Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	380,146	C→A	G233C (GGT→TGT)	yaiO ←	outer membrane protein YaiO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	380,146	0	C	A	100.0%	494.5 / NA	143	G233C (GGT→TGT)	yaiO	outer membrane protein YaiO
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (43/100); total (43/100)

Only 100 of 147 total aligned reads displayed.

GGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGTTGC  >  NC_000913/380013‑380282

ggggggggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGt                                                                                                                                    <  1:2087881/140‑1 (MQ=255)

ggggggggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGt                                                                                                                                    >  2:290483/1‑140 (MQ=255)

  gggggtggCTATTCGGCAGGAAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACTCTTTACATGCCGTCa                                                                                                                                  <  2:582614/140‑1 (MQ=255)

    ggggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGc                                                                                                                                >  2:1382572/1‑140 (MQ=255)

     gggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGcc                                                                                                                               <  1:1006229/140‑1 (MQ=255)

     gggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGcc                                                                                                                               <  1:1947763/140‑1 (MQ=255)

     gggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGcc                                                                                                                               <  2:1732016/140‑1 (MQ=255)

     gggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGcc                                                                                                                               <  1:2090523/140‑1 (MQ=255)

     gggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGcc                                                                                                                               <  1:996966/140‑1 (MQ=255)

     gggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGcc                                                                                                                               <  2:787451/140‑1 (MQ=255)

     gggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCAACGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGcc                                                                                                                               <  1:716781/140‑1 (MQ=255)

     gggggCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAAACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGcc                                                                                                                               <  2:341190/140‑1 (MQ=255)

          cTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCgaga                                                                                                                          <  2:361213/140‑1 (MQ=255)

          cTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCgaga                                                                                                                          <  1:155596/140‑1 (MQ=255)

          cTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCgaga                                                                                                                          <  2:1977207/140‑1 (MQ=255)

              tCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTaa                                                                                                                      <  2:1404347/140‑1 (MQ=255)

              tCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTaa                                                                                                                      <  1:1842180/140‑1 (MQ=255)

                  cAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTg                                                                                                                  >  1:970092/1‑140 (MQ=255)

                     ggAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCtc                                                                                                               >  2:256074/1‑140 (MQ=255)

                       aaGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTG‑CGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCtcagt                                                                                                            <  1:1342076/140‑1 (MQ=255)

                           ccgccCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGCCCGTTAAAATCACCGGTTGGGGTTTCGTACCACGCTTTACATGCCGTCAGCAAGAGTTTAAGTTGCtaagtcag                                                                                                         <  2:1534397/140‑1 (MQ=255)

                           ccgccCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCtcagtcag                                                                                                         <  1:1990081/140‑1 (MQ=255)

                           ccgccCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCtcagtcag                                                                                                         <  2:910985/140‑1 (MQ=255)

                           ccgccCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCtcagtcag                                                                                                         <  1:2046638/140‑1 (MQ=255)

                           ccgccCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCtcagtcag                                                                                                         <  2:871207/140‑1 (MQ=255)

                           ccgccCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACAGCCTGCAAGTTGCAGACCCTTAAAATCATCAGATGGGGTGTCGTAGCACACTTTACATGCCGTCAGCCCAAGCTTATGTTGCccagtcag                                                                                                         <  2:2018853/140‑1 (MQ=255)

                             gccCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCg                                                                                                       <  1:1145089/140‑1 (MQ=255)

                             gccCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCg                                                                                                       <  2:111005/140‑1 (MQ=255)

                                    aTAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAAt                                                                                                <  1:1999408/140‑1 (MQ=255)

                                    aTAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAAt                                                                                                <  1:1699814/140‑1 (MQ=255)

                                     tAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATa                                                                                               <  2:1273368/140‑1 (MQ=255)

                                       gcgggcggCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACg                                                                                             <  2:895687/140‑1 (MQ=255)

                                        cgggcggCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGTAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCACCGGTTGAATACGt                                                                                            >  2:260915/1‑140 (MQ=255)

                                        cgggcggCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGt                                                                                            >  1:1944858/1‑140 (MQ=255)

                                        cgggcggCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGt                                                                                            >  2:35889/1‑140 (MQ=255)

                                            cggcAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCa                                                                                        <  1:1107153/140‑1 (MQ=255)

                                            cggcAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCATTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCa                                                                                        >  2:471085/1‑140 (MQ=255)

                                               cAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGAc                                                                                     <  2:1057048/140‑1 (MQ=255)

                                               cAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGAc                                                                                     <  1:1222219/140‑1 (MQ=255)

                                               cAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGAc                                                                                     <  1:358053/140‑1 (MQ=255)

                                                   aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGAc                                                                                 <  1:1023289/140‑1 (MQ=255)

                                                   aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCATTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGAc                                                                                 <  1:471085/140‑1 (MQ=255)

                                                    ggAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACg                                                                                <  2:481803/140‑1 (MQ=255)

                                                    ggAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACg                                                                                <  1:1562248/140‑1 (MQ=255)

                                                    ggAATCAGAATTTACAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACGCTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACg                                                                                <  2:2038129/140‑1 (MQ=255)

                                                        tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGTAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCACCGGTTGAATACGTTGCAGACTGACGctct                                                                            <  1:260915/140‑1 (MQ=255)

                                                        tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGctct                                                                            >  1:42488/1‑140 (MQ=255)

                                                             aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCAtg                                                                       <  2:18429/140‑1 (MQ=255)

                                                             aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCAtg                                                                       <  2:1371526/140‑1 (MQ=255)

                                                               ttCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCAtgct                                                                     <  2:1106910/140‑1 (MQ=255)

                                                                tCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACCTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCAtgctg                                                                    >  2:1837179/1‑140 (MQ=255)

                                                                          aCGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCgtg                                                          >  1:1468680/1‑140 (MQ=255)

                                                                          aCGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCgtg                                                          >  1:187380/1‑140 (MQ=255)

                                                                          aCGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCgtg                                                          >  2:1508324/1‑140 (MQ=255)

                                                                          aCGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGCGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCgtg                                                          >  1:1420002/1‑140 (MQ=255)

                                                                           cGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCgtgt                                                         <  2:187380/140‑1 (MQ=255)

                                                                               cTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCt                                                     >  2:1684881/1‑140 (MQ=255)

                                                                                tGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTg                                                    >  2:1054098/1‑140 (MQ=255)

                                                                                  cAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGc                                                  >  1:1986913/1‑140 (MQ=255)

                                                                                  cAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGc                                                  <  2:1468443/140‑1 (MQ=255)

                                                                                    aGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGt                                                <  1:1649765/140‑1 (MQ=255)

                                                                                    aGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGt                                                <  1:906400/140‑1 (MQ=255)

                                                                                    aGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGt                                                <  1:1684881/140‑1 (MQ=255)

                                                                                    aGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGt                                                <  2:1468680/140‑1 (MQ=255)

                                                                                    aGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGt                                                <  2:1346235/140‑1 (MQ=255)

                                                                                      ttGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTcc                                              <  1:345931/140‑1 (MQ=255)

                                                                                        gCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGTCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAg                                            >  2:1611150/1‑140 (MQ=255)

                                                                                        gCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAg                                            >  1:145621/1‑140 (MQ=255)

                                                                                         gaGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGt                                           <  2:1695951/139‑1 (MQ=255)

                                                                                           gACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCa                                         <  1:1382572/140‑1 (MQ=255)

                                                                                           aaCCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCa                                         <  2:1986913/139‑1 (MQ=255)

                                                                                              cGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAg                                      <  2:1078684/140‑1 (MQ=255)

                                                                                               gTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATa                                       <  1:908715/138‑1 (MQ=255)

                                                                                               gTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAgg                                     >  1:105399/1‑140 (MQ=255)

                                                                                                ttAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGgt                                    >  1:1310018/1‑140 (MQ=255)

                                                                                                ttAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGgt                                    <  2:1298062/140‑1 (MQ=255)

                                                                                                 tAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAg                                      <  1:2103816/137‑1 (MQ=255)

                                                                                                 tAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAg                                      >  2:2103816/1‑137 (MQ=255)

                                                                                                 tAAAATCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGgtg                                   >  2:367363/1‑140 (MQ=255)

                                                                                                   aaaTCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTa                                 <  1:1910553/140‑1 (MQ=255)

                                                                                                   aaaTCATCGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTa                                 <  1:1819697/140‑1 (MQ=255)

                                                                                                        atcGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATa                                       >  1:314881/1‑129 (MQ=255)

                                                                                                        atcGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATa                                       <  2:314881/129‑1 (MQ=255)

                                                                                                        atcGGTTGGGGTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCAc                            <  1:327416/140‑1 (MQ=255)

                                                                                                                gggTGTCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCcg                    <  2:698339/140‑1 (MQ=255)

                                                                                                                    gtCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGc                <  1:1537297/140‑1 (MQ=255)

                                                                                                                    gtCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGc                <  2:1586162/140‑1 (MQ=255)

                                                                                                                     tCGTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCt               >  2:425757/1‑140 (MQ=255)

                                                                                                                       gTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCAAGTCATAGGTGTAATCAACTGTTCCGCGGCTTa             >  2:18739/1‑140 (MQ=255)

                                                                                                                       gTACCACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTCGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTa             >  2:953618/1‑140 (MQ=255)

                                                                                                                          ccACACTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGcc          >  1:117026/1‑140 (MQ=255)

                                                                                                                           aacacTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCa         <  2:903428/139‑1 (MQ=255)

                                                                                                                               cTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGt     >  1:646025/1‑140 (MQ=255)

                                                                                                                               cTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGt     >  1:1852454/1‑140 (MQ=255)

                                                                                                                               cTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGt     <  2:714036/140‑1 (MQ=255)

                                                                                                                               cTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGt     <  1:1230730/140‑1 (MQ=255)

                                                                                                                               cTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGt     <  1:1065929/140‑1 (MQ=255)

                                                                                                                               cTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGt     <  1:256074/140‑1 (MQ=255)

                                                                                                                               cTTTACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGt     >  2:2094836/1‑140 (MQ=255)

                                                                                                                               atttACATGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGt     <  2:682360/139‑1 (MQ=255)

GGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCCCGAGATTAAGTTGCTCAGTCAGCGGTTGAATACGTTGCAGACTGACGCTCTTCATGCTGCCGTAGCGTGTTTCTGGCGTCCAGTCATAGGTGTAAGCACCTGTTCCGCGGCTTAGCCATAGTTGC  >  NC_000913/380013‑380282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A