Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 431,143 C→A G291C (GGT→TGT)  tsx ← nucleoside‑specific channel‑forming protein Tsx

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913431,1430CA100.0% 379.3 / NA 110G291C (GGT→TGT) tsxnucleoside‑specific channel‑forming protein Tsx
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (62/48);  total (62/48)

Only 100 of 117 total aligned reads displayed.

GCAATATATTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACCTACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACAGAGTAGTGCCAGTGATCGTA  >  NC_000913/431006‑431278
                                                                                                                                         |                                                                                                                                       
gCAATATATTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACata                                                                                                                                       >  1:1013074/1‑140 (MQ=255)
gCAATATATTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACata                                                                                                                                       >  2:145880/1‑140 (MQ=255)
  aaTATATTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACatact                                                                                                                                     <  2:890374/140‑1 (MQ=255)
  aaTATATTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACatact                                                                                                                                     <  2:315822/140‑1 (MQ=255)
  aaTATATTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACatact                                                                                                                                     >  2:132998/1‑140 (MQ=255)
    tatatTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACAtactac                                                                                                                                   >  2:848970/1‑140 (MQ=255)
     atatTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTAcc                                                                                                                                  <  1:2126330/140‑1 (MQ=255)
       atTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAg                                                                                                                                <  2:1276911/140‑1 (MQ=255)
         tGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAATTTGTAACATACTACCAGGt                                                                                                                              >  2:1721616/1‑140 (MQ=255)
         tGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGt                                                                                                                              <  1:994490/140‑1 (MQ=255)
           aaTTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTaa                                                                                                                            >  1:1900615/1‑140 (MQ=255)
           aaTTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTaa                                                                                                                            >  2:1014791/1‑140 (MQ=255)
              ttACGTGATTTTGTTGGCTGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAacca                                                                                                                         >  1:1402124/1‑140 (MQ=255)
               tACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAaccac                                                                                                                        >  2:915378/1‑140 (MQ=255)
                aCGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAaccacc                                                                                                                       >  2:316982/1‑140 (MQ=255)
                aCGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAaccacc                                                                                                                       <  2:582750/140‑1 (MQ=255)
                aCGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAaccacc                                                                                                                       >  2:820922/1‑140 (MQ=255)
                aCGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAaccacc                                                                                                                       >  1:1930741/1‑140 (MQ=255)
                aCGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAaccacc                                                                                                                       >  2:1051518/1‑140 (MQ=255)
                aCGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAaccacc                                                                                                                       >  1:1517904/1‑140 (MQ=255)
                     cTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGc                                                                                                                  >  1:1704636/1‑140 (MQ=255)
                     cTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGc                                                                                                                  >  2:1242749/1‑140 (MQ=255)
                     cTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGc                                                                                                                  >  2:518892/1‑140 (MQ=255)
                         tgttgGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGt                                                                                                              <  1:1967936/140‑1 (MQ=255)
                               ccGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCCCCCCAGCCGGTAGAGCg                                                                                                        <  2:1900615/140‑1 (MQ=255)
                               ccGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCg                                                                                                        <  1:1436026/140‑1 (MQ=255)
                                cGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGa                                                                                                       >  2:1536555/1‑140 (MQ=255)
                                cGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTAATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGa                                                                                                       >  1:784227/1‑140 (MQ=255)
                                  gACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAAc                                                                                                     >  2:1544892/1‑140 (MQ=255)
                                  gACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAAc                                                                                                     >  1:1810169/1‑140 (MQ=255)
                                         cGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAg                                                                                              <  1:820922/140‑1 (MQ=255)
                                             tACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAgttgc                                                                                          >  2:1637670/1‑140 (MQ=255)
                                             tACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAgttgc                                                                                          >  1:1055178/1‑140 (MQ=255)
                                               cgccgcATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAgttgccg                                                                                        >  1:1833400/1‑140 (MQ=255)
                                                   gcATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAgttgccgttgc                                                                                    <  2:484560/140‑1 (MQ=255)
                                                   gcATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAgttgccgttgc                                                                                    >  1:1970556/1‑140 (MQ=255)
                                                    cATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAgttgccgttgcc                                                                                   >  2:2045548/1‑140 (MQ=255)
                                                     aTCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGttgccgttgccg                                                                                  <  1:1051518/140‑1 (MQ=255)
                                                     aTCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGttgccgttgccg                                                                                  <  2:1704636/140‑1 (MQ=255)
                                                     aTCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGttgccgttgccg                                                                                  <  1:1916548/140‑1 (MQ=255)
                                                        cGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAag                                                                               <  2:1752683/140‑1 (MQ=255)
                                                          gCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAagtt                                                                             <  1:1302038/140‑1 (MQ=255)
                                                          gCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAagtt                                                                             <  2:1833400/140‑1 (MQ=255)
                                                             tGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAagttcag                                                                          <  1:915378/140‑1 (MQ=255)
                                                                aCAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAagttcagttc                                                                       >  1:398845/1‑140 (MQ=255)
                                                                    aGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCa                                                                   >  1:1656656/1‑140 (MQ=255)
                                                                     gCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCAt                                                                  <  1:307801/140‑1 (MQ=255)
                                                                         acGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCAtcgtc                                                              >  1:1112639/1‑140 (MQ=255)
                                                                           gttgttAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATcgtcgt                                                            >  2:1722533/1‑140 (MQ=255)
                                                                              gttAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTcc                                                         >  1:2011327/1‑140 (MQ=255)
                                                                               ttAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCa                                                        >  2:1836126/1‑140 (MQ=255)
                                                                                tAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCAc                                                       >  2:1965302/1‑140 (MQ=255)
                                                                                   aaaTCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGa                                                    <  2:1342557/139‑1 (MQ=255)
                                                                                    aaTCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCAGAAGTTCAGTTCTGCATCGTCGTTCCACTGac                                                   <  1:1536555/140‑1 (MQ=255)
                                                                                     aTCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGacc                                                  >  1:414769/1‑140 (MQ=255)
                                                                                     aTCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGacc                                                  >  1:2146889/1‑140 (MQ=255)
                                                                                     aTCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGacc                                                  >  1:367106/1‑140 (MQ=255)
                                                                                      tCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGacca                                                 >  2:1216207/1‑140 (MQ=255)
                                                                                      tCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGacca                                                 >  2:1347935/1‑140 (MQ=255)
                                                                                      tCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGacca                                                 >  1:743932/1‑140 (MQ=255)
                                                                                      tCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTA‑CAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGaccac                                                >  2:616017/1‑140 (MQ=255)
                                                                                       cAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGaccac                                                >  1:339398/1‑140 (MQ=255)
                                                                                       cAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGaccac                                                >  2:1825874/1‑140 (MQ=255)
                                                                                       cAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGaccac                                                >  1:476536/1‑140 (MQ=255)
                                                                                         gAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGaccacct                                              >  2:577397/1‑139 (MQ=255)
                                                                                         gAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGaccacct                                              >  2:1720262/1‑139 (MQ=255)
                                                                                         gAAATGCCGGGAATAAATCCAGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGaccacct                                              >  2:555615/1‑139 (MQ=255)
                                                                                          aaaTGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACcgt                                             <  1:132998/140‑1 (MQ=255)
                                                                                          aaaTGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACcgt                                             <  2:1517904/140‑1 (MQ=255)
                                                                                            aTGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACcgtcg                                           >  2:262509/1‑140 (MQ=255)
                                                                                              gCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTg                                         >  2:2123496/1‑140 (MQ=255)
                                                                                                  ggAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAg                                     >  1:1526311/1‑140 (MQ=255)
                                                                                                    aaTAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACACCAGCCGGTAGAGCGAACGTTGAAGTTGTCGTTGCCGAAGTTCAGTTCTGCTTCGTCGTTCCACTGACCACCGTAGTGCCAGTa                                   >  2:1584660/1‑140 (MQ=255)
                                                                                                     aTAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTaa                                  <  1:1544892/140‑1 (MQ=255)
                                                                                                     aTAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTaa                                  <  1:736295/140‑1 (MQ=255)
                                                                                                     aTAAATCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTaa                                  <  2:2011327/140‑1 (MQ=255)
                                                                                                          tCCCGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGc                             <  2:1112639/140‑1 (MQ=255)
                                                                                                          acccGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGc                             <  2:316835/139‑1 (MQ=255)
                                                                                                            ccGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTa                           <  1:1135397/140‑1 (MQ=255)
                                                                                                             cGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGc                             <  2:1539267/137‑1 (MQ=255)
                                                                                                             cGGCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGc                             >  1:1539267/1‑137 (MQ=255)
                                                                                                              ggCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACg                         >  2:1998033/1‑140 (MQ=255)
                                                                                                              ggCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACg                         >  2:1000383/1‑140 (MQ=255)
                                                                                                              ggCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACg                         >  1:1588249/1‑140 (MQ=255)
                                                                                                              ggCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACg                         >  2:766722/1‑140 (MQ=255)
                                                                                                               gCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGa                        <  2:1402124/140‑1 (MQ=255)
                                                                                                               gCATTTTCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGa                        <  1:1825874/140‑1 (MQ=255)
                                                                                                                    ttCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACagag                   <  1:2045548/140‑1 (MQ=255)
                                                                                                                    ttCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACagag                   <  1:1064399/140‑1 (MQ=255)
                                                                                                                    ttCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACagag                   <  1:1623140/140‑1 (MQ=255)
                                                                                                                    ttCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACagag                   <  2:1055178/140‑1 (MQ=255)
                                                                                                                    ttCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACagag                   <  2:2146889/140‑1 (MQ=255)
                                                                                                                    ttCATAATCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACagag                   <  2:1796995/140‑1 (MQ=255)
                                                                                                                         aaTCAGAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACAGAGTAGTg              <  1:1347935/140‑1 (MQ=255)
                                                                                                                              gAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACAGAGTAGTGCCAGt         <  1:627075/140‑1 (MQ=255)
                                                                                                                              gAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACAGAGTAGTGCCAGt         <  1:2044139/140‑1 (MQ=255)
                                                                                                                              gAAGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACAGAGTAGTGCCAGt         <  1:516188/140‑1 (MQ=255)
                                                                                                                                aGTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACAGAGTAGTGCCAGTGa       <  2:339398/140‑1 (MQ=255)
                                                                                                                                 gTTGTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACAGAGTAGTGCCAGTGAt      >  2:1827240/1‑140 (MQ=255)
                                                                                                                                    gTAACATACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACAGAGTAGTGCCAGTGATCGt   <  1:1053154/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GCAATATATTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAAGCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAATCAGAAGTTGTAACCTACTACCAGGTAACCACCCCAGCCGGTAGAGCGAACGTTGAAGTTGCCGTTGCCGAAGTTCAGTTCTGCATCGTCGTTCCACTGACCACCGTCGTGCCAGTAACGAGCTACGACAGAGTAGTGCCAGTGATCGTA  >  NC_000913/431006‑431278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A