Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	436,977	C→A	P130Q (CCG→CAG)	pgpA →	phosphatidylglycerophosphatase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	436,977	0	C	A	100.0%	303.1 / NA	88	P130Q (CCG→CAG)	pgpA	phosphatidylglycerophosphatase A
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (45/43); total (45/43)

TCATGGCAGCATTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTG  >  NC_000913/436846‑437112

tCATGGCAGCATTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCt                                                                                                                                 >  2:917968/1‑140 (MQ=255)

 cATGGCAGCATTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCtt                                                                                                                                >  2:693500/1‑139 (MQ=255)

     gcagcaTTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGttt                                                                                                                            >  2:827294/1‑140 (MQ=255)

         caTTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGAtt                                                                                                                        >  2:1092296/1‑139 (MQ=255)

         caTTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATc                                                                                                                        >  2:549201/1‑140 (MQ=255)

          aTTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCg                                                                                                                       >  2:1075129/1‑140 (MQ=255)

          aTTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCg                                                                                                                       >  2:603146/1‑140 (MQ=255)

            tGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCa                                                                                                                     <  2:150519/140‑1 (MQ=255)

            tGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCa                                                                                                                     <  1:1765543/140‑1 (MQ=255)

               cTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAAtg                                                                                                                  >  2:1465879/1‑140 (MQ=255)

                      gAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATgg                                                                                                           <  2:1629825/140‑1 (MQ=255)

                        aTTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATggcg                                                                                                         >  2:1617613/1‑140 (MQ=255)

                        aTTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATggcg                                                                                                         >  2:169419/1‑140 (MQ=255)

                        aTTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATggcg                                                                                                         >  2:1270698/1‑140 (MQ=255)

                           tATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCa                                                                                                      <  1:1737934/140‑1 (MQ=255)

                           tATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCa                                                                                                      <  2:1241901/140‑1 (MQ=255)

                           tATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCa                                                                                                      <  1:1025387/140‑1 (MQ=255)

                            aTTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCAt                                                                                                     <  1:1465879/140‑1 (MQ=255)

                             ttGGTTTGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCAtt                                                                                                    >  2:1393825/1‑139 (MQ=255)

                             ttGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATg                                                                                                    <  1:813757/140‑1 (MQ=255)

                                gTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATtggg                                                                                                 <  1:1723743/140‑1 (MQ=255)

                                gTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATgggg                                                                                                 <  1:230307/140‑1 (MQ=255)

                                gTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATgggg                                                                                                 <  1:684016/140‑1 (MQ=255)

                                   tgtgGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGAtt                                                                                              >  2:40426/1‑139 (MQ=255)

                                   tgtgGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATc                                                                                              >  2:1883149/1‑140 (MQ=255)

                                    gtgGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCa                                                                                             >  2:1284948/1‑140 (MQ=255)

                                     tgGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCAt                                                                                            >  2:632057/1‑140 (MQ=255)

                                          cACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATcg                                                                                       >  2:312823/1‑140 (MQ=255)

                                           aCGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATcga                                                                                      >  2:587720/1‑140 (MQ=255)

                                           aCGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATcga                                                                                      >  2:783017/1‑140 (MQ=255)

                                           aCGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATcga                                                                                      <  1:1058625/140‑1 (MQ=255)

                                           aCGCTCATGGCGCTACCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATcga                                                                                      >  2:225876/1‑140 (MQ=255)

                                             gCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATcgacg                                                                                    <  2:1716264/140‑1 (MQ=255)

                                                 aTGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGatat                                                                                >  2:2028786/1‑140 (MQ=255)

                                                       cTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGc                                                                          <  1:2028786/140‑1 (MQ=255)

                                                        tGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGcc                                                                         >  2:537555/1‑140 (MQ=255)

                                                        tGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGcc                                                                         <  1:1284948/140‑1 (MQ=255)

                                                             aCCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCggggg                                                                    >  2:2059458/1‑139 (MQ=255)

                                                             aCCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGt                                                                    >  2:625201/1‑140 (MQ=255)

                                                                   gACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTc                                                              <  1:1092296/140‑1 (MQ=255)

                                                                     cTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCg                                                            <  1:549201/140‑1 (MQ=255)

                                                                       ggCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCa                                                          <  1:1689775/140‑1 (MQ=255)

                                                                       ggCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCa                                                          >  2:2141215/1‑140 (MQ=255)

                                                                        gCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAg                                                         <  1:149575/140‑1 (MQ=255)

                                                                        gCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAg                                                         <  1:312823/140‑1 (MQ=255)

                                                                         cAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAgg                                                        <  1:40426/140‑1 (MQ=255)

                                                                          aGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGc                                                       <  1:1127601/140‑1 (MQ=255)

                                                                          aGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGc                                                       <  1:917968/140‑1 (MQ=255)

                                                                          aGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGc                                                       <  2:799512/140‑1 (MQ=255)

                                                                          aGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGc                                                       <  1:783017/140‑1 (MQ=255)

                                                                           gTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCa                                                      <  1:2141215/140‑1 (MQ=255)

                                                                             gggTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATc                                                    <  2:254370/140‑1 (MQ=255)

                                                                             gggTTGCCGCCGGGTTTGTGATCTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATc                                                    <  1:318403/140‑1 (MQ=255)

                                                                                  gccgccGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTa                                               >  2:2026452/1‑140 (MQ=255)

                                                                                  gccgccGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTa                                               >  2:458576/1‑140 (MQ=255)

                                                                                  gccgccGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTa                                               >  2:517096/1‑140 (MQ=255)

                                                                                        gggTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTAt                                         >  2:1017757/1‑140 (MQ=255)

                                                                                            ttGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGt                                     <  1:1075129/140‑1 (MQ=255)

                                                                                              gtgATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGtca                                   >  2:339025/1‑140 (MQ=255)

                                                                                                  ttttCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCAc                               <  1:1270698/140‑1 (MQ=255)

                                                                                                    ttCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTg                             >  2:333504/1‑140 (MQ=255)

                                                                                                    ttCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTg                             >  1:1697967/1‑140 (MQ=255)

                                                                                                     tCCGTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTgg                            >  1:1391563/1‑140 (MQ=255)

                                                                                                        gTATTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCg                         <  1:161443/140‑1 (MQ=255)

                                                                                                          aTTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCt                       <  1:157866/140‑1 (MQ=255)

                                                                                                          aTTCTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCt                       <  1:333504/140‑1 (MQ=255)

                                                                                                             cTGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTggg                    <  1:652055/140‑1 (MQ=255)

                                                                                                              tGGATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGt                   >  1:1584665/1‑140 (MQ=255)

                                                                                                                gATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTgg                            <  1:1989891/129‑1 (MQ=255)

                                                                                                                gATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTgg                            >  2:1989891/1‑129 (MQ=255)

                                                                                                                gATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTAt                 <  1:827294/140‑1 (MQ=255)

                                                                                                                gATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTAt                 <  1:458576/140‑1 (MQ=255)

                                                                                                                gATATGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTAt                 <  1:603146/140‑1 (MQ=255)

                                                                                                                  tatGTGGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTc               <  1:2026452/140‑1 (MQ=255)

                                                                                                                     gtgGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGt            >  2:884456/1‑140 (MQ=255)

                                                                                                                      tgGAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTc           >  1:926032/1‑140 (MQ=255)

                                                                                                                       ggAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCg          <  1:693500/140‑1 (MQ=255)

                                                                                                                       ggAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCg          <  1:339025/140‑1 (MQ=255)

                                                                                                                        gAAGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGt         >  1:1724034/1‑140 (MQ=255)

                                                                                                                          aGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAg       >  1:834963/1‑140 (MQ=255)

                                                                                                                          aGCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAg       <  1:587720/140‑1 (MQ=255)

                                                                                                                           gCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAg       <  1:338335/139‑1 (MQ=255)

                                                                                                                           gCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAg       >  2:338335/1‑139 (MQ=255)

                                                                                                                           gCCGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGt      >  2:508811/1‑140 (MQ=255)

                                                                                                                             cGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTtg    >  1:1308063/1‑140 (MQ=255)

                                                                                                                             cGTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTtg    >  1:470947/1‑140 (MQ=255)

                                                                                                                              gTGGCAGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTtgt   >  1:2127197/1‑140 (MQ=255)

                                                                                                                               tGGCAGATCCGCTGGTTTGATCACAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTtgtt  >  2:709777/1‑139 (MQ=255)

TCATGGCAGCATTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTG  >  NC_000913/436846‑437112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A