Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 444,851 C→A Q57K (CAG→AAG)  yajQ → nucleotide binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913444,8510CA100.0% 468.2 / NA 134Q57K (CAG→AAG) yajQnucleotide binding protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (41/93);  total (41/93)

Only 100 of 137 total aligned reads displayed.

ATCTTCAGGAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCCAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGAAACTGAAAC  >  NC_000913/444714‑444980
                                                                                                                                         |                                                                                                                                 
aTCTTCAGGAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAg                                                                                                                                 >  1:1057345/1‑140 (MQ=255)
aTCTTCAGGAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAg                                                                                                                                 >  1:49330/1‑140 (MQ=255)
  cTTCAGGAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGt                                                                                                                               >  2:827631/1‑140 (MQ=255)
      aGGAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAAt                                                                                                                           <  2:321666/140‑1 (MQ=255)
      aGGAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAAt                                                                                                                           <  2:1782077/140‑1 (MQ=255)
       ggAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATc                                                                                                                          <  2:1929156/140‑1 (MQ=255)
       ggAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATc                                                                                                                          <  1:863961/140‑1 (MQ=255)
       ggAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATc                                                                                                                          <  1:587661/140‑1 (MQ=255)
       ggAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATc                                                                                                                          <  1:2013654/140‑1 (MQ=255)
       ggAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATc                                                                                                                          <  2:864513/140‑1 (MQ=255)
         aaGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGCGTTGAGCGAGTCCGATTTCAAGGTCAATCAg                                                                                                                        <  2:634372/140‑1 (MQ=255)
           gCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGtt                                                                                                                      <  1:895735/140‑1 (MQ=255)
           gCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGtt                                                                                                                      <  2:847161/140‑1 (MQ=255)
           gCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGtt                                                                                                                      <  1:1214506/140‑1 (MQ=255)
           gCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGtt                                                                                                                      <  2:1190546/140‑1 (MQ=255)
           gCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGtt                                                                                                                      <  2:1306952/140‑1 (MQ=255)
            cACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTg                                                                                                                     >  2:1642884/1‑140 (MQ=255)
            cACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTg                                                                                                                     >  1:597402/1‑140 (MQ=255)
            cACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTg                                                                                                                     >  1:2053257/1‑140 (MQ=255)
              cGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCt                                                                                                                   >  1:1657632/1‑140 (MQ=255)
                tAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGt                                                                                                                       <  1:657772/134‑1 (MQ=255)
                tAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGt                                                                                                                       >  2:657772/1‑134 (MQ=255)
                  aCGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGat                                                                                                               >  1:864630/1‑140 (MQ=255)
                      ggTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTc                                                                                                           >  2:1632234/1‑140 (MQ=255)
                      ggTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTc                                                                                                           >  1:125280/1‑140 (MQ=255)
                         cGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGc                                                                                                        >  2:209364/1‑140 (MQ=255)
                            tAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTg                                                                                                     <  1:774828/140‑1 (MQ=255)
                               cgcgAGCCGCGAAGTTGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCa                                                                                                  <  2:1969907/140‑1 (MQ=255)
                               cgcgAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCa                                                                                                  <  1:1284133/140‑1 (MQ=255)
                               cgcgAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCa                                                                                                  <  1:1083204/140‑1 (MQ=255)
                               cgcgAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGATGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCTGTTTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCa                                                                                                  <  1:1914172/140‑1 (MQ=255)
                               agcgAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCa                                                                                                  <  2:641892/139‑1 (MQ=255)
                                  gAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAgc                                                                                               <  1:1839797/140‑1 (MQ=255)
                                  aaGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAgc                                                                                               <  2:722417/139‑1 (MQ=255)
                                    gCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCa                                                                                                  >  2:1958186/1‑135 (MQ=255)
                                    gCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCa                                                                                                  <  1:1958186/135‑1 (MQ=255)
                                     ccGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAgctgt                                                                                            >  2:564799/1‑139 (MQ=255)
                                        cgAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGa                                                                                         >  2:1601014/1‑140 (MQ=255)
                                         gAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGACAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGaa                                                                                        <  1:1551912/140‑1 (MQ=255)
                                          aaGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAg                                                                                       >  1:344394/1‑140 (MQ=255)
                                            gTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAgcg                                                                                     <  1:761293/140‑1 (MQ=255)
                                              ggAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGcgcg                                                                                   <  2:1723058/140‑1 (MQ=255)
                                              ggAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGcgcg                                                                                   <  2:1374584/140‑1 (MQ=255)
                                              ggAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGcgcg                                                                                   <  1:612357/140‑1 (MQ=255)
                                              ggAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGcgcg                                                                                   <  2:110205/140‑1 (MQ=255)
                                              ggAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGcgcg                                                                                   <  2:597402/140‑1 (MQ=255)
                                              ggAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGGCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGcgcg                                                                                   <  1:200176/140‑1 (MQ=255)
                                              ggAGTCACGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGcgcg                                                                                   <  2:357382/140‑1 (MQ=255)
                                                aGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGc                                                                                 >  1:818318/1‑140 (MQ=255)
                                                aGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGc                                                                                 >  1:1675142/1‑140 (MQ=255)
                                                  tCCCATTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCAt                                                                               >  1:1750556/1‑140 (MQ=255)
                                                     cGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGa                                                                            >  1:1665520/1‑140 (MQ=255)
                                                       ttttGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAg                                                                          >  1:1141244/1‑140 (MQ=255)
                                                        tttGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAgg                                                                         <  1:1632234/140‑1 (MQ=255)
                                                        tttGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAgg                                                                         <  1:1642884/140‑1 (MQ=255)
                                                        tttGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAgg                                                                         <  2:80932/140‑1 (MQ=255)
                                                         ttGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGc                                                                        <  1:730549/140‑1 (MQ=255)
                                                          tGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCa                                                                       <  1:727439/140‑1 (MQ=255)
                                                          tGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCa                                                                       >  1:1724389/1‑140 (MQ=255)
                                                          tGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCa                                                                       <  2:405567/140‑1 (MQ=255)
                                                           gACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAg                                                                      <  2:1675142/140‑1 (MQ=255)
                                                               tCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCg                                                                  <  1:450514/140‑1 (MQ=255)
                                                               tCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCg                                                                  <  1:1135661/140‑1 (MQ=255)
                                                                 cGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGt                                                                     >  2:1507923/1‑135 (MQ=255)
                                                                 cGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCt                                                                <  1:102415/140‑1 (MQ=255)
                                                                 cGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATACTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGt                                                                     <  1:1507923/135‑1 (MQ=255)
                                                                  gTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTg                                                               <  2:575491/140‑1 (MQ=255)
                                                                   tAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTgg                                                              <  2:373293/140‑1 (MQ=255)
                                                                   tAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTgg                                                              <  2:1149733/140‑1 (MQ=255)
                                                                      cGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATg                                                           <  1:1211156/140‑1 (MQ=255)
                                                                      agTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATg                                                           <  2:910774/139‑1 (MQ=255)
                                                                      agTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATg                                                           <  2:34377/139‑1 (MQ=255)
                                                                      agTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATg                                                           <  2:755152/139‑1 (MQ=255)
                                                                        ttGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTa                                                         <  2:1665520/140‑1 (MQ=255)
                                                                        ttGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTa                                                         <  2:675515/140‑1 (MQ=255)
                                                                        ttGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTa                                                         <  1:197503/140‑1 (MQ=255)
                                                                             gCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGga                                                    <  2:125280/140‑1 (MQ=255)
                                                                             gCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGga                                                    <  2:1724389/140‑1 (MQ=255)
                                                                             gCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGga                                                    <  2:1722391/140‑1 (MQ=255)
                                                                               cTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGgaga                                                  <  1:564799/140‑1 (MQ=255)
                                                                                tCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGaa                                                 >  1:660331/1‑140 (MQ=255)
                                                                                  aTTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAata                                               >  2:1543246/1‑140 (MQ=255)
                                                                                  aTTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAata                                               <  1:513374/140‑1 (MQ=255)
                                                                                       aGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGtt                                          >  1:1548129/1‑140 (MQ=255)
                                                                                       aGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGtt                                          >  2:35971/1‑140 (MQ=255)
                                                                                       aGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGtt                                          <  1:209364/140‑1 (MQ=255)
                                                                                            aaCGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAg                                     >  1:1131039/1‑140 (MQ=255)
                                                                                               gacgCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCgg                                  <  2:1057345/140‑1 (MQ=255)
                                                                                               gacgCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCgg                                  <  2:49330/140‑1 (MQ=255)
                                                                                                      gCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAAcc                           >  2:1917970/1‑140 (MQ=255)
                                                                                                                cAAAGTGTTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTtgtgt                 >  2:2079506/1‑139 (MQ=255)
                                                                                                                    gtgtTGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGc             <  2:301929/140‑1 (MQ=255)
                                                                                                                       ttGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGaa          >  1:1371074/1‑140 (MQ=255)
                                                                                                                        tGAGCGAGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGaaa         <  1:1917970/140‑1 (MQ=255)
                                                                                                                              aGTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGAAACTGaaa   >  2:1011272/1‑140 (MQ=255)
                                                                                                                               gTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGAAACTGAAAc  <  2:2099406/140‑1 (MQ=255)
                                                                                                                               gTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGAAACTGAAAc  >  2:758691/1‑140 (MQ=255)
                                                                                                                               gTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGAAACTGAAAc  <  2:1548129/140‑1 (MQ=255)
                                                                                                                               gTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGAAACTGAAAc  <  1:464365/140‑1 (MQ=255)
                                                                                                                               gTCCGATTTCAAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGAAACTGAAAc  >  2:987943/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                 
ATCTTCAGGAAGCACGTAACGCGGTCGATAACGCGAGCCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACGACGCCAGCAAAACCATCAAAGTGTTGAGCGAGTCCGATTTCCAGGTCAATCAGTTGCTGGATATTCTGCGTGCCAAGCTGCTGAAGCGCGGCATTGAAGGCAGTTCGCTGGATGTACCGGAGAATATCGTTCATAGCGGTAAAACCTGGTTTGTGGAAGCGAAACTGAAAC  >  NC_000913/444714‑444980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A