Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F48 I1 R1
|
508 |
125.6 |
4303852 |
99.2% |
4269421 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
402,172 |
G→T |
L142L (CTG→CTT) |
phoA → |
alkaline phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 402,172 | 0 | G | T | 98.3%
| 400.2
/ ‑2.5
| 120 | L142L (CTG→CTT) | phoA | alkaline phosphatase |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base T (63/55); total (65/55) |
| Fisher's exact test for biased strand distribution p-value = 4.99e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 122 total aligned reads displayed.
TAGATGCCTTACCGCTTACCGGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCG > NC_000913/402036‑402307
|
taGATGCCTTACCGCTTACCGGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGc > 2:726675/1‑140 (MQ=255)
taGATGCCTTACCGCTTACCGGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGc > 2:2072958/1‑140 (MQ=255)
taGATGCCTTACCGCTTACCGGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGc > 2:1353341/1‑140 (MQ=255)
aTGCCTTACCGCTTACCGGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTc > 2:1169824/1‑140 (MQ=255)
ccTTACCGCTTACCGGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGat > 2:1788358/1‑140 (MQ=255)
cttaccgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGata > 1:53327/1‑140 (MQ=255)
cttaccgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGata > 1:595054/1‑140 (MQ=255)
cttaccgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGata > 1:1678023/1‑140 (MQ=255)
ttaccgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGatat > 2:456238/1‑140 (MQ=255)
ttaccgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGatat > 1:493418/1‑140 (MQ=255)
ttaccgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGatat > 1:781092/1‑140 (MQ=255)
ttaccgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGatat > 1:982321/1‑140 (MQ=255)
taccgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATAtt < 2:1595706/140‑1 (MQ=255)
taccgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATAtt > 1:1409477/1‑140 (MQ=255)
taccgcttaccgGGCAATACACTCACTATGCGCTGAAAAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATAtt < 2:50262/140‑1 (MQ=255)
accgcttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTc > 1:270318/1‑140 (MQ=255)
ttaccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGaa < 1:2072958/140‑1 (MQ=255)
accgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGaaaa > 1:28986/1‑140 (MQ=255)
accgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGaaaa > 1:269236/1‑140 (MQ=255)
ccgGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGaaaaa < 1:886082/140‑1 (MQ=255)
ggCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGAt < 2:595054/140‑1 (MQ=255)
cAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCa < 1:174972/140‑1 (MQ=255)
tACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCAccc > 1:1409925/1‑140 (MQ=255)
aaccatcactATGCGGTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCAccc < 2:50593/135‑1 (MQ=255)
cgctcattATGCCCTGAATAAAAAAACCGGCAACCCGGACTACGTCACCGCCTGGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCaa < 1:1818978/138‑1 (MQ=255)
aacacactATACGCTGAATAAAAAAACCGCCAAACCGGTCTACGTCACCGATGCGGCTGCAACAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCaa < 2:404002/136‑1 (MQ=255)
cactATGCGCTTAATAAAAAAACCGGCAAACCGGACTACGTCAGCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGAt > 2:1692898/1‑140 (MQ=255)
cactATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGTCTGCATCAGCAACCGCCTGGTCAACCGGAGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGAt > 1:438437/1‑140 (MQ=255)
cactATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGAt > 2:942298/1‑140 (MQ=255)
actATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGAtt > 2:341292/1‑140 (MQ=255)
actATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGAtt < 2:770660/140‑1 (MQ=255)
actATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGAtt > 1:1431575/1‑140 (MQ=255)
aTGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTg > 2:711558/1‑140 (MQ=255)
aTGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTg > 1:207947/1‑140 (MQ=255)
aTGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTg > 2:436545/1‑140 (MQ=255)
aTGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTg > 2:439222/1‑140 (MQ=255)
aTGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTg > 2:521812/1‑140 (MQ=255)
tGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTgg > 1:1315920/1‑140 (MQ=255)
cgcTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGaa < 2:1384384/140‑1 (MQ=255)
cgcTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGaa < 1:1692898/140‑1 (MQ=255)
cgcTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGaa > 1:690718/1‑140 (MQ=255)
cgcTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGaa > 1:1213916/1‑140 (MQ=255)
cgcTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGaa > 1:1138126/1‑140 (MQ=255)
gAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATgg > 2:577694/1‑140 (MQ=255)
gAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTACATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATgg > 1:1633237/1‑140 (MQ=255)
aTAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCa > 2:619755/1‑140 (MQ=255)
aTAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCa > 1:600981/1‑140 (MQ=255)
aaaaaaaaCCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCaa < 2:269236/139‑1 (MQ=255)
aaCCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCg < 1:2036214/140‑1 (MQ=255)
aaCCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCg < 1:726675/140‑1 (MQ=255)
aaCCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCg < 2:587172/140‑1 (MQ=255)
aaCCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCg < 2:1678023/140‑1 (MQ=255)
aCCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGc < 2:1108078/140‑1 (MQ=255)
ccGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCa > 2:51838/1‑140 (MQ=255)
ggCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAgg > 2:65839/1‑140 (MQ=255)
aCGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGt < 2:575945/140‑1 (MQ=255)
aCGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGt < 2:92593/140‑1 (MQ=255)
aCGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGt < 1:1788358/140‑1 (MQ=255)
aCGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGt < 2:1799363/140‑1 (MQ=255)
aCGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGAGCTGGGCGTCGATATTAACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGt < 2:1138126/140‑1 (MQ=255)
cGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTa < 2:781092/140‑1 (MQ=255)
cACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACg > 1:1689142/1‑140 (MQ=255)
aCTCGGCTGCATCAACAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCt > 2:1338363/1‑140 (MQ=255)
tCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTAc > 1:2032179/1‑140 (MQ=255)
tCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTAc > 2:378216/1‑140 (MQ=255)
cGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTAcc > 1:849029/1‑140 (MQ=255)
gCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGc > 1:810056/1‑140 (MQ=255)
cTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCa < 2:2128/140‑1 (MQ=255)
cTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCa < 2:2132116/140‑1 (MQ=255)
cTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCa < 1:456238/140‑1 (MQ=255)
cTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCa < 1:942298/140‑1 (MQ=255)
atGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCa < 2:1423637/139‑1 (MQ=255)
tGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCag < 1:65839/140‑1 (MQ=255)
tCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGtt > 1:1518842/1‑140 (MQ=255)
aaCCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAgg < 2:1633237/140‑1 (MQ=255)
cGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATg > 2:2106670/1‑140 (MQ=255)
gCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGc > 2:883678/1‑140 (MQ=255)
ccTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGcc > 2:2075766/1‑140 (MQ=255)
ccTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGcc > 1:607277/1‑140 (MQ=255)
tGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCAc < 2:2032179/140‑1 (MQ=255)
ccGGTGTCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCcgct > 1:1527755/1‑140 (MQ=255)
gtgtCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCcgctgcg < 1:341292/140‑1 (MQ=255)
gtCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCcgctgcgct < 2:965639/140‑1 (MQ=255)
tCAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCcgctgcgctg < 1:534524/140‑1 (MQ=255)
cAAAACCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCtgg < 2:1431575/140‑1 (MQ=255)
aaCCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCtggtgg < 1:1338363/140‑1 (MQ=255)
aaCCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCtggtgg < 2:438437/140‑1 (MQ=255)
aaCCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCtggtgg < 2:847306/140‑1 (MQ=255)
aaCCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCtggtgg < 2:810056/140‑1 (MQ=255)
aCCTATAACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGc < 1:439222/140‑1 (MQ=255)
tataACGGCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGcaca > 1:1164151/1‑140 (MQ=255)
ggCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGAc < 2:1689142/140‑1 (MQ=255)
ggCGCGCTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGAc < 1:2106670/140‑1 (MQ=255)
cgcgcTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCt > 1:655686/1‑140 (MQ=255)
cgcgcTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCt > 1:358903/1‑140 (MQ=255)
cgcgcTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCt > 2:823364/1‑140 (MQ=255)
cgcgcTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCt > 2:44180/1‑140 (MQ=255)
cgcgcTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGGCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCt > 1:2045498/1‑140 (MQ=255)
gcgcTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTc > 2:571206/1‑140 (MQ=255)
cgcTTGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTcg > 2:1947882/1‑140 (MQ=255)
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TAGATGCCTTACCGCTTACCGGGCAATACACTCACTATGCGCTGAATAAAAAAACCGGCAAACCGGACTACGTCACCGACTCGGCTGCATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCG > NC_000913/402036‑402307
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
