Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 429,482 G→T K612N (AAG→AAT)  secD → Sec translocon accessory complex subunit SecD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913429,4820GT100.0% 696.5 / NA 199K612N (AAG→AAT) secDSec translocon accessory complex subunit SecD
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (77/122);  total (77/122)

Only 100 of 205 total aligned reads displayed.

TGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATC  >  NC_000913/429346‑429618
                                                                                                                                         |                                                                                                                                        
tGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTg                                                                                                                                       <  2:1432571/140‑1 (MQ=255)
 gTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGt                                                                                                                                      >  2:1178594/1‑140 (MQ=255)
 gTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGt                                                                                                                                      >  1:1795054/1‑140 (MQ=255)
  tACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTc                                                                                                                                     <  1:904664/140‑1 (MQ=255)
  tACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTc                                                                                                                                     <  2:778790/140‑1 (MQ=255)
  tACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTc                                                                                                                                     >  1:273937/1‑140 (MQ=255)
       aGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCt                                                                                                                                >  2:116651/1‑140 (MQ=255)
        gTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTg                                                                                                                               >  1:892904/1‑140 (MQ=255)
         tGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTgg                                                                                                                              >  1:456020/1‑139 (MQ=255)
         tGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTga                                                                                                                              >  1:1578965/1‑140 (MQ=255)
         tGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTga                                                                                                                              >  1:1310953/1‑140 (MQ=255)
         tGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTga                                                                                                                              >  2:1337697/1‑140 (MQ=255)
         tGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTG‑‑GACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTgagg                                                                                                                            >  1:798331/1‑140 (MQ=255)
          tggTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTgag                                                                                                                             <  2:78556/139‑1 (MQ=255)
          gggTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTgag                                                                                                                             <  2:393908/140‑1 (MQ=255)
           ggTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTgagg                                                                                                                            >  2:2105226/1‑140 (MQ=255)
           ggTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTgagg                                                                                                                            >  2:332413/1‑140 (MQ=255)
            gTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTgagga                                                                                                                           >  1:601149/1‑140 (MQ=255)
              aCCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGt                                                                                                                         >  1:1977991/1‑140 (MQ=255)
                 ggggCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTgag                                                                                                                             <  2:1754948/133‑1 (MQ=255)
                  gggCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGa                                                                                                                     <  2:1288877/140‑1 (MQ=255)
                   ggCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGAt                                                                                                                    >  2:2115308/1‑140 (MQ=255)
                   ggCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGAt                                                                                                                    >  1:1899653/1‑140 (MQ=255)
                   ggCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGAt                                                                                                                    >  2:1663943/1‑140 (MQ=255)
                   ggCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGAt                                                                                                                    >  1:1594516/1‑140 (MQ=255)
                   ggCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGAt                                                                                                                    <  1:579291/140‑1 (MQ=255)
                     cAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGAtgt                                                                                                                  >  2:195996/1‑140 (MQ=255)
                     cAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGCCAA‑GAATCTGTCAATCTGAGGAGGGCGAtgt                                                                                                                  >  2:26828/1‑140 (MQ=255)
                       aTTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTgg                                                                                                                <  1:1368124/140‑1 (MQ=255)
                       aTTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTgg                                                                                                                <  1:1558056/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  2:1642450/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  2:1134661/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  2:1378129/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  2:1457149/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  1:1027298/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  2:2033573/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  2:926252/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  1:1279286/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  1:390739/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  1:1421767/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  1:1246007/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  1:1178594/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  1:105832/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  1:1955287/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  1:1891754/140‑1 (MQ=255)
                         tAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGAGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              <  2:716824/140‑1 (MQ=255)
                            aGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAg                                                                                                           <  2:1062898/140‑1 (MQ=255)
                                 tCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAata                                                                                                      <  2:156493/140‑1 (MQ=255)
                                  cgcgATTACTACCTGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATTGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAatat                                                                                                     >  2:412018/1‑140 (MQ=255)
                                  cgcgATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGca                                                                                                              >  2:1264756/1‑131 (MQ=255)
                                  cgcgATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAatat                                                                                                     >  2:645317/1‑140 (MQ=255)
                                  cgcgATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAatat                                                                                                     >  2:170302/1‑140 (MQ=255)
                                         actacCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTg                                                                                              <  1:208635/140‑1 (MQ=255)
                                         actacCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTg                                                                                              <  1:1649271/140‑1 (MQ=255)
                                         actacCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTg                                                                                              <  2:891771/140‑1 (MQ=255)
                                                      gtgtGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCa                                                                                 <  1:1739330/140‑1 (MQ=255)
                                                      gtgtGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCa                                                                                 <  2:758363/140‑1 (MQ=255)
                                                       tgtgGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCAc                                                                                >  2:171331/1‑140 (MQ=255)
                                                        gtgGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACg                                                                               >  1:972632/1‑140 (MQ=255)
                                                          ggCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGc                                                                             >  2:233968/1‑140 (MQ=255)
                                                           gCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCa                                                                                 >  2:42812/1‑135 (MQ=255)
                                                           gCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGcc                                                                            >  2:1525319/1‑140 (MQ=255)
                                                           gCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGcc                                                                            >  1:500371/1‑140 (MQ=255)
                                                            cGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCT‑‑GGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTa                                                                         <  2:456020/140‑1 (MQ=255)
                                                              aCGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTa                                                                         <  1:336066/140‑1 (MQ=255)
                                                              aCGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTa                                                                         <  2:543926/140‑1 (MQ=255)
                                                              aCGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTa                                                                         <  1:346008/140‑1 (MQ=255)
                                                               cGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTaa                                                                        <  2:1310953/140‑1 (MQ=255)
                                                                      gTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTAt                                                                 <  1:1663943/140‑1 (MQ=255)
                                                                            cgcgATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACttt                                                           <  1:2008220/140‑1 (MQ=255)
                                                                              cgATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTAt                                                         <  2:1928907/140‑1 (MQ=255)
                                                                               gATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATg                                                        <  1:100066/140‑1 (MQ=255)
                                                                                aTTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATgc                                                       <  1:247011/140‑1 (MQ=255)
                                                                                     cGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTgg                                                  <  1:170302/140‑1 (MQ=255)
                                                                                           gcgTGCCATCGTAAACC‑GCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGactact                                           <  2:2049878/140‑1 (MQ=255)
                                                                                              tGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTgg                                         >  2:1205864/1‑140 (MQ=255)
                                                                                                  aTCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCtt                                     >  2:1983917/1‑140 (MQ=255)
                                                                                                      tAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCgg                                 <  1:116651/140‑1 (MQ=255)
                                                                                                      tAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCgg                                 <  2:101608/140‑1 (MQ=255)
                                                                                                       aaaCCTGCTATATGGCGGCAAGCGCGTCAAGGAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCgg                                 <  2:1885017/140‑1 (MQ=255)
                                                                                                           cTGCTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCAtct                            >  2:378434/1‑140 (MQ=255)
                                                                                                              cTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATctctt                         >  2:640886/1‑139 (MQ=255)
                                                                                                              cTATATGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATctctt                         >  2:1688881/1‑139 (MQ=255)
                                                                                                               tataTGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTgt                        >  2:1807369/1‑139 (MQ=255)
                                                                                                                atatGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGt                       <  2:174811/140‑1 (MQ=255)
                                                                                                                atatGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGt                       <  1:1525319/140‑1 (MQ=255)
                                                                                                                atatGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGt                       <  1:2108967/140‑1 (MQ=255)
                                                                                                                 tatGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTc                      <  1:1639227/140‑1 (MQ=255)
                                                                                                                   tGGCGGCAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTctg                    <  1:2046929/140‑1 (MQ=255)
                                                                                                                        gcAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCAtctc                           >  1:439020/1‑128 (MQ=255)
                                                                                                                         cAAGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGc                                >  1:420789/1‑122 (MQ=255)
                                                                                                                           aGCGCGTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAAt            <  1:1873236/140‑1 (MQ=255)
                                                                                                                                gTCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCgctg       <  1:1753266/140‑1 (MQ=255)
                                                                                                                                 tCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCgctgc      <  2:1484224/140‑1 (MQ=255)
                                                                                                                                 tCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCgctgc      <  2:1585870/140‑1 (MQ=255)
                                                                                                                                 tCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCgctgc      <  1:1688881/140‑1 (MQ=255)
                                                                                                                                 tCAA‑GAATCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCgctgc      >  1:74918/1‑140 (MQ=255)
                                                                                                                                   aa‑gaatCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTa    <  2:581694/140‑1 (MQ=255)
                                                                                                                                   aa‑gaatCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTa    <  1:645317/140‑1 (MQ=255)
                                                                                                                                    a‑gaatCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTAt   <  1:115106/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAA‑GAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATC  >  NC_000913/429346‑429618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A