Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	293,471	C→A	E150* (GAG→TAG)	yagL ←	CP4‑6 prophage; resolvase‑like catalytic domain‑containing protein YagL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	293,471	0	C	A	100.0%	512.7 / NA	146	E150* (GAG→TAG)	yagL	CP4‑6 prophage; resolvase‑like catalytic domain‑containing protein YagL
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (56/90); total (56/90)

Only 100 of 152 total aligned reads displayed.

TCGGTATTTGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTCTATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTGCCGGTTCATT  >  NC_000913/293334‑293607

tCGGTATTTGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCtata                                                                                                                                        >  2:2047672/1‑140 (MQ=255)

tCGGTATTTGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCtata                                                                                                                                        >  2:1906285/1‑140 (MQ=255)

 cGGTATTTGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTatat                                                                                                                                       >  1:1712726/1‑140 (MQ=255)

   gTATTTGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATcc                                                                                                                                     >  2:589296/1‑140 (MQ=255)

     aTTTGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCtt                                                                                                                                   <  2:281865/140‑1 (MQ=255)

      tttGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTg                                                                                                                                  <  2:1527481/140‑1 (MQ=255)

      tttGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTg                                                                                                                                  >  1:305812/1‑140 (MQ=255)

      tttGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTg                                                                                                                                  <  2:192509/140‑1 (MQ=255)

       ttGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGa                                                                                                                                 >  1:531382/1‑140 (MQ=255)

         gCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAg                                                                                                                               >  1:1268234/1‑140 (MQ=255)

          cTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGc                                                                                                                              <  1:269598/140‑1 (MQ=255)

          cTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGc                                                                                                                              <  1:1197209/140‑1 (MQ=255)

          cTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGc                                                                                                                              <  2:1873072/140‑1 (MQ=255)

            tCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTg                                                                                                                            <  2:670646/140‑1 (MQ=255)

              cctcctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGc                                                                                                                              >  1:2090168/1‑136 (MQ=255)

              cctcctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGc                                                                                                                              <  2:2090168/136‑1 (MQ=255)

              cctcctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGa                                                                                                                          >  1:1636905/1‑140 (MQ=255)

              cctcctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGa                                                                                                                          >  2:346940/1‑140 (MQ=255)

              cctcctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGa                                                                                                                          >  1:121189/1‑140 (MQ=255)

                tcctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTg                                                                                                                                  >  1:687033/1‑130 (MQ=255)

                tcctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTg                                                                                                                                  <  2:687033/130‑1 (MQ=255)

                 cctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATgg                                                                                                                       <  1:774161/140‑1 (MQ=255)

                 cctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATgg                                                                                                                       <  2:2144269/140‑1 (MQ=255)

                 cctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATgg                                                                                                                       <  2:2101694/140‑1 (MQ=255)

                  ctTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGt                                                                                                                      <  1:307798/140‑1 (MQ=255)

                    ttCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAg                                                                                                                    >  2:583287/1‑140 (MQ=255)

                    ttCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAg                                                                                                                    <  1:334016/140‑1 (MQ=255)

                     tCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGc                                                                                                                   <  2:726421/140‑1 (MQ=255)

                      cGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCt                                                                                                                  <  2:749101/140‑1 (MQ=255)

                      cGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCt                                                                                                                  <  1:357535/140‑1 (MQ=255)

                      cGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCt                                                                                                                  <  1:421329/140‑1 (MQ=255)

                      cGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCt                                                                                                                  <  2:900305/140‑1 (MQ=255)

                      cGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCt                                                                                                                  <  1:589296/140‑1 (MQ=255)

                      cGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCt                                                                                                                  <  1:156530/140‑1 (MQ=255)

                      cGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAAACGCATCCTGACGAGCAATCAAAAAAGACAAGCAGCTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCt                                                                                                                  <  1:1968550/140‑1 (MQ=255)

                       gTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCCTGAAGCTGGATGGTAGCTg                                                                                                                 <  2:771772/140‑1 (MQ=255)

                        tCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGt                                                                                                                >  2:1379601/1‑140 (MQ=255)

                          cTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAg                                                                                                              >  2:1449200/1‑140 (MQ=255)

                          cTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAg                                                                                                              <  2:1662476/140‑1 (MQ=255)

                             aTTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATa                                                                                                           <  1:354113/140‑1 (MQ=255)

                                ttttCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAAc                                                                                                        <  2:1159545/140‑1 (MQ=255)

                                   tCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGCCGAGCAATCAAAAAAGACAAGCAACTTTCAGCCGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACAtt                                                                                                     >  2:1767754/1‑140 (MQ=255)

                                   tCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACAtt                                                                                                     >  1:626555/1‑140 (MQ=255)

                                       aaCATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCCTGAAGCTGGATGGTAGCTGTAGATAAACATTTCtt                                                                                                 >  2:1053305/1‑140 (MQ=255)

                                            gTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGa                                                                                            >  1:1452985/1‑140 (MQ=255)

                                                 tatCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCa                                                                                       >  1:2083024/1‑140 (MQ=255)

                                                 tatCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCa                                                                                       <  1:583287/140‑1 (MQ=255)

                                                    cGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCaaaa                                                                                    >  1:909444/1‑140 (MQ=255)

                                                       cTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCaaaaaaa                                                                                 >  2:825925/1‑140 (MQ=255)

                                                       cTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCaaaaaaa                                                                                 >  1:511286/1‑140 (MQ=255)

                                                           tAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAaaaataaa                                                                             >  2:1730750/1‑140 (MQ=255)

                                                            aGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAaaaataaaa                                                                            <  1:1044549/140‑1 (MQ=255)

                                                              ttGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAaaataaaata                                                                          <  2:506625/140‑1 (MQ=255)

                                                                    tCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGt                                                                    <  1:1469387/140‑1 (MQ=255)

                                                                    tCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGt                                                                    <  2:305812/140‑1 (MQ=255)

                                                                    tCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGt                                                                    <  2:218180/140‑1 (MQ=255)

                                                                    tCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGt                                                                    <  2:202344/140‑1 (MQ=255)

                                                                    tCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCCTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGt                                                                    <  1:1053305/140‑1 (MQ=255)

                                                                      aGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTaa                                                                  >  1:1657846/1‑140 (MQ=255)

                                                                           gtgAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGtcct                                                             >  2:965499/1‑140 (MQ=255)

                                                                              aaTGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCca                                                          <  2:120261/140‑1 (MQ=255)

                                                                              aaTGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCca                                                          <  1:1906285/140‑1 (MQ=255)

                                                                              aaTGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCca                                                          <  2:1026645/140‑1 (MQ=255)

                                                                                  tCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGt                                                      <  1:1028139/140‑1 (MQ=255)

                                                                                  tCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGt                                                      <  1:1676756/140‑1 (MQ=255)

                                                                                  tCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGt                                                      <  1:268942/140‑1 (MQ=255)

                                                                                     aTCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCt                                                   <  1:1449200/140‑1 (MQ=255)

                                                                                      tCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTg                                                  >  1:1200451/1‑140 (MQ=255)

                                                                                       cGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGc                                                 <  1:1347073/140‑1 (MQ=255)

                                                                                          aTCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCaa                                              <  2:1416097/140‑1 (MQ=255)

                                                                                          aTCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCaa                                              <  2:648880/140‑1 (MQ=255)

                                                                                           tCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAg                                             >  2:616371/1‑140 (MQ=255)

                                                                                           tCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAg                                             >  1:1369559/1‑140 (MQ=255)

                                                                                           tCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAg                                             >  1:33409/1‑140 (MQ=255)

                                                                                           tCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAg                                             <  2:511286/140‑1 (MQ=255)

                                                                                            ccTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGa                                            <  2:1452985/140‑1 (MQ=255)

                                                                                              tGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACa                                          >  2:2009670/1‑140 (MQ=255)

                                                                                                aCGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGc                                        >  1:1062831/1‑140 (MQ=255)

                                                                                                aCGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGc                                        >  1:2009628/1‑140 (MQ=255)

                                                                                                aCGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGc                                        >  1:1841649/1‑140 (MQ=255)

                                                                                                 agAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCt                                       <  2:125501/139‑1 (MQ=255)

                                                                                                   aGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTa                                     >  2:1919863/1‑140 (MQ=255)

                                                                                                    gCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAg                                    <  2:1200451/140‑1 (MQ=255)

                                                                                                      aaTCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGAt                                  <  2:1102569/140‑1 (MQ=255)

                                                                                                      aaTCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGAAAGTCCACCACAGTTCTGCCAAGACAGCTTAGAt                                  <  2:719204/140‑1 (MQ=255)

                                                                                                       aTCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATc                                 >  1:859113/1‑140 (MQ=255)

                                                                                                        tCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCt                                >  2:1003035/1‑140 (MQ=255)

                                                                                                          aaaaaaGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTgg                              <  1:1379601/140‑1 (MQ=255)

                                                                                                               aGACAAGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGa                         <  1:1242/140‑1 (MQ=255)

                                                                                                                    aGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGc                    >  2:1705609/1‑140 (MQ=255)

                                                                                                                    aGCAACTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGc                    >  2:365653/1‑140 (MQ=255)

                                                                                                                        aCTTTCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCgtgt                <  1:1971125/140‑1 (MQ=255)

                                                                                                                            tCAGCAGAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTGCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTg            <  1:1665772/140‑1 (MQ=255)

                                                                                                                             cagcagAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTGc           <  2:1495695/140‑1 (MQ=255)

                                                                                                                             cagcagAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTGc           <  1:404693/140‑1 (MQ=255)

                                                                                                                                 agAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTGCCGGt       <  1:1549831/140‑1 (MQ=255)

                                                                                                                                  gAAGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTGCCGGtt      <  2:1062831/140‑1 (MQ=255)

                                                                                                                                   aaGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTGCCGGttc     >  1:1515428/1‑140 (MQ=255)

                                                                                                                                   aaGGCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTGCCGGttc     <  2:1365386/140‑1 (MQ=255)

                                                                                                                                      gCTATATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTGCCGGttcatt  <  1:2009670/140‑1 (MQ=255)

TCGGTATTTGCTTCCCTCCTTTCGTCCTAATTTTTTCTTAACATGTCGATATCGGCTTTTAGTTGATTTCAGATTGTGAATGTCAATCGTATCCTGACGAGCAATCAAAAAAGACAAGCAACTTTCAGCAGAAGGCTCTATCCTTGAAGCTGGATGGTAGCTGTAGATAAACATTTCTTTTTGAAGGCAAAAAAATAAAATATTCTGTAAGTCCTCCACAGTTCTGCCAAGACAGCTTAGATCTGGAATGACAAGCGTGTCCTGCCGGTTCATT  >  NC_000913/293334‑293607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A