Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 415,950 C→A V335L (GTA→TTA)  sbcD ← ATP dependent, structure specific DNA nuclease ‑ SbcD subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913415,9500CA100.0% 465.4 / NA 133V335L (GTA→TTA) sbcDATP dependent, structure specific DNA nuclease ‑ SbcD subunit
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (58/75);  total (58/75)

Only 100 of 134 total aligned reads displayed.

CTGCGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATACTTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTCCAGCT  >  NC_000913/415816‑416078
                                                                                                                                      |                                                                                                                                
ctgcGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGa                                                                                                                             <  2:1901709/140‑1 (MQ=255)
ctgcGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGa                                                                                                                             <  2:278485/140‑1 (MQ=255)
ctgcGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGa                                                                                                                             <  2:923230/140‑1 (MQ=255)
ctgcGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGa                                                                                                                             <  1:1248533/140‑1 (MQ=255)
   cGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAg                                                                                                                          >  2:1218399/1‑140 (MQ=255)
   cGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAg                                                                                                                          >  2:255199/1‑140 (MQ=255)
   cGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAg                                                                                                                          >  1:1516907/1‑140 (MQ=255)
   cGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAg                                                                                                                          >  1:1411468/1‑140 (MQ=255)
   cGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAg                                                                                                                          >  2:836694/1‑140 (MQ=255)
    gATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAgg                                                                                                                         <  1:1800847/140‑1 (MQ=255)
     aTTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGc                                                                                                                        >  2:1268011/1‑140 (MQ=255)
     aTTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGc                                                                                                                        >  1:83620/1‑140 (MQ=255)
     aTTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGc                                                                                                                        <  2:1250673/140‑1 (MQ=255)
      ttCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCa                                                                                                                       <  1:2022798/140‑1 (MQ=255)
          accAGTTCTTCCAGTGCCAGACGGCGATTGTACACCTCTTGGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTTCCAGCAATAAATCGACAGGCAATGa                                                                                                                   <  2:368970/139‑1 (MQ=255)
            cAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGAtt                                                                                                                 <  1:414261/140‑1 (MQ=255)
             aGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTc                                                                                                                >  1:1159468/1‑140 (MQ=255)
               ttcttcCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCgg                                                                                                              >  2:1833740/1‑140 (MQ=255)
               ttcttcCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCgg                                                                                                              >  2:594836/1‑140 (MQ=255)
                tcttcCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGt                                                                                                             >  2:338064/1‑140 (MQ=255)
                 tttcCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGtt                                                                                                            <  1:679200/139‑1 (MQ=255)
                 cttcCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGtt                                                                                                            <  2:1411468/140‑1 (MQ=255)
                    ccAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAAt                                                                                                         >  1:1861809/1‑140 (MQ=255)
                    ccAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAAt                                                                                                         >  1:1639326/1‑140 (MQ=255)
                       gTGCCAGACGGCGATTGAACACCTATTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGcc                                                                                                      >  1:1763518/1‑140 (MQ=255)
                         gCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTg                                                                                                    >  1:31960/1‑140 (MQ=255)
                           cAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGa                                                                                                  >  1:333028/1‑140 (MQ=255)
                            aGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGAt                                                                                                 >  1:2084864/1‑140 (MQ=255)
                             gACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGAtt                                                                                                >  1:994424/1‑140 (MQ=255)
                               cGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGAtttt                                                                                              <  2:333028/140‑1 (MQ=255)
                               cGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGAtttt                                                                                              <  2:424863/140‑1 (MQ=255)
                                 gCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTgc                                                                                            <  1:496387/140‑1 (MQ=255)
                                  cGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTCCCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTgcg                                                                                           <  2:1729838/140‑1 (MQ=255)
                                  cGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTgcg                                                                                           <  1:1256763/140‑1 (MQ=255)
                                   gATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTgcgc                                                                                          <  2:188519/140‑1 (MQ=255)
                                    aTTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCt                                                                                         <  1:1644547/140‑1 (MQ=255)
                                    aTTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCt                                                                                         <  1:594836/140‑1 (MQ=255)
                                    aTTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCt                                                                                         <  1:59245/140‑1 (MQ=255)
                                      tGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGa                                                                                       <  1:268390/140‑1 (MQ=255)
                                          cacCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAatat                                                                                   <  2:728952/140‑1 (MQ=255)
                                          cacCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAatat                                                                                   <  2:1384653/140‑1 (MQ=255)
                                          cacCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAatat                                                                                   <  1:1833740/140‑1 (MQ=255)
                                               ctTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGc                                                                              <  2:554600/140‑1 (MQ=255)
                                               ctTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGc                                                                              <  1:914856/140‑1 (MQ=255)
                                               ctTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGc                                                                              <  2:1992429/140‑1 (MQ=255)
                                                  cGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGa                                                                           <  2:1639326/140‑1 (MQ=255)
                                                  cGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGa                                                                           <  2:609761/140‑1 (MQ=255)
                                                  cGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGa                                                                           >  1:1713457/1‑140 (MQ=255)
                                                  cGACGCTGAGTTCGCTGACGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGa                                                                           >  2:1319318/1‑140 (MQ=255)
                                                    gcGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATa                                                                         <  1:252412/139‑1 (MQ=255)
                                                    aCGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATa                                                                         <  1:1936707/140‑1 (MQ=255)
                                                    aCGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATa                                                                         <  2:739717/140‑1 (MQ=255)
                                                      gCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACt                                                                       <  2:1159468/140‑1 (MQ=255)
                                                       cTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACtc                                                                      >  2:1871124/1‑140 (MQ=255)
                                                         gAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACtcat                                                                    <  2:31960/140‑1 (MQ=255)
                                                            ttCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCag                                                                 >  2:658753/1‑140 (MQ=255)
                                                             tCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCagt                                                                <  2:939753/140‑1 (MQ=255)
                                                              cGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCagta                                                               <  2:1169323/140‑1 (MQ=255)
                                                                    gggTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGAtt                                                         >  1:1059011/1‑140 (MQ=255)
                                                                      gTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTc                                                       <  1:367988/140‑1 (MQ=255)
                                                                          cACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGata                                                   <  1:1268011/140‑1 (MQ=255)
                                                                           aCGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGatat                                                  <  1:1112922/140‑1 (MQ=255)
                                                                               tGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATccag                                              >  1:597747/1‑140 (MQ=255)
                                                                                   ggctggctAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATccagccag                                          >  2:1310822/1‑140 (MQ=255)
                                                                                   ggctggctAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATccagccag                                          >  2:491010/1‑140 (MQ=255)
                                                                                   ggctggctAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATccagccag                                          >  1:664747/1‑140 (MQ=255)
                                                                                    gctggctAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGa                                         <  2:1861809/140‑1 (MQ=255)
                                                                                       ggctAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCACCCAGACAg                                      >  1:1656773/1‑140 (MQ=255)
                                                                                        gctAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAgg                                     <  1:491010/140‑1 (MQ=255)
                                                                                         ctAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGt                                    >  1:1322867/1‑140 (MQ=255)
                                                                                           aaCACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTgg                                  >  1:21636/1‑140 (MQ=255)
                                                                                            acacacGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGc                                 <  2:21636/140‑1 (MQ=255)
                                                                                              acacGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTc                               <  2:1122680/140‑1 (MQ=255)
                                                                                              acacGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTc                               <  1:926289/140‑1 (MQ=255)
                                                                                              acacGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTc                               <  2:1763518/140‑1 (MQ=255)
                                                                                                  gCTCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGc                           >  1:1024909/1‑140 (MQ=255)
                                                                                                    tCGCGCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGa                         >  2:531207/1‑140 (MQ=255)
                                                                                                     cgcgCTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGAt                        >  1:1312852/1‑140 (MQ=255)
                                                                                                       cgcTGTTCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATAc                      >  2:391831/1‑140 (MQ=255)
                                                                                                            ttCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATcgc                 >  2:991625/1‑140 (MQ=255)
                                                                                                            ttCACGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATcgc                 >  2:1996632/1‑140 (MQ=255)
                                                                                                               ccGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGcc              <  1:1218399/139‑1 (MQ=255)
                                                                                                               aCGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGcc              <  1:1206654/140‑1 (MQ=255)
                                                                                                               aCGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGcc              <  2:2084864/140‑1 (MQ=255)
                                                                                                               aCGACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGcc              <  1:531207/140‑1 (MQ=255)
                                                                                                                 gACTCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCAc            <  1:1996632/140‑1 (MQ=255)
                                                                                                                    tCCGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGt         >  2:909244/1‑140 (MQ=255)
                                                                                                                     ccGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCAAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGtt        <  1:1319318/140‑1 (MQ=255)
                                                                                                                      cGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTc       >  2:794825/1‑140 (MQ=255)
                                                                                                                      cGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTc       >  1:893615/1‑140 (MQ=255)
                                                                                                                      cGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTc       >  1:159651/1‑140 (MQ=255)
                                                                                                                      cGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTc       >  2:1908838/1‑140 (MQ=255)
                                                                                                                      cGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTc       >  2:1578242/1‑140 (MQ=255)
                                                                                                                      cGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTc       <  2:1713457/140‑1 (MQ=255)
                                                                                                                      cGACGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTc       >  2:1796310/1‑140 (MQ=255)
                                                                                                                        aCGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTCCa     >  1:1867385/1‑140 (MQ=255)
                                                                                                                         cGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATGCTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTCCAg    <  1:446575/140‑1 (MQ=255)
                                                                                                                         cGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTCCAg    <  2:1059011/140‑1 (MQ=255)
                                                                                                                         cGTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTCCAg    >  2:141286/1‑140 (MQ=255)
                                                                                                                         agTACCAGCAATAATTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTCCAg    <  2:1302828/139‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                
CTGCGATTCATCCAGTTCTTCCAGTGCCAGACGGCGATTGAACACCTCTTCGACGCTGAGTTCGCTGAGGGTTTCACGCTGTTGGCTGGCTAACACACGCTCGCGCTGTTCACGACTCCGACGTACCAGCAATACTTCGACAGGCAATGATTCGGTTAATGCCTGGATTTTGCGCTGAATATCATGCAGATACTCATCAGTAGTGATTTCGATATCCAGCCAGACAGGTGGCTCCTGCGATACATCGCGCCACTGTTCCAGCT  >  NC_000913/415816‑416078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A