Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	354,948	G→A	Q9Q (CAG→CAA)	codB →	cytosine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	354,948	0	G	A	100.0%	409.9 / NA	118	Q9Q (CAG→CAA)	codB	cytosine transporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (55/63); total (55/63)

Only 100 of 120 total aligned reads displayed.

TCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAGGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGATTTCTTCCTCG  >  NC_000913/354813‑355084

tcattcatATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGc                                                                                                                                      <  2:76233/140‑1 (MQ=255)

tcattcatATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGc                                                                                                                                      <  1:1186805/140‑1 (MQ=255)

tcattcatATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGc                                                                                                                                      >  1:641641/1‑140 (MQ=255)

tcattcatATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGc                                                                                                                                      >  2:1788456/1‑140 (MQ=255)

 cattcatATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGcc                                                                                                                                     >  2:426642/1‑140 (MQ=255)

  attcatATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGc                                                                                                                                      <  1:1821927/138‑1 (MQ=255)

  attcatATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGc                                                                                                                                      >  2:1821927/1‑138 (MQ=255)

  attcatATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCa                                                                                                                                    >  2:1181749/1‑140 (MQ=255)

            aaaaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACGACTTTAGCCAAGGGCCAGTCCCGCAGt                                                                                                                          >  1:188809/1‑140 (MQ=255)

            aaaaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGt                                                                                                                          >  1:1689198/1‑140 (MQ=255)

            aaaaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGt                                                                                                                          >  1:849495/1‑140 (MQ=255)

            aaaaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGt                                                                                                                          <  1:426642/140‑1 (MQ=255)

            aaaaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGt                                                                                                                          >  2:1272461/1‑140 (MQ=255)

            aaaaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGt                                                                                                                          >  2:1370721/1‑140 (MQ=255)

            aaaaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGt                                                                                                                          >  2:1677711/1‑140 (MQ=255)

            aaaaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGt                                                                                                                          >  2:1862394/1‑140 (MQ=255)

              aaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGTTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTct                                                                                                                        >  2:237101/1‑139 (MQ=255)

              aaTATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCg                                                                                                                        >  2:2128314/1‑140 (MQ=255)

                tatatTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGgc                                                                                                                      >  2:1290491/1‑140 (MQ=255)

                 atatTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGgcg                                                                                                                     <  2:1658495/140‑1 (MQ=255)

                 atatTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGgcg                                                                                                                     <  2:1127943/140‑1 (MQ=255)

                 atatTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGgcg                                                                                                                     <  1:580345/140‑1 (MQ=255)

                 atatTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGgcg                                                                                                                     <  1:225698/140‑1 (MQ=255)

                 atatTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGgcg                                                                                                                     <  1:1272461/140‑1 (MQ=255)

                  tatTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGgcgc                                                                                                                    >  2:1091588/1‑140 (MQ=255)

                  tatTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGgcgc                                                                                                                    <  1:1877810/140‑1 (MQ=255)

                     ttCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATTGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGa                                                                                                                 <  1:767904/140‑1 (MQ=255)

                      tCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGaa                                                                                                                <  1:1290491/140‑1 (MQ=255)

                        cccACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAg                                                                                                              <  2:549423/140‑1 (MQ=255)

                        cccACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAg                                                                                                              >  2:52020/1‑140 (MQ=255)

                         cctcGAAAACGATTGCTTTTTAACTTCAGATGAGTAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACGACTTTAGTCAAGGGGGAGTCCCGCAGTCGGCGCGGAAAgg                                                                                                             <  2:359580/137‑1 (MQ=255)

                         ccACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAgg                                                                                                             <  1:1313247/140‑1 (MQ=255)

                          cACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAggg                                                                                                            >  1:627627/1‑140 (MQ=255)

                                  cGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGc                                                                                                    >  2:1128904/1‑140 (MQ=255)

                                     ttGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCAtt                                                                                                 >  1:760334/1‑140 (MQ=255)

                                      tGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTg                                                                                                <  2:823039/140‑1 (MQ=255)

                                        cTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGAc                                                                                              <  1:237101/140‑1 (MQ=255)

                                                  tCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATg                                                                                    <  1:55277/140‑1 (MQ=255)

                                                  tCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATg                                                                                    <  1:42545/140‑1 (MQ=255)

                                                   cAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGc                                                                                   <  2:1480405/140‑1 (MQ=255)

                                                   cAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGc                                                                                   <  1:1128904/140‑1 (MQ=255)

                                                   cAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGc                                                                                   <  1:1720115/140‑1 (MQ=255)

                                                   cAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCACAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGc                                                                                   <  1:1862394/140‑1 (MQ=255)

                                                      aTGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTgg                                                                                >  2:1018504/1‑140 (MQ=255)

                                                         aaTAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGAt                                                                             >  2:767781/1‑140 (MQ=255)

                                                          aTAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGAtt                                                                            >  2:688561/1‑140 (MQ=255)

                                                              aaTGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAAcc                                                                        >  2:786268/1‑140 (MQ=255)

                                                                tGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACctt                                                                      >  2:1608342/1‑140 (MQ=255)

                                                                tGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACctt                                                                      >  2:1292253/1‑140 (MQ=255)

                                                                tGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACctt                                                                      >  1:1193766/1‑140 (MQ=255)

                                                                tGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACctt                                                                      >  2:1988917/1‑140 (MQ=255)

                                                                tGCGGCGGATTTTTTGGGGTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACctt                                                                      >  2:1442306/1‑140 (MQ=255)

                                                                tGCGGCGGATTTTTTGGGCTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACctt                                                                      >  2:1871323/1‑140 (MQ=255)

                                                                   ggcggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACcttctt                                                                   >  1:966298/1‑140 (MQ=255)

                                                                   ggcggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACcttctt                                                                   >  2:817769/1‑140 (MQ=255)

                                                                   ggcggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACcttctt                                                                   >  1:526475/1‑140 (MQ=255)

                                                                   ggcggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACcttctt                                                                   >  2:929297/1‑140 (MQ=255)

                                                                      ggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGAAAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTACCCTTCTTTTc                                                                <  2:1523190/140‑1 (MQ=255)

                                                                        aTTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCg                                                              <  2:1686875/140‑1 (MQ=255)

                                                                        aTTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCg                                                              <  1:2128314/140‑1 (MQ=255)

                                                                          tttttGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTATCCTTCTTTTCCGcc                                                            <  1:1442306/140‑1 (MQ=255)

                                                                          tttttGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGcc                                                            <  1:1592551/140‑1 (MQ=255)

                                                                                 gTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTAtgt                                                     >  1:924185/1‑140 (MQ=255)

                                                                                    tCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGa                                                  <  2:943582/140‑1 (MQ=255)

                                                                                           gCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCTAGTATGTGGACcggcgg                                           <  1:1361586/140‑1 (MQ=255)

                                                                                           gCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACcggcgg                                           <  2:1218774/140‑1 (MQ=255)

                                                                                           gCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACcggcgg                                           <  1:929297/140‑1 (MQ=255)

                                                                                            cAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCggcggc                                          <  1:1605618/140‑1 (MQ=255)

                                                                                            cAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCggcggc                                          >  2:785478/1‑140 (MQ=255)

                                                                                            aaaaaaGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCggcggc                                          <  2:849495/139‑1 (MQ=255)

                                                                                             aaaaaGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCa                                         <  2:924185/140‑1 (MQ=255)

                                                                                                    gggAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCgg                                  >  2:708800/1‑140 (MQ=255)

                                                                                                      gAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGaa                                <  1:333298/140‑1 (MQ=255)

                                                                                                      gAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGaa                                <  1:1073715/140‑1 (MQ=255)

                                                                                                      gAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGaa                                <  1:1554101/140‑1 (MQ=255)

                                                                                                      gAATTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGaa                                >  2:263794/1‑140 (MQ=255)

                                                                                                       aaTTTCGTGTCGCAAGATAACGACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  2:188809/140‑1 (MQ=255)

                                                                                                       aaTTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  2:641641/140‑1 (MQ=255)

                                                                                                       aaTTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  2:888492/140‑1 (MQ=255)

                                                                                                       aaTTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  1:1404772/140‑1 (MQ=255)

                                                                                                       aaTTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  1:786268/140‑1 (MQ=255)

                                                                                                       aaTTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  2:1495703/140‑1 (MQ=255)

                                                                                                       aaTTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  1:826085/140‑1 (MQ=255)

                                                                                                       aaTTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  1:52020/140‑1 (MQ=255)

                                                                                                       aaTTTCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  1:2103971/140‑1 (MQ=255)

                                                                                                         tttCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCg                             >  1:1675323/1‑140 (MQ=255)

                                                                                                           tCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               >  1:1180657/1‑136 (MQ=255)

                                                                                                           tCGTGTCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAAc                               <  2:1180657/136‑1 (MQ=255)

                                                                                                               gtCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTa                       <  2:526475/140‑1 (MQ=255)

                                                                                                                tCGCAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAg                      <  1:1677711/140‑1 (MQ=255)

                                                                                                                   cAAGATAACAACTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTa                   >  2:1438380/1‑140 (MQ=255)

                                                                                                                           caacTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGAtt           >  2:1441997/1‑140 (MQ=255)

                                                                                                                           caacTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGAtt           >  1:64722/1‑140 (MQ=255)

                                                                                                                           caacTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGAtt           >  1:1788178/1‑140 (MQ=255)

                                                                                                                              cTTTAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGATttct        >  2:1040105/1‑140 (MQ=255)

                                                                                                                                 tAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGATTTCTTcc     >  1:465111/1‑140 (MQ=255)

                                                                                                                                 tAGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGATTTCTTcc     >  2:1833847/1‑140 (MQ=255)

                                                                                                                                  aGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGATTTCTTCCt    >  1:1847112/1‑140 (MQ=255)

                                                                                                                                  aGCCAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGATTTCTTCCt    >  1:1529122/1‑140 (MQ=255)

                                                                                                                                    ccAAGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGATTTCTTCCTCg  <  2:760334/140‑1 (MQ=255)

TCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCGTGTCGCAAGATAACAACTTTAGCCAGGGGCCAGTCCCGCAGTCGGCGCGGAAAGGGGTATTGGCATTGACGTTCGTCATGCTGGGATTAACCTTCTTTTCCGCCAGTATGTGGACCGGCGGCACTCTCGGAACCGGTCTTAGCTATCATGATTTCTTCCTCG  >  NC_000913/354813‑355084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A