Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F48 I1 R1
|
508 |
125.6 |
4303852 |
99.2% |
4269421 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
308,482 |
G→T |
A284D (GCC→GAC) |
ecpC ← |
putative fimbrial usher protein EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 308,482 | 0 | G | T | 100.0%
| 315.5
/ NA
| 95 | A284D (GCC→GAC) | ecpC | putative fimbrial usher protein EcpC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (56/39); total (56/39) |
TCGTAAATCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGCAAGTTCCAGGTGTCGAGCATTCCACCGGCAAATCG > NC_000913/308347‑308618
|
tCGTAAATCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGa < 1:2085794/140‑1 (MQ=255)
tAAATCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTg > 1:1525113/1‑140 (MQ=255)
aaTCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGCG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGgc > 1:997334/1‑140 (MQ=255)
aaTCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGgc < 1:2117823/140‑1 (MQ=255)
tCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGgctg < 2:1525113/140‑1 (MQ=255)
cGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGctgctg > 2:1586429/1‑140 (MQ=255)
gTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGt > 1:684332/1‑140 (MQ=255)
gTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGt > 2:1039328/1‑140 (MQ=255)
tACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGtt > 2:190166/1‑139 (MQ=255)
tACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTc > 1:2122254/1‑140 (MQ=255)
tACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTc > 1:458413/1‑140 (MQ=255)
tACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTc > 1:951167/1‑140 (MQ=255)
tAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAgt > 1:857523/1‑139 (MQ=255)
tAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGa > 2:1008192/1‑140 (MQ=255)
aaGACCCCGGGTTTCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGTTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGa < 2:881492/139‑1 (MQ=255)
acgccGGGTAACCTCGTGATGATTGCCCATAGGGAAGTTCTGAACGCTTAGTAGCCGCCCAGCACGGGGGAG‑ATGGTCTGCGCCGGCCGCCGGTAAAAAGGCGATCGCTGGCGTGTTTGACTGGCTGCTGTCGAAGAtgg < 2:732892/137‑1 (MQ=255)
aCCCCGGGTATCAACTATATGATTGCCCATAGGGAATTTCTAAACGCTTAGTAGCCGCCCATCCCGGGGGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGAtgg < 2:997334/140‑1 (MQ=255)
cGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGa > 1:1354848/1‑140 (MQ=255)
gggTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAg > 1:1031443/1‑140 (MQ=255)
gggTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAg < 2:684332/140‑1 (MQ=255)
gggTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAg > 1:1996198/1‑140 (MQ=255)
gggTATCCACTCCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAg < 1:352769/140‑1 (MQ=255)
gTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCt > 2:353868/1‑140 (MQ=255)
tCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGc < 1:1047009/140‑1 (MQ=255)
tCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGc < 1:681041/140‑1 (MQ=255)
ttaaagATTCCCCAAAGGGAGTTTCGAAACGCTAAGTGGCCCCCCAGC‑CGGGTGGGAATGTACTTCCCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGt < 2:1605835/135‑1 (MQ=255)
ttCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGt < 2:951167/140‑1 (MQ=255)
ttCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGt < 1:1039328/140‑1 (MQ=255)
ttCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGt < 1:140759/140‑1 (MQ=255)
ttCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGt < 1:1586429/140‑1 (MQ=255)
ttCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGGGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGt < 2:1996198/140‑1 (MQ=255)
tCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGtt > 1:138616/1‑140 (MQ=255)
cATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGttt < 1:1008192/140‑1 (MQ=255)
cATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGttt > 2:924819/1‑140 (MQ=255)
ttGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCa > 1:1664847/1‑140 (MQ=255)
cccATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGa < 1:1904443/140‑1 (MQ=255)
cccATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGa > 1:1866341/1‑140 (MQ=255)
cccATAGTGAAATTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGa > 2:1691001/1‑140 (MQ=255)
ccATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGaa < 2:458413/140‑1 (MQ=255)
cATAGTCAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGaaa < 1:2019975/140‑1 (MQ=255)
aGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGc < 1:1899618/140‑1 (MQ=255)
aGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGc > 1:815847/1‑140 (MQ=255)
gTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTaaa > 2:170614/1‑140 (MQ=255)
cTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCCGGAAAGGCCGTAAATCt > 2:478494/1‑140 (MQ=255)
cTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCt > 1:425875/1‑140 (MQ=255)
tGACCGTTTAGTAGCCGCCCATCACGGGTGAG‑TTTTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCtt < 2:815847/140‑1 (MQ=255)
tGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTTACTGGCTGCTGTCGAAGAAGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCtt > 2:39937/1‑140 (MQ=255)
tGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCtt > 2:2038773/1‑140 (MQ=255)
aaCGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTcc > 2:714229/1‑140 (MQ=255)
aaCGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTcc > 1:96944/1‑140 (MQ=255)
ttAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCctgct > 2:579566/1‑140 (MQ=255)
ttAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCctgct > 1:132612/1‑140 (MQ=255)
agtagCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTccc > 1:1141805/1‑134 (MQ=255)
agtagCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTccc < 2:1141805/134‑1 (MQ=255)
agtagCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGa > 1:1309899/1‑140 (MQ=255)
ccgccCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATgg < 1:579566/140‑1 (MQ=255)
gccCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCg > 2:71504/1‑140 (MQ=255)
cccATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCgg > 1:125985/1‑140 (MQ=255)
cccATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCgg > 2:672838/1‑140 (MQ=255)
cccATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCgg > 1:1547198/1‑140 (MQ=255)
cccATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCgg > 1:384050/1‑140 (MQ=255)
cccATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCgg > 2:933093/1‑140 (MQ=255)
cccATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCgg > 2:475553/1‑140 (MQ=255)
cccATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGGGGAGCTGGCCTGGTTTCCCCCGGTAAAGCCGTAAATCTTCCCTGCTGAAATGGCgg > 2:1521863/1‑140 (MQ=255)
tCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAt < 1:672838/140‑1 (MQ=255)
tCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAt < 1:1697509/140‑1 (MQ=255)
tCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAt < 1:288019/140‑1 (MQ=255)
tCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAt < 1:885572/140‑1 (MQ=255)
tCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAt < 2:96944/140‑1 (MQ=255)
tCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAt < 1:353868/140‑1 (MQ=255)
tCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAt < 1:714229/140‑1 (MQ=255)
tCACGGGGGAG‑ATGTTCTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCTGTAAATATTCCCTGCTGAAATGGCGGTCAt < 1:478494/140‑1 (MQ=255)
accggggTGAG‑ATGTCCTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAt < 2:425875/136‑1 (MQ=255)
gggTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGc > 1:923241/1‑140 (MQ=255)
gTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGccc > 2:1688885/1‑140 (MQ=255)
g‑aTGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTaaa > 2:1205857/1‑139 (MQ=255)
tGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCCTCGGcccccaagg > 2:1074990/1‑134 (MQ=255)
tACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACt > 1:1553438/1‑140 (MQ=255)
aCTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTg < 2:2122254/140‑1 (MQ=255)
aCTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTg < 1:933093/140‑1 (MQ=255)
cTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGc > 2:210216/1‑140 (MQ=255)
cTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGc < 1:71504/140‑1 (MQ=255)
cTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGc > 1:1247744/1‑140 (MQ=255)
cTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGGCATCCGCCCTAAGGGCTgg > 2:1013224/1‑139 (MQ=255)
cTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGGCAACCGCCCTAAGGACTGc > 1:1961829/1‑140 (MQ=255)
cgcccgccGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCCTCGGCCCTAAGGACTTCaaa > 2:1918429/1‑139 (MQ=255)
cgcccgccGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGCAAg > 1:1788146/1‑140 (MQ=255)
cgcccgccGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGCAAg > 1:632901/1‑140 (MQ=255)
cgcccgccGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGCAAg > 1:552915/1‑140 (MQ=255)
cgcccgccGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCAACGGCCCCAAGGAATTCaaa > 2:1850041/1‑139 (MQ=255)
cccgccGCCGGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGCAAGtt > 2:227597/1‑140 (MQ=255)
ccgccgccgGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCTGTCATCGGCCCTAAGGACTGCAAGTTc < 2:1358494/140‑1 (MQ=255)
ccgGTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGCAAGTTCCAGgtg < 2:1866341/140‑1 (MQ=255)
ggTAAAAAGGCGATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGCAAGTTCCAGGTGTc < 2:384050/140‑1 (MQ=255)
gATCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCCGCCCCAAAGGCTGCAAGGTCCAGGGGTCGAGCATTCCAc > 1:1183325/1‑140 (MQ=255)
aTCACTGGCGTGTCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATTGGCCCTAAGGACTGCAAAGTCCCGGGGTCGAGCAtttcccc > 2:1840815/1‑135 (MQ=255)
gtgtCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCCAAGGAATGCAAGTTCCAGGTGTCGAGCATTCCCCCGGCAAATct > 2:273318/1‑139 (MQ=255)
|
TCGTAAATCCCGTACGGTAGACCCCGGGTATCCACTTCATGATTGCCCATAGTGAAGTTCTGAACGCTTAGTAGCCGCCCATCACGGGTGAG‑ATGTACTTCGCCCGCCGCCGGTAAAAAGGCGATCACTGGCGTGGCTGACTGGCTGCTGTCGAAGATGGTGGAGCTGGCCTGGTTTCCCCAGGAAAGGCCGTAAATCTTCCCTGCTGAAATGGCGGTCATCGGCCCTAAGGACTGCAAGTTCCAGGTGTCGAGCATTCCACCGGCAAATCG > NC_000913/308347‑308618
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
