Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	453,594	G→T	R192S (CGT→AGT)	yajG ←	putative lipoprotein YajG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	453,594	0	G	T	100.0%	296.3 / NA	87	R192S (CGT→AGT)	yajG	putative lipoprotein YajG
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (42/45); total (42/45)

GGCGAGCGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACGCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTCAACGTTGTAGCTGGC  >  NC_000913/453459‑453729

ggCGAGCGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAActcgcg                                                                                                                                     >  1:817162/1‑140 (MQ=255)

  cGAGCGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGtt                                                                                                                                   >  1:985050/1‑140 (MQ=255)

   gAGCGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGttt                                                                                                                                  >  1:657026/1‑139 (MQ=255)

   gAGCGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTc                                                                                                                                  <  2:406693/140‑1 (MQ=255)

    aGCGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCt                                                                                                                                 >  2:1503816/1‑140 (MQ=255)

    aGCGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCt                                                                                                                                 >  1:1786661/1‑140 (MQ=255)

     gCGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTg                                                                                                                                <  2:1053318/140‑1 (MQ=255)

      cGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTgt                                                                                                                               >  2:1614248/1‑139 (MQ=255)

           gCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTtgat                                                                                                                          <  2:957619/140‑1 (MQ=255)

                 aaGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTc                                                                                                                    >  1:1767932/1‑140 (MQ=255)

                   gCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGt                                                                                                                  >  1:1027483/1‑140 (MQ=255)

                      aaaCCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGa                                                                                                               <  1:1283849/140‑1 (MQ=255)

                           cAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTg                                                                                                          <  1:2079382/140‑1 (MQ=255)

                           cAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTg                                                                                                          <  2:617118/140‑1 (MQ=255)

                            aGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTgg                                                                                                         <  2:817162/140‑1 (MQ=255)

                            aGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTgg                                                                                                         <  1:1931342/140‑1 (MQ=255)

                                 cAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTcc                                                                                                    <  1:1591170/140‑1 (MQ=255)

                                 cAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGAGTcc                                                                                                    <  1:1724035/140‑1 (MQ=255)

                                   gCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTg                                                                                                  >  1:680474/1‑140 (MQ=255)

                                   gCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTg                                                                                                  >  1:696033/1‑140 (MQ=255)

                                    cAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTga                                                                                                 <  1:1503816/140‑1 (MQ=255)

                                    cAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTga                                                                                                 >  2:1176609/1‑140 (MQ=255)

                                    cAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTga                                                                                                 >  1:19860/1‑140 (MQ=255)

                                      atatGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTgaga                                                                                               <  1:1599731/140‑1 (MQ=255)

                                       tatGGGTTAACGTGGCTGTTAAAAAATACGTAAATGTTGACTGGGCATGGACGTCTGCAGACACGGTGGGCACTGGGCCAGAGGGCAGAAATTAACTCGCGGTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGAc                                                                                              >  2:2021623/1‑140 (MQ=255)

                                        atGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACa                                                                                             >  1:214303/1‑140 (MQ=255)

                                            cTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTTACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATc                                                                                         >  1:108137/1‑140 (MQ=255)

                                            cTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGgt                                                                                                        <  2:728928/125‑1 (MQ=255)

                                            cTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGgt                                                                                                        >  1:728928/1‑125 (MQ=255)

                                            cTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATc                                                                                         <  2:985050/140‑1 (MQ=255)

                                            cTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATc                                                                                         >  2:1027313/1‑140 (MQ=255)

                                            cTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATc                                                                                         >  1:827879/1‑140 (MQ=255)

                                            cTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATc                                                                                         <  1:582913/140‑1 (MQ=255)

                                            cTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAAATCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATc                                                                                         <  1:95959/140‑1 (MQ=255)

                                                aCGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCg                                                                                     <  2:1284196/140‑1 (MQ=255)

                                                 cgcgGCTGTTGAAAAATACGTAAATATTGATTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCgt                                                                                    >  2:1138928/1‑139 (MQ=255)

                                                 cgcgGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGa                                                                                    <  2:990968/140‑1 (MQ=255)

                                                 cgcgGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGa                                                                                    <  1:475804/140‑1 (MQ=255)

                                                 cgcgGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGa                                                                                    <  1:1027313/140‑1 (MQ=255)

                                                 cgcgGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGa                                                                                    >  1:1883462/1‑140 (MQ=255)

                                                 cgcgGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGa                                                                                    <  1:327194/140‑1 (MQ=255)

                                                    ggCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATgg                                                                                 >  2:1785551/1‑140 (MQ=255)

                                                     gCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGa                                                                                    <  1:360386/136‑1 (MQ=255)

                                                     gCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGa                                                                                    >  2:360386/1‑136 (MQ=255)

                                                      cTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTa                                                                               <  2:214303/140‑1 (MQ=255)

                                                      cTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTa                                                                               <  1:1785551/140‑1 (MQ=255)

                                                       tGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTAt                                                                              <  2:1745866/140‑1 (MQ=255)

                                                        gTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATc                                                                             <  2:1883462/140‑1 (MQ=255)

                                                           gAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGt                                                                          <  2:1786661/140‑1 (MQ=255)

                                                           gAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGt                                                                          <  1:963146/140‑1 (MQ=255)

                                                           gAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGt                                                                          <  1:1176609/140‑1 (MQ=255)

                                                           gAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGt                                                                          <  2:108137/140‑1 (MQ=255)

                                                                aTACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGca                                                                     <  1:674492/140‑1 (MQ=255)

                                                                aTACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGca                                                                     <  2:686927/140‑1 (MQ=255)

                                                                aTACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGca                                                                     <  2:696033/140‑1 (MQ=255)

                                                                  aCGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGcaca                                                                   <  1:1140918/140‑1 (MQ=255)

                                                                        atatTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTa                                                             <  2:680474/140‑1 (MQ=255)

                                                                                tGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATc                                                     >  1:1822891/1‑140 (MQ=255)

                                                                                 ggACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCg                                                    >  1:65363/1‑140 (MQ=255)

                                                                                 ggACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGCGGCCTGAGACATATCAGCGATGGTATCGGTTAGCACACTTTTAACCGCATct                                                    >  2:1154447/1‑139 (MQ=255)

                                                                                  gACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCgg                                                   >  2:589572/1‑140 (MQ=255)

                                                                                  gACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCgg                                                   >  2:838986/1‑140 (MQ=255)

                                                                                    cATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCg                                                 >  1:1935928/1‑140 (MQ=255)

                                                                                            tCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATAttttt                                         >  2:714611/1‑140 (MQ=255)

                                                                                            tCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATAttttt                                         >  2:973663/1‑140 (MQ=255)

                                                                                            tCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATAttttt                                         >  2:632419/1‑140 (MQ=255)

                                                                                              tACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTttgt                                       >  2:986466/1‑140 (MQ=255)

                                                                                                cAGGCCCGGCTTGCCCCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCTTCAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTttgttg                                     <  1:2021623/140‑1 (MQ=255)

                                                                                                cAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTttgttg                                     <  1:406090/140‑1 (MQ=255)

                                                                                                 aGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTgg                                    <  2:827879/140‑1 (MQ=255)

                                                                                                     ccGGCTTGCACCGGGCCAGAGGGCAGAAAGTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGc                                >  1:1902399/1‑140 (MQ=255)

                                                                                                      cGGCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGcc                               >  1:70554/1‑140 (MQ=255)

                                                                                                        gCTTGCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGAGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTg                             >  1:340198/1‑140 (MQ=255)

                                                                                                            gCACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAAc                         <  2:1767932/140‑1 (MQ=255)

                                                                                                             cACCGGGCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACg                        >  2:1892972/1‑140 (MQ=255)

                                                                                                                  ggCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCt                   >  2:1027321/1‑140 (MQ=255)

                                                                                                                  ggCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCt                   >  2:692891/1‑140 (MQ=255)

                                                                                                                  ggCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCt                   >  1:1996030/1‑140 (MQ=255)

                                                                                                                  ggCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCt                   >  2:160018/1‑140 (MQ=255)

                                                                                                                  ggCCAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGAGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCt                   >  1:1659035/1‑140 (MQ=255)

                                                                                                                    ccAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTc                 <  1:354087/140‑1 (MQ=255)

                                                                                                                    ccAGAGGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTc                 <  2:65363/140‑1 (MQ=255)

                                                                                                                        agGGCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTCAAct             >  2:1973186/1‑139 (MQ=255)

                                                                                                                         gggCAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCGCCTTCAACGt            <  2:70554/140‑1 (MQ=255)

                                                                                                                            cAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTc                 <  1:847652/132‑1 (MQ=255)

                                                                                                                            cAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTc                 >  2:847652/1‑132 (MQ=255)

                                                                                                                            cAGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTCAACGTTGt         >  2:646779/1‑140 (MQ=255)

                                                                                                                             aGAAATTAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTCAACGTTGTa        >  1:1652890/1‑140 (MQ=255)

                                                                                                                                  atAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTCAACGTTGTAGCTgg   <  2:657026/139‑1 (MQ=255)

                                                                                                                                   tAACTCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTCAACGTTGTAGCTGGc  <  1:1614248/140‑1 (MQ=255)

GGCGAGCGGTAGCCCGGAAGCAAAACCCAGGATCAGCAATATGGCTGAACGCGGCTGTTGAAAAATACGTAAATATTGACTGGACATGGGCGTCTACAGGCCCGGCTTGCACCGGGCCAGAGGGCAGAAATTAACGCGCGTTCTGCTTGATGAATTCGTGGATGCTGGTGTCCTGAGACATATCAGCGATGGTATCGGTCAGCACACTGTTAACCGCATCGGCGATATTTTTGTTGGAGGCCTGGAACGCACCTTCAACGTTGTAGCTGGC  >  NC_000913/453459‑453729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A