATGGCGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGATTTGGGGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTg                                                                                                                                 >  2:1906493/1‑140 (MQ=255)

     ttCAAGATGATGGCGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTg                                                                                                                                 <  1:496888/140‑1 (MQ=255)

     ttCAAGATGATGGCGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTg                                                                                                                                 <  1:992070/140‑1 (MQ=255)

       cAAGATGATGGCGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGct                                                                                                                               >  1:1261698/1‑140 (MQ=255)

                ggCGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGcc                                                                                                                      >  1:329207/1‑140 (MQ=255)

                ggCGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGcc                                                                                                                      >  1:537444/1‑140 (MQ=255)

                ggCGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAG‑TTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCct                                                                                                                     >  2:1119790/1‑140 (MQ=255)

                  cGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCctc                                                                                                                    >  1:805029/1‑139 (MQ=255)

                  cGACCTGCTCCAACGTGGCGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGGTGGCGCACCAGATTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCctt                                                                                                                    >  2:871899/1‑139 (MQ=255)

                    aCCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCctgct                                                                                                                  >  2:796752/1‑140 (MQ=255)

                    aCCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCctgct                                                                                                                  >  2:768155/1‑140 (MQ=255)

                      cTGCTCCAACGTGTGGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGCTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCAAGCctgctgt                                                                                                                >  2:971258/1‑139 (MQ=255)

                       tGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTggg                                                                                                               <  2:501991/140‑1 (MQ=255)

                       tGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCCCTTTGCTCCTCACGCCTGCTggg                                                                                                               >  2:1147580/1‑140 (MQ=255)

                        gCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGc                                                                                                              >  1:1538440/1‑140 (MQ=255)

                        gCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGc                                                                                                              >  2:1324751/1‑140 (MQ=255)

                        gCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGc                                                                                                              >  2:646752/1‑140 (MQ=255)

                        gCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGc                                                                                                              >  1:40283/1‑140 (MQ=255)

                            cAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCt                                                                                                          <  1:948097/140‑1 (MQ=255)

                              aCGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTc                                                                                                        >  1:1410406/1‑140 (MQ=255)

                               cGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCg                                                                                                       >  1:83046/1‑140 (MQ=255)

                                   gtgCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACcg                                                                                                   >  2:1341/1‑140 (MQ=255)

                                   gtgCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACcg                                                                                                   >  1:522041/1‑140 (MQ=255)

                                   gtgCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACcg                                                                                                   >  2:1032977/1‑140 (MQ=255)

                                    agcgcGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACcgc                                                                                                  >  2:1477320/2‑140 (MQ=255)

                                        cgggggGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCa                                                                                              >  2:2092826/1‑140 (MQ=255)

                                        cggcggGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCa                                                                                              <  2:83046/140‑1 (MQ=255)

                                        cggcggGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCa                                                                                              <  2:329207/140‑1 (MQ=255)

                                        cggcggGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCa                                                                                              <  2:1410406/140‑1 (MQ=255)

                                           cggGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCg                                                                                           <  2:2125552/140‑1 (MQ=255)

                                           cggGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCg                                                                                           >  1:1338818/1‑140 (MQ=255)

                                           cggGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCg                                                                                           >  1:1594283/1‑140 (MQ=255)

                                             gggCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGcc                                                                                         <  1:1032977/140‑1 (MQ=255)

                                             gggCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGcc                                                                                         <  2:817792/140‑1 (MQ=255)

                                             gggCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGcc                                                                                         <  1:1270393/140‑1 (MQ=255)

                                             gggCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGcc                                                                                         <  2:537444/140‑1 (MQ=255)

                                             gggCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGcc                                                                                         <  2:1715100/140‑1 (MQ=255)

                                             gggCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGcc                                                                                         <  2:1261698/140‑1 (MQ=255)

                                             gggCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCACTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGcc                                                                                         <  1:380622/140‑1 (MQ=255)

                                              ggCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCt                                                                                        <  1:646752/140‑1 (MQ=255)

                                              ggCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCt                                                                                        >  1:1762926/1‑140 (MQ=255)

                                                   cGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAg                                                                                   <  1:796752/140‑1 (MQ=255)

                                                   cGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAg                                                                                   <  1:1324751/140‑1 (MQ=255)

                                                    gCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGt                                                                                  <  2:90055/140‑1 (MQ=255)

                                                          cTTCGTGAAATACGTGATGGAACACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGatca                                                                            >  1:2113218/1‑140 (MQ=255)

                                                              gTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCAtcgt                                                                        <  2:899010/140‑1 (MQ=255)

                                                                gAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCAtcgtct                                                                      >  2:1386136/1‑139 (MQ=255)

                                                                gAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCAtcgtcg                                                                      >  1:178732/1‑140 (MQ=255)

                                                                  aaTACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGcc                                                                    >  2:1549996/1‑140 (MQ=255)

                                                                  aaTACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGcc                                                                    >  1:2052149/1‑140 (MQ=255)

                                                                  aaTACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGcc                                                                    >  2:1624333/1‑140 (MQ=255)

                                                                  aaTACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGcc                                                                    >  1:1287637/1‑140 (MQ=255)

                                                                   aTACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCt                                                                   <  2:2113218/140‑1 (MQ=255)

                                                                     aCGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTAc                                                                 <  1:1661321/140‑1 (MQ=255)

                                                                      cGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCCCCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACt                                                                <  1:2092826/140‑1 (MQ=255)

                                                                      cGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACt                                                                <  2:1762926/140‑1 (MQ=255)

                                                                      agTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACt                                                                <  2:40283/139‑1 (MQ=255)

                                                                          aTGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCt                                                            <  1:1386136/140‑1 (MQ=255)

                                                                          aTGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGCGGATCATCGTCGCCTACTCGCt                                                            >  2:410277/1‑140 (MQ=255)

                                                                               tCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCa                                                       >  1:328705/1‑140 (MQ=255)

                                                                                cACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAg                                                      <  1:988668/140‑1 (MQ=255)

                                                                                 aCCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGc                                                     >  2:1776865/1‑140 (MQ=255)

                                                                                 aCCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGc                                                     <  2:903463/140‑1 (MQ=255)

                                                                                 aCCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGc                                                     >  2:59443/1‑140 (MQ=255)

                                                                                 aCCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGc                                                     >  1:1144240/1‑140 (MQ=255)

                                                                                  cccGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGcc                                                    >  2:103546/1‑140 (MQ=255)

                                                                                   ccGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCct                                                   >  1:491413/1‑140 (MQ=255)

                                                                                   ccGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCct                                                   >  2:278052/1‑140 (MQ=255)

                                                                                      gAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCctgct                                                >  1:1022712/1‑140 (MQ=255)

                                                                                       aGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCctgctt                                               >  2:566372/1‑139 (MQ=255)

                                                                                        gTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGa                                              >  1:463629/1‑140 (MQ=255)

                                                                                         ttGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGAt                                             >  2:1769497/1‑140 (MQ=255)

                                                                                          tGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCT‑GACCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGAttt                                           >  1:592094/1‑140 (MQ=255)

                                                                                             cGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTc                                         >  1:1573513/1‑140 (MQ=255)

                                                                                                 ccAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCa                                     >  1:1506560/1‑140 (MQ=255)

                                                                                                 ccAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCa                                     >  1:1582716/1‑140 (MQ=255)

                                                                                                   aGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGTTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCAcc                                   >  1:731912/1‑140 (MQ=255)

                                                                                                    gTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCAccc                                  <  2:491413/140‑1 (MQ=255)

                                                                                                    gTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCAccc                                  <  2:328705/140‑1 (MQ=255)

                                                                                                      ttttACTTTACGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCcg                                <  2:1594283/140‑1 (MQ=255)

                                                                                                               acGGCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGcac                       >  1:1974159/1‑140 (MQ=255)

                                                                                                                 ggCAGCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACAt                     >  1:1051742/1‑140 (MQ=255)

                                                                                                                     gCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATcgcg                 >  2:1937849/1‑140 (MQ=255)

                                                                                                                     gCCTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATcgcg                 >  1:320743/1‑140 (MQ=255)

                                                                                                                      ccTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCcggc                              <  1:1582908/126‑1 (MQ=255)

                                                                                                                      ccTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCcggc                              >  2:1582908/1‑126 (MQ=255)

                                                                                                                      ccTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGcaca                      <  2:490488/134‑1 (MQ=255)

                                                                                                                      ccTCGCCACCATGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGcaca                      >  1:490488/1‑134 (MQ=255)

                                                                                                                              ccaTGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCAttttt        <  2:1506560/140‑1 (MQ=255)

                                                                                                                               caTGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTg       >  1:1313533/1‑140 (MQ=255)

                                                                                                                               caTGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTg       <  1:1776865/140‑1 (MQ=255)

                                                                                                                               caTGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTg       <  1:59443/140‑1 (MQ=255)

                                                                                                                                aTGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTGc      <  1:1937849/140‑1 (MQ=255)

                                                                                                                                aTGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTGc      <  2:1338818/140‑1 (MQ=255)

                                                                                                                                 tGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTGcc     >  2:1109358/1‑140 (MQ=255)

                                                                                                                                 tGTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTGcc     >  1:949681/1‑140 (MQ=255)

                                                                                                                                  gTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTGccc    >  2:277005/1‑140 (MQ=255)

                                                                                                                                  gTTCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTAGTCAACCCGGCGGAGCACATCGCGCTCATTTTTGcct    >  2:1608013/1‑139 (MQ=255)

                                                                                                                                   ttCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTGCCCt   <  2:1051742/140‑1 (MQ=255)

                                                                                                                                    tCGGATCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACGCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTGCCCTc  >  1:2006618/1‑140 (MQ=255)

GCGCGTTCAAGATGATGGCGACCTGCTCCAACGTGGTGCGCGGCGGGGCGACGCTCTACTTCGTGAAATACGTGATGGATCACCCGGAGTTGGCGACCCAGTTTTTACTTTACGGCAGCCTCGCCACCATGTTCGGCTCGCTTTGCTCCTCACGCCTGCTGGGCCGCTTCGACCGCGTCACCGCCTTCAAGTGGATCATCGTCGCCTACTCGCTGATCAGCCTGCTGATTTTCGTCACCCCGGCGGAGCACATCGCGCTCATTTTTGCCCTC  >  NC_000913/286092‑286363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A