Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	305,693	C→A	L375L (CTG→CTT)	ecpD ←	fimbrial adhesin EcpD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	305,693	0	C	A	100.0%	358.2 / NA	103	L375L (CTG→CTT)	ecpD	fimbrial adhesin EcpD
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (69/34); total (69/34)

Only 100 of 103 total aligned reads displayed.

TTTTACCGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGTTG  >  NC_000913/305560‑305822

ttttACCGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCgtg                                                                                                                             >  2:406320/1‑140 (MQ=255)

      cGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACTGGGTTTGATAATAAGCGTGTTGGAg                                                                                                                       <  2:2099997/140‑1 (MQ=255)

        cTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGt                                                                                                                     >  2:1183679/1‑140 (MQ=255)

                     tataGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATAc                                                                                                        >  2:294663/1‑140 (MQ=255)

                      ataGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATAcc                                                                                                       >  1:191642/1‑140 (MQ=255)

                        aGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATAccag                                                                                                     >  1:1106824/1‑140 (MQ=255)

                        aGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATAc                                                                                                        <  1:1037531/137‑1 (MQ=255)

                        aGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATAc                                                                                                        >  2:1037531/1‑137 (MQ=255)

                          ccGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATAccagcc                                                                                                   >  1:165809/1‑140 (MQ=255)

                                tCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTc                                                                                             <  1:972276/140‑1 (MQ=255)

                                tCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTc                                                                                             <  1:406320/140‑1 (MQ=255)

                                tCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTc                                                                                             <  1:294663/140‑1 (MQ=255)

                                tCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTc                                                                                             <  2:165809/140‑1 (MQ=255)

                                     tGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTg                                                                                        <  1:1468928/140‑1 (MQ=255)

                                        cGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGAtg                                                                                     <  2:1274371/140‑1 (MQ=255)

                                        cGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGAtg                                                                                     <  2:1206934/140‑1 (MQ=255)

                                        cGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGAtg                                                                                     >  2:1592167/1‑140 (MQ=255)

                                          aCTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGTCAGACTCCGGTGAtgtg                                                                                   <  1:668319/140‑1 (MQ=255)

                                          aCTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGAtgtg                                                                                   >  2:1544627/1‑140 (MQ=255)

                                            tCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATgtggt                                                                                 <  1:1588055/140‑1 (MQ=255)

                                                         cATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGa                                                                    <  1:1544627/140‑1 (MQ=255)

                                                             tccctcccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGt                                                                >  2:732808/1‑140 (MQ=255)

                                                               cctcccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTg                                                              >  2:1143483/1‑140 (MQ=255)

                                                               cctcccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTg                                                              >  1:1854789/1‑140 (MQ=255)

                                                               cctcccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTg                                                              >  1:216602/1‑140 (MQ=255)

                                                                 tcccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGc                                                                      >  2:1960533/1‑130 (MQ=255)

                                                                 tcccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGc                                                                      <  1:1960533/130‑1 (MQ=255)

                                                                  cccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAAt                                                           >  2:907612/1‑140 (MQ=255)

                                                                  cccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAAt                                                           >  1:1296007/1‑140 (MQ=255)

                                                                   ccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATa                                                          <  1:2045558/140‑1 (MQ=255)

                                                                   ccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATa                                                          >  2:41800/1‑140 (MQ=255)

                                                                   ccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATa                                                          <  2:1124571/140‑1 (MQ=255)

                                                                   ccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATa                                                          >  1:995499/1‑140 (MQ=255)

                                                                   ccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATa                                                          >  2:181975/1‑140 (MQ=255)

                                                                   ccGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCA‑GGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAg                                                         >  1:414426/1‑140 (MQ=255)

                                                                    cgcgACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAg                                                         >  2:1403725/1‑140 (MQ=255)

                                                                      cgACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGAt                                                       >  2:1135723/1‑140 (MQ=255)

                                                                      cgACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGAt                                                       >  2:609514/1‑140 (MQ=255)

                                                                         cGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCtt                                                    <  1:41800/140‑1 (MQ=255)

                                                                                   gTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGat                                          <  2:716993/140‑1 (MQ=255)

                                                                                      tatTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATc                                       >  1:55175/1‑140 (MQ=255)

                                                                                      tatTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATc                                       >  1:974101/1‑140 (MQ=255)

                                                                                       atTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCg                                      <  1:1748432/140‑1 (MQ=255)

                                                                                        ttCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGc                                     >  1:1740447/1‑140 (MQ=255)

                                                                                         tCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCt                                    <  1:1143483/140‑1 (MQ=255)

                                                                                            tCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGAt                                 >  1:1270447/1‑140 (MQ=255)

                                                                                            tCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGAt                                 >  1:1482890/1‑140 (MQ=255)

                                                                                            tCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGAt                                 >  2:1318590/1‑140 (MQ=255)

                                                                                            tCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGAt                                 >  2:598958/1‑140 (MQ=255)

                                                                                            tCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGAt                                 >  1:1883518/1‑140 (MQ=255)

                                                                                            tCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAG‑‑CTTTGGTGTTGATATCGCTGATcc                               >  2:1927089/1‑140 (MQ=255)

                                                                                            tCGAAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGATAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGAt                                 >  1:907658/1‑140 (MQ=255)

                                                                                             cGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATc                                >  1:1769134/1‑140 (MQ=255)

                                                                                             cGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATc                                >  2:1606931/1‑140 (MQ=255)

                                                                                             cGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAG‑‑CTTTGGTGTTGATATCGCTGATccc                              <  1:1927089/140‑1 (MQ=255)

                                                                                              ggAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCt                                    >  2:1659458/1‑135 (MQ=255)

                                                                                              ggAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCt                                    <  1:1659458/135‑1 (MQ=255)

                                                                                              ggAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATcc                               >  2:226338/1‑140 (MQ=255)

                                                                                              ggAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATcc                               >  2:375744/1‑140 (MQ=255)

                                                                                              ggAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATcc                               >  1:1110261/1‑140 (MQ=255)

                                                                                              ggAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATcc                               >  1:2118836/1‑140 (MQ=255)

                                                                                              ggAGATAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATcc                               >  1:1554711/1‑140 (MQ=255)

                                                                                                agaTAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCg                             <  2:216602/140‑1 (MQ=255)

                                                                                                agaTAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCg                             <  1:61821/140‑1 (MQ=255)

                                                                                                agaTAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCg                             >  1:1281816/1‑140 (MQ=255)

                                                                                                agaTAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCg                             <  1:732808/140‑1 (MQ=255)

                                                                                                 gaTAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGa                            <  1:226338/140‑1 (MQ=255)

                                                                                                 gaTAATACTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGa                            <  2:442066/140‑1 (MQ=255)

                                                                                                  ataataCTGATGCTGAAATCATGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAg                           >  1:1155791/1‑140 (MQ=255)

                                                                                                  ataataCTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAg                           <  2:1296007/140‑1 (MQ=255)

                                                                                                  ataataCTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAg                           >  1:519255/1‑140 (MQ=255)

                                                                                                  ataataCTGATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAg                           >  1:1643385/1‑140 (MQ=255)

                                                                                                          gATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCa                   >  1:737572/1‑140 (MQ=255)

                                                                                                          gATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCa                   >  1:925647/1‑140 (MQ=255)

                                                                                                          gATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCa                   >  2:867123/1‑140 (MQ=255)

                                                                                                          gATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCa                   >  2:2074762/1‑140 (MQ=255)

                                                                                                          gATGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCa                   <  2:1373012/140‑1 (MQ=255)

                                                                                                           aTGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCAt                  >  2:2070574/1‑140 (MQ=255)

                                                                                                           aTGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCAt                  <  2:1281816/140‑1 (MQ=255)

                                                                                                           aTGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCAt                  >  2:80911/1‑140 (MQ=255)

                                                                                                           aTGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCAt                  >  1:1717889/1‑140 (MQ=255)

                                                                                                           aTGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGATAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCAt                  <  2:907658/140‑1 (MQ=255)

                                                                                                            tGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGGAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCAtt                 >  2:226721/1‑139 (MQ=255)

                                                                                                            tGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATc                 >  2:103695/1‑140 (MQ=255)

                                                                                                            tGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATc                 >  1:1014149/1‑140 (MQ=255)

                                                                                                            tGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATc                 >  1:57344/1‑140 (MQ=255)

                                                                                                            tGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATc                 >  1:830625/1‑140 (MQ=255)

                                                                                                            tGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATc                 >  1:1009564/1‑140 (MQ=255)

                                                                                                            tGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATc                 >  2:1297577/1‑140 (MQ=255)

                                                                                                            tGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATc                 >  2:2086228/1‑140 (MQ=255)

                                                                                                             gCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCt                >  2:1362427/1‑140 (MQ=255)

                                                                                                             gCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCt                >  2:1818272/1‑140 (MQ=255)

                                                                                                             gCTGAAATCACGGGGCTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATGTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCt                >  1:434842/1‑140 (MQ=255)

                                                                                                              cTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTg               >  1:281348/1‑140 (MQ=255)

                                                                                                                  aaTCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTa           <  2:1554711/140‑1 (MQ=255)

                                                                                                                  aaTCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTa           >  2:853111/1‑140 (MQ=255)

                                                                                                                   aTCACGGGGTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTaa          >  1:1745726/1‑140 (MQ=255)

                                                                                                                        ggggTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAaagaag     <  2:1950575/140‑1 (MQ=255)

                                                                                                                         gggTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGt    <  2:2053374/140‑1 (MQ=255)

                                                                                                                           gTTTGATAATAAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGTTg  <  2:1009564/140‑1 (MQ=255)

TTTTACCGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGTTG  >  NC_000913/305560‑305822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A