Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	429,195	G→T	A517S (GCG→TCG)	secD →	Sec translocon accessory complex subunit SecD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	429,195	0	G	T	100.0%	593.0 / NA	171	A517S (GCG→TCG)	secD	Sec translocon accessory complex subunit SecD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (79/92); total (79/92)

Only 100 of 175 total aligned reads displayed.

CTATAAGAAGTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGGCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGCT  >  NC_000913/429059‑429328

 tataAGAAGTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGt                                                                                                                                   <  2:1826004/140‑1 (MQ=255)

 tataAGAAGTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGt                                                                                                                                   >  1:1419206/1‑140 (MQ=255)

   taAGAAGTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGTAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTgtcggtcg                                                                                                                                 >  2:1613565/1‑140 (MQ=255)

   taAGAAGTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTgtcggtcg                                                                                                                                 >  2:270555/1‑140 (MQ=255)

    aagaagTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGa                                                                                                                                <  1:802245/140‑1 (MQ=255)

    aagaagTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGa                                                                                                                                <  2:74119/140‑1 (MQ=255)

      gaagTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATg                                                                                                                              <  2:1456687/140‑1 (MQ=255)

         gTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGa                                                                                                                           <  1:368716/140‑1 (MQ=255)

         gTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGa                                                                                                                           <  1:665075/140‑1 (MQ=255)

          tttGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGaa                                                                                                                          >  1:1727197/1‑140 (MQ=255)

          tttGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGaa                                                                                                                          >  1:49802/1‑140 (MQ=255)

           ttGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAAc                                                                                                                         >  1:534901/1‑140 (MQ=255)

           ttGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAAc                                                                                                                         >  1:2010438/1‑140 (MQ=255)

              gTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTa                                                                                                                      <  1:489827/140‑1 (MQ=255)

              gTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTa                                                                                                                      <  1:2032970/140‑1 (MQ=255)

              gTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTa                                                                                                                      <  2:696385/140‑1 (MQ=255)

                 tGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTg                                                                                                                   <  1:1747785/140‑1 (MQ=255)

                   aTTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCAGTGTCGGTCGATGCGAACGTACTGAt                                                                                                                 >  1:1174950/1‑140 (MQ=255)

                    ttGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATc                                                                                                                >  1:1941814/1‑140 (MQ=255)

                         gccAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCaacga                                                                                                           <  1:1371794/139‑1 (MQ=255)

                         cccAGTGTTTTGATTGCCACCTTGTCTTTAACCGTCGG‑ATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCaacgaa                                                                                                          <  1:1490301/139‑1 (MQ=255)

                         aCCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGa                                                                                                                           <  1:239554/124‑1 (MQ=255)

                         aCCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGa                                                                                                                           >  2:239554/1‑124 (MQ=255)

                         aCCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCaacga                                                                                                           <  2:172782/140‑1 (MQ=255)

                          ccAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCaacgaa                                                                                                          <  1:932344/140‑1 (MQ=255)

                            aGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCaacgaacg                                                                                                        <  1:437162/140‑1 (MQ=255)

                            aGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCaacgaacg                                                                                                        <  2:31972/140‑1 (MQ=255)

                             gTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCaacgaacg                                                                                                        <  2:46108/139‑1 (MQ=255)

                              tGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTa                                                                                                      <  2:1669000/140‑1 (MQ=255)

                              tGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTa                                                                                                      >  2:210733/1‑140 (MQ=255)

                                     aTTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAaaga                                                                                               >  2:1421253/1‑140 (MQ=255)

                                      ttGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAaagaa                                                                                              <  1:1500079/140‑1 (MQ=255)

                                        gCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAagaaga                                                                                            >  1:1507166/1‑140 (MQ=255)

                                               tGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGc                                                                                     <  2:1941814/140‑1 (MQ=255)

                                               tGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGc                                                                                     <  2:1507166/140‑1 (MQ=255)

                                               tGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGc                                                                                     <  2:1610059/140‑1 (MQ=255)

                                               tGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGc                                                                                     >  1:1452039/1‑140 (MQ=255)

                                                 aTCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCaa                                                                                   <  2:534901/140‑1 (MQ=255)

                                                 aTCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCaa                                                                                   <  2:2010438/140‑1 (MQ=255)

                                                 aTCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCaa                                                                                   <  1:60844/140‑1 (MQ=255)

                                                 aTCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCaa                                                                                   <  1:156290/140‑1 (MQ=255)

                                                 aTCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCAGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCaa                                                                                   <  2:1174950/140‑1 (MQ=255)

                                                    ttAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACgg                                                                                <  1:187746/140‑1 (MQ=255)

                                                       aTCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACg                                                                             >  1:111182/1‑140 (MQ=255)

                                                       aTCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACg                                                                             <  2:1126181/140‑1 (MQ=255)

                                                       aTCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACg                                                                             <  1:993033/140‑1 (MQ=255)

                                                       aTCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACg                                                                             <  1:183452/140‑1 (MQ=255)

                                                       aTCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACg                                                                             <  1:46379/140‑1 (MQ=255)

                                                          gtcgGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTAc                                                                          <  2:1298739/140‑1 (MQ=255)

                                                           tcgGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACt                                                                         >  2:456521/1‑140 (MQ=255)

                                                             ggCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGt                                                                       >  2:904664/1‑140 (MQ=255)

                                                             ggCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGCATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGt                                                                       >  2:835729/1‑140 (MQ=255)

                                                                 ttATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCaa                                                                   <  2:1352323/140‑1 (MQ=255)

                                                                      tCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAG‑AACGGACGTACTGTTCAACAGGCa                                                             >  1:1645141/1‑140 (MQ=255)

                                                                             tGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTGCTGTTCAACAGGCAATtgat                                                       <  2:575960/140‑1 (MQ=255)

                                                                             tGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATtgat                                                       <  1:452184/140‑1 (MQ=255)

                                                                             tGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATtgat                                                       <  2:1018207/140‑1 (MQ=255)

                                                                             tGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATtgat                                                       <  2:111182/140‑1 (MQ=255)

                                                                              gCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATtgatg                                                      >  2:936550/1‑140 (MQ=255)

                                                                              gCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATtgatg                                                      >  1:584913/1‑140 (MQ=255)

                                                                               ccAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATtgatga                                                     <  2:726168/140‑1 (MQ=255)

                                                                                      cAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATtgatg                                                      <  2:978273/132‑1 (MQ=255)

                                                                                      cAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTAt                                              >  1:426058/1‑140 (MQ=255)

                                                                                      cAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTAt                                              >  1:79720/1‑140 (MQ=255)

                                                                                        aCGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATct                                            >  2:1013693/1‑139 (MQ=255)

                                                                                            tGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGgc                                        <  1:210733/140‑1 (MQ=255)

                                                                                            tGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGgc                                        >  1:915644/1‑140 (MQ=255)

                                                                                            tGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGgc                                        <  2:915644/140‑1 (MQ=255)

                                                                                               gTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCa                                     <  2:1602292/140‑1 (MQ=255)

                                                                                                tATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCAt                                    <  2:1496742/140‑1 (MQ=255)

                                                                                                 aTGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCAtt                                   <  2:79720/140‑1 (MQ=255)

                                                                                                 aTGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCAtt                                   <  2:49802/140‑1 (MQ=255)

                                                                                                 aTGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCAtt                                   >  2:547528/1‑140 (MQ=255)

                                                                                                   gCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCa                                 >  1:1134661/1‑140 (MQ=255)

                                                                                                        gTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCt                            >  1:581261/1‑140 (MQ=255)

                                                                                                        gTATCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCt                            >  1:739729/1‑140 (MQ=255)

                                                                                                          aTCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTAt                          >  1:965000/1‑140 (MQ=255)

                                                                                                          aTCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTAt                          >  1:1702754/1‑140 (MQ=255)

                                                                                                          aTCGCGGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTAt                          >  2:1133398/1‑140 (MQ=255)

                                                                                                            cgcgGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCt                        >  2:474327/1‑140 (MQ=255)

                                                                                                            cgcgGGTATCGTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCt                        >  1:1010828/1‑140 (MQ=255)

                                                                                                                      gTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGaa              <  1:1013693/140‑1 (MQ=255)

                                                                                                                      gTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGaa              >  2:1368124/1‑140 (MQ=255)

                                                                                                                      gTCTTAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGaa              <  1:1931575/140‑1 (MQ=255)

                                                                                                                         ttAACCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACAt           >  1:625726/1‑140 (MQ=255)

                                                                                                                           aaCCCTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATca         >  1:1960712/1‑140 (MQ=255)

                                                                                                                               cTTGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATcaccac     <  1:340363/140‑1 (MQ=255)

                                                                                                                                ttGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACg    >  1:1303749/1‑140 (MQ=255)

                                                                                                                                ttGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACg    <  2:1520949/140‑1 (MQ=255)

                                                                                                                                ttGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACg    <  2:421456/140‑1 (MQ=255)

                                                                                                                                 tGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGATCATCACCACGc   >  1:1061995/1‑140 (MQ=255)

                                                                                                                                 tGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACg    <  2:2010759/139‑1 (MQ=255)

                                                                                                                                 tGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGc   >  1:1947621/1‑140 (MQ=255)

                                                                                                                                 tGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGc   >  2:105832/1‑140 (MQ=255)

                                                                                                                                 tGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGc   >  1:188008/1‑140 (MQ=255)

                                                                                                                                 tGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGc   >  2:1891754/1‑140 (MQ=255)

                                                                                                                                 tGCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGc   >  1:1149551/1‑140 (MQ=255)

                                                                                                                                 ggCGGTGTCGGGCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGACGCATTCAGTTCTATCTTCGATGCGAACATCACCACGc   >  2:2026110/2‑140 (MQ=255)

                                                                                                                                  gCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACg    <  2:1913223/138‑1 (MQ=255)

                                                                                                                                  gCGGTGTCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGCt  >  1:847316/1‑140 (MQ=255)

CTATAAGAAGTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTCGGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGGCGGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGCT  >  NC_000913/429059‑429328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A