Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	483,348	G→T	F352L (TTC→TTA)	acrB ←	multidrug efflux pump RND permease AcrB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	483,348	0	G	T	100.0%	382.1 / NA	110	F352L (TTC→TTA)	acrB	multidrug efflux pump RND permease AcrB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (59/51); total (59/51)

Only 100 of 112 total aligned reads displayed.

TCCCGAACATTGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGGAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTCGCCAGTTCAGCA  >  NC_000913/483212‑483483

tCCCGAACATTGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAac                                                                                                                                      <  1:763129/140‑1 (MQ=255)

tCCCGAACATTGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAac                                                                                                                                      <  2:1253492/140‑1 (MQ=255)

tCCCGAACATTGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAac                                                                                                                                      >  2:1523606/1‑140 (MQ=255)

tCCCGAACATTGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAac                                                                                                                                      <  2:2056899/140‑1 (MQ=255)

tCCCGAACATTGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAac                                                                                                                                      >  2:2146063/1‑140 (MQ=255)

tCCCGAACATTGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAac                                                                                                                                      >  2:2151536/1‑140 (MQ=255)

          tGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGgatga                                                                                                                            >  1:1020978/1‑140 (MQ=255)

          tGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGgatga                                                                                                                            >  1:517198/1‑140 (MQ=255)

          tGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGgatga                                                                                                                            <  2:677134/140‑1 (MQ=255)

          tGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGgatga                                                                                                                            >  2:1770651/1‑140 (MQ=255)

          tGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGgatga                                                                                                                            >  2:2122053/1‑140 (MQ=255)

           gTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGgatgat                                                                                                                           >  2:188416/1‑140 (MQ=255)

            ttAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATc                                                                                                                          >  1:723962/1‑140 (MQ=255)

                  tgtTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCg                                                                                                                    >  1:1107390/1‑140 (MQ=255)

                  tgtTTATCGAGAACCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCg                                                                                                                    >  2:407149/1‑140 (MQ=255)

                    tttATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGAc                                                                                                                  >  1:392092/1‑140 (MQ=255)

                    tttATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGAc                                                                                                                  >  1:386597/1‑140 (MQ=255)

                    tttATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGAc                                                                                                                  >  1:461860/1‑140 (MQ=255)

                    tttATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGAc                                                                                                                  >  2:586515/1‑140 (MQ=255)

                    tttATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGAc                                                                                                                  >  1:534173/1‑140 (MQ=255)

                     ttATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGAcc                                                                                                                 <  2:1107390/140‑1 (MQ=255)

                     ttATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAG‑TACATAACCAGTAACACGAGGATGATCGCTTCGACCa                                                                                                                <  2:274552/140‑1 (MQ=255)

                      tATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCa                                                                                                                <  2:1687728/140‑1 (MQ=255)

                      tATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCa                                                                                                                <  2:614552/140‑1 (MQ=255)

                      tATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCa                                                                                                                <  1:1355681/140‑1 (MQ=255)

                      tATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCa                                                                                                                <  1:1756464/140‑1 (MQ=255)

                       aTCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAg                                                                                                               <  1:2151536/140‑1 (MQ=255)

                        tCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGc                                                                                                              <  1:1257030/140‑1 (MQ=255)

                            gaAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGttt                                                                                                          <  2:392092/140‑1 (MQ=255)

                             aaGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGtttt                                                                                                         >  1:2046892/1‑140 (MQ=255)

                             aaGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGtttt                                                                                                         >  2:653740/1‑140 (MQ=255)

                              aGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCa                                                                                                                <  2:50728/132‑1 (MQ=255)

                              aGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCa                                                                                                                >  1:50728/1‑132 (MQ=255)

                                ccAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAAc                                                                                                      <  2:534173/140‑1 (MQ=255)

                                ccAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAAc                                                                                                      <  1:555842/140‑1 (MQ=255)

                                ccAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAAc                                                                                                      <  2:386597/140‑1 (MQ=255)

                                ccAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAAc                                                                                                      <  1:2040536/140‑1 (MQ=255)

                                 cAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAAcc                                                                                                     <  1:1916279/140‑1 (MQ=255)

                                   aaGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCAc                                                                                                   <  1:2146063/140‑1 (MQ=255)

                                   aaGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCAc                                                                                                   <  2:373652/140‑1 (MQ=255)

                                    aGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACt                                                                                                  >  2:263716/1‑140 (MQ=255)

                                    aGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACt                                                                                                  >  2:1640215/1‑140 (MQ=255)

                                      gcggcAAGGACGGCAAAGGTCCCGAGCAATACCGCCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTc                                                                                                <  2:723962/140‑1 (MQ=255)

                                      gcggcAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTc                                                                                                <  2:517198/140‑1 (MQ=255)

                                          cAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGa                                                                                            >  1:290706/1‑140 (MQ=255)

                                              gACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATag                                                                                        <  1:188416/140‑1 (MQ=255)

                                                cGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATagag                                                                                      >  2:1011646/1‑140 (MQ=255)

                                                 ggCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAgaga                                                                                     >  1:1841489/1‑140 (MQ=255)

                                                 ggCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAgaga                                                                                     >  1:1515156/1‑140 (MQ=255)

                                                  gCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGAt                                                                                    >  2:1394856/1‑140 (MQ=255)

                                                   cAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGAtt                                                                                   <  1:3069/140‑1 (MQ=255)

                                                        gTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCAc                                                                              >  2:1789690/1‑140 (MQ=255)

                                                        gTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCAc                                                                              >  1:1829586/1‑140 (MQ=255)

                                                        gTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCAc                                                                              >  1:2073785/1‑140 (MQ=255)

                                                           ccGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGaa                                                                           <  1:2068126/140‑1 (MQ=255)

                                                           ccGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGaa                                                                           <  1:1394856/140‑1 (MQ=255)

                                                           ccGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGaa                                                                           >  2:1079308/1‑140 (MQ=255)

                                                              aGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACgg                                                                        >  1:1573232/1‑140 (MQ=255)

                                                              aGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACgg                                                                        >  1:291210/1‑140 (MQ=255)

                                                                cAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCg                                                                      <  2:290706/140‑1 (MQ=255)

                                                                cAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCg                                                                      <  1:586515/140‑1 (MQ=255)

                                                                  aTACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCgtg                                                                    >  1:795750/1‑140 (MQ=255)

                                                                   tACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCgtgg                                                                   <  2:461860/140‑1 (MQ=255)

                                                                   tACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCgtgg                                                                   <  1:1708297/140‑1 (MQ=255)

                                                                   tACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCgtgg                                                                   <  2:1841489/140‑1 (MQ=255)

                                                                   tACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCgtgg                                                                   <  1:653740/140‑1 (MQ=255)

                                                                   tACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCgtgg                                                                   >  1:111933/1‑140 (MQ=255)

                                                                   tACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCgtgg                                                                   <  1:1021856/140‑1 (MQ=255)

                                                                        ccGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCg                                                              >  1:837845/1‑140 (MQ=255)

                                                                          ggTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTa                                                            <  2:1787484/140‑1 (MQ=255)

                                                                             aCGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATgg                                                         >  2:518196/1‑140 (MQ=255)

                                                                             aCGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATgg                                                         >  1:513085/1‑140 (MQ=255)

                                                                             aCGGCAATGGTCGGAATCAACGTCGCGCGGAAGCTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATgg                                                         >  2:1243770/1‑140 (MQ=255)

                                                                              cGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATggg                                                        >  1:2759/1‑140 (MQ=255)

                                                                               ggCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGt                                                       <  2:1385634/140‑1 (MQ=255)

                                                                                   aTGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAAc                                                   >  1:1498912/1‑140 (MQ=255)

                                                                                     ggTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACaa                                                 >  1:1198987/1‑140 (MQ=255)

                                                                                                 cGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCg                                     <  1:313614/140‑1 (MQ=255)

                                                                                                   tCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGAc                                   <  1:2149411/140‑1 (MQ=255)

                                                                                                    cgcgcgGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACg                                  >  2:1006390/1‑140 (MQ=255)

                                                                                                     gcgcgGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACgg                                 >  2:1111384/1‑140 (MQ=255)

                                                                                                     gcgcgGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACgg                                 >  1:841264/1‑140 (MQ=255)

                                                                                                      cgcgGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACggg                                >  2:1565409/1‑140 (MQ=255)

                                                                                                      cgcgGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACggg                                <  1:1006390/140‑1 (MQ=255)

                                                                                                      cgcgGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACggg                                >  1:895709/1‑140 (MQ=255)

                                                                                                      cgcgGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGAGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACggg                                <  2:1498912/140‑1 (MQ=255)

                                                                                                       gcgGAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGga                               >  2:630603/1‑140 (MQ=255)

                                                                                                         ggAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGgaag                             <  2:1515156/140‑1 (MQ=255)

                                                                                                          gAAGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGgaaga                            <  1:992350/140‑1 (MQ=255)

                                                                                                           aaGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGgaagaa                           <  1:1243770/140‑1 (MQ=255)

                                                                                                           aaGTTCTGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGgaagaa                           <  1:1523606/140‑1 (MQ=255)

                                                                                                                atGCAGGAACAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGtt                      <  2:837845/139‑1 (MQ=255)

                                                                                                                        aCAGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTc              >  1:289444/1‑140 (MQ=255)

                                                                                                                          aGATACATAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTCGc            <  2:513085/140‑1 (MQ=255)

                                                                                                                                 tAACCAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTCGCCAGTTCa     <  1:1565409/140‑1 (MQ=255)

                                                                                                                                    ccAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTCGCCAGTTCAGCa  >  2:525305/1‑140 (MQ=255)

                                                                                                                                    ccAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTCGCCAGTTCAGCa  >  2:328933/1‑140 (MQ=255)

                                                                                                                                    ccAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTCGCCAGTTCAGCa  >  2:259495/1‑140 (MQ=255)

                                                                                                                                    ccAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTCGCCAGTTCAGCa  >  1:981686/1‑140 (MQ=255)

                                                                                                                                    ccAGTAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTCGCCAGTTCAGCa  >  2:784383/1‑140 (MQ=255)

TCCCGAACATTGTTAGCGTGTTTATCGAGAAGCCAAAGGCGGCAAGGACGGCAAAGGTCCCGAGCAATACCACCGGTACGGCAATGGTCGGAATCAACGTCGCGCGGAAGTTCTGCAGGAACAGATACATAACCAGGAACACGAGGATGATCGCTTCGACCAGCGTTTTAACCACTTCGTGAATAGAGATTTTCACGAACGGCGTGGTGTCGTATGGGTAAACAATTTTCAGACCCGACGGGAAGAACGGTTCCATCTTCGCCAGTTCAGCA  >  NC_000913/483212‑483483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A