Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	390,146	C→A	intergenic (‑419/‑105)	hemB ← / → yaiT	porphobilinogen synthase/putative autotransporter YaiT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	390,146	0	C	A	99.5%	724.7 / ‑4.0	211	intergenic (‑419/‑105)	hemB/yaiT	porphobilinogen synthase/putative autotransporter YaiT
Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (97/113); total (98/113)
Fisher's exact test for biased strand distribution p-value = 4.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01

Only 100 of 217 total aligned reads displayed.

TATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCAC  >  NC_000913/390009‑390284

 atttattATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAAtt                                                                                                                                         >  2:1416934/1‑140 (MQ=255)

       tatGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTg                                                                                                                                   <  2:800720/140‑1 (MQ=255)

          gCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTaa                                                                                                                                <  2:1947935/140‑1 (MQ=255)

          gCGGATGCTTCAAAAACAAAATTATCTGGAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAAGTCGTCTGTaa                                                                                                                                <  2:821548/140‑1 (MQ=255)

           cGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAAc                                                                                                                               >  2:1575643/1‑140 (MQ=255)

           cGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAAc                                                                                                                               >  1:1156785/1‑140 (MQ=255)

           cGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAAc                                                                                                                               >  2:1182277/1‑140 (MQ=255)

            gTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACg                                                                                                                              >  1:762979/1‑140 (MQ=255)

            gTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACg                                                                                                                              <  1:320218/140‑1 (MQ=255)

            gTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACg                                                                                                                              >  1:1987828/1‑140 (MQ=255)

            gTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACg                                                                                                                              <  1:1069495/140‑1 (MQ=255)

             tATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACgc                                                                                                                             >  2:2008362/1‑140 (MQ=255)

              aTGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACgca                                                                                                                            >  1:268653/1‑140 (MQ=255)

              aTGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACg                                                                                                                              <  2:470679/138‑1 (MQ=255)

              aTGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACg                                                                                                                              >  1:470679/1‑138 (MQ=255)

               tGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACgcag                                                                                                                           >  1:1440976/1‑140 (MQ=255)

                gCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACgcagc                                                                                                                          <  2:1504209/140‑1 (MQ=255)

                  ttCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCAt                                                                                                                        <  1:1832869/140‑1 (MQ=255)

                   tCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATa                                                                                                                       <  2:1908528/140‑1 (MQ=255)

                             aaTTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAgcg                                                                                                             <  2:1103244/140‑1 (MQ=255)

                             aaTTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAgcg                                                                                                             <  2:1156785/140‑1 (MQ=255)

                               ttATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGcgcg                                                                                                           <  2:1645414/140‑1 (MQ=255)

                                  tCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGaaa                                                                                                        <  1:1370994/140‑1 (MQ=255)

                                      cAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACata                                                                                                    <  2:1149454/140‑1 (MQ=255)

                                       aaCATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACataa                                                                                                   <  1:1245614/140‑1 (MQ=255)

                                          aTGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAatat                                                                                                <  1:925771/140‑1 (MQ=255)

                                            gTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGt                                                                                              <  1:1556560/140‑1 (MQ=255)

                                              tGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGttt                                                                                            >  1:22683/1‑140 (MQ=255)

                                                 aaTACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCt                                                                                         <  2:568211/140‑1 (MQ=255)

                                                  aTACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTa                                                                                        >  1:462591/1‑140 (MQ=255)

                                                    aCTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATg                                                                                      >  1:20512/1‑140 (MQ=255)

                                                      tgtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGTGCGAAACATAATATGTTTTCTATGCa                                                                                    <  1:1416934/140‑1 (MQ=255)

                                                      tgtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTAt                                                                                       <  1:339879/137‑1 (MQ=255)

                                                      tgtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCa                                                                                    <  1:1689077/140‑1 (MQ=255)

                                                      tgtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCa                                                                                    >  1:1525671/1‑140 (MQ=255)

                                                      tgtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCa                                                                                    <  1:1138353/140‑1 (MQ=255)

                                                       gtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCAt                                                                                   >  2:1354014/1‑140 (MQ=255)

                                                       gtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCAt                                                                                   >  1:1736450/1‑140 (MQ=255)

                                                       gtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCAt                                                                                   >  2:33057/1‑140 (MQ=255)

                                                       gtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCAt                                                                                   >  1:1026226/1‑140 (MQ=255)

                                                        tgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCAtt                                                                                  <  2:315987/140‑1 (MQ=255)

                                                           ttttATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGCAACGCGGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGAt                                                                               <  1:1060257/140‑1 (MQ=255)

                                                             ttATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATaa                                                                             >  1:1769257/1‑140 (MQ=255)

                                                               aTGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAAGTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAAtt                                                                           <  2:742883/140‑1 (MQ=255)

                                                                tGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTg                                                                          >  1:816499/1‑140 (MQ=255)

                                                                 gAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGa                                                                         <  1:561508/140‑1 (MQ=255)

                                                                 gAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGa                                                                         <  2:1219467/140‑1 (MQ=255)

                                                                  aaTTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGAt                                                                        <  2:22683/140‑1 (MQ=255)

                                                                  aaTTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGAt                                                                        <  2:1736450/140‑1 (MQ=255)

                                                                  aaTTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGAt                                                                        <  1:1665334/140‑1 (MQ=255)

                                                                    tttGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATgg                                                                      >  2:73817/1‑140 (MQ=255)

                                                                     ttGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGa                                                                     <  2:20512/140‑1 (MQ=255)

                                                                     ttGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGa                                                                     <  1:1198607/140‑1 (MQ=255)

                                                                      tGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGAt                                                                    <  1:616415/140‑1 (MQ=255)

                                                                      tGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGAt                                                                    <  1:1931093/140‑1 (MQ=255)

                                                                      tGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGAt                                                                    <  1:1971405/140‑1 (MQ=255)

                                                                       gATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATc                                                                   <  1:1408765/140‑1 (MQ=255)

                                                                        aTGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCa                                                                  >  1:1209245/1‑140 (MQ=255)

                                                                             tgtTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACtta                                                             >  1:237626/1‑140 (MQ=255)

                                                                                ttttCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACttatta                                                          <  1:723408/140‑1 (MQ=255)

                                                                                ttttCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACttatta                                                          <  1:73817/140‑1 (MQ=255)

                                                                                ttttCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACttatta                                                          <  2:463380/140‑1 (MQ=255)

                                                                                  ttCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACg                                                        <  2:1026226/140‑1 (MQ=255)

                                                                                            aTTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTgagga                                              <  2:1987886/140‑1 (MQ=255)

                                                                                            aTTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTgagga                                              <  2:1657705/140‑1 (MQ=255)

                                                                                            aTTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTgagga                                              <  1:1603834/140‑1 (MQ=255)

                                                                                               atatatGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAggg                                           >  2:851785/1‑140 (MQ=255)

                                                                                                 atatGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGAt                                         >  1:2096246/1‑140 (MQ=255)

                                                                                                 atatGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGAt                                         >  2:1416532/1‑140 (MQ=255)

                                                                                                 atatGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGAt                                         <  2:842774/140‑1 (MQ=255)

                                                                                                 atatGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGAt                                         <  2:1975232/140‑1 (MQ=255)

                                                                                                    tGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGAc                                      <  2:602745/140‑1 (MQ=255)

                                                                                                     gTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACa                                     >  1:1284728/1‑140 (MQ=255)

                                                                                                     gTCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACa                                     >  2:487881/1‑140 (MQ=255)

                                                                                                      tCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACaa                                    >  2:539025/1‑140 (MQ=255)

                                                                                                      tCCACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACaa                                    >  2:699284/1‑140 (MQ=255)

                                                                                                       ccACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTgag                                                <  1:1507965/127‑1 (MQ=255)

                                                                                                       ccACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACaaa                                   >  2:661398/1‑140 (MQ=255)

                                                                                                       ccACATTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACaaa                                   >  1:1187321/1‑140 (MQ=255)

                                                                                                        cacaTTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAAt                                  >  1:665011/1‑140 (MQ=255)

                                                                                                        cacaTTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAAt                                  >  1:869185/1‑140 (MQ=255)

                                                                                                         acaTTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGGTGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATg                                 <  1:1887556/140‑1 (MQ=255)

                                                                                                          caTTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGc                                >  1:1114935/1‑140 (MQ=255)

                                                                                                          caTTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGc                                >  2:432093/1‑140 (MQ=255)

                                                                                                           aTTCGGACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCa                               <  2:274114/140‑1 (MQ=255)

                                                                                                               ggACTTAGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTcc                           >  2:322366/1‑140 (MQ=255)

                                                                                                                     aGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGaaa                     >  2:1433130/1‑140 (MQ=255)

                                                                                                                     aGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGaaa                     >  1:1653355/1‑140 (MQ=255)

                                                                                                                     aGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGaaa                     >  1:1983159/1‑140 (MQ=255)

                                                                                                                     aGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGaaa                     >  1:492336/1‑140 (MQ=255)

                                                                                                                     aGGGGAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGaaa                     <  1:661398/140‑1 (MQ=255)

                                                                                                                       gggAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGaaaaa                   <  2:1855966/140‑1 (MQ=255)

                                                                                                                       gggAAAGAATAATTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGaaaaa                   <  2:198416/140‑1 (MQ=255)

                                                                                                                               ataatTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTg           <  1:980576/140‑1 (MQ=255)

                                                                                                                                 aatTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTgta         <  2:1262299/140‑1 (MQ=255)

                                                                                                                                 aatTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTgta         >  1:858218/1‑140 (MQ=255)

                                                                                                                                 aatTGAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTgta         >  2:972322/1‑140 (MQ=255)

                                                                                                                                     gAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTAt     <  2:1525671/140‑1 (MQ=255)

                                                                                                                                     gAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTAt     <  2:394726/140‑1 (MQ=255)

                                                                                                                                     gAACAATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTAt     <  2:2096246/140‑1 (MQ=255)

TATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCAC  >  NC_000913/390009‑390284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A