Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	512,156	C→A	A172A (GCC→GCA)	glsA →	glutaminase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	512,156	0	C	A	100.0%	339.9 / NA	99	A172A (GCC→GCA)	glsA	glutaminase 1
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (39/60); total (39/60)

ATTAACGCTGAAAATGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCCTGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTGGCGGCAGGTGGT  >  NC_000913/512019‑512288

aTTAACGCTGAAAATGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATg                                                                                                                                    >  2:1013749/1‑140 (MQ=255)

aTTAACGCTGAAAATGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATg                                                                                                                                    >  2:1463931/1‑140 (MQ=255)

    aCGCTGAAAATGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGgctg                                                                                                                                <  1:209487/140‑1 (MQ=255)

     cGCTG‑AAATGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGgctgct                                                                                                                              >  1:742484/1‑140 (MQ=255)

          aaaaTGTTGAACAACGCTGGCCGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTAc                                                                                                                          >  2:1587153/1‑140 (MQ=255)

          aaaaTGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGTTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTAc                                                                                                                          >  2:1547184/1‑140 (MQ=255)

          aaaaTGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTAc                                                                                                                          >  1:188759/1‑140 (MQ=255)

             aTGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTcc                                                                                                                       <  2:248594/140‑1 (MQ=255)

              tGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTccg                                                                                                                      <  1:825444/140‑1 (MQ=255)

               gTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATACCCGGGCCATAGCATGGCTGCTGTACTccgc                                                                                                                     <  1:1537580/140‑1 (MQ=255)

                 tGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTccgccg                                                                                                                   >  1:978853/1‑140 (MQ=255)

                 tGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTccgccg                                                                                                                   <  1:2041671/140‑1 (MQ=255)

                 tGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTccgccg                                                                                                                   <  2:742484/140‑1 (MQ=255)

                 tGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTccgccg                                                                                                                   <  1:653857/140‑1 (MQ=255)

                   aacaacGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGa                                                                                                                 <  2:2085881/140‑1 (MQ=255)

                   aacaacGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGa                                                                                                                 <  1:1200124/140‑1 (MQ=255)

                   aacaacGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGa                                                                                                                 >  1:1170979/1‑140 (MQ=255)

                   aacaaaGCTGGCAGCGAATTTTACATATCCAACAACAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAGCCAGTCGGAACAAACAACCAACTTCCATAACCGAGCCATAGCATGGCTGCTGTACTCCGCCGGa                                                                                                                 <  2:19664/140‑1 (MQ=255)

                    acaacGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGat                                                                                                                >  1:567738/1‑140 (MQ=255)

                    acaacGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGat                                                                                                                <  2:655340/140‑1 (MQ=255)

                      aacGCTGGCAGCGAATTTTACATTTCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGatat                                                                                                              <  1:173241/140‑1 (MQ=255)

                      aacGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGatat                                                                                                              <  1:1436401/140‑1 (MQ=255)

                      aacGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTACCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGatat                                                                                                              <  2:1695366/140‑1 (MQ=255)

                        cGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATAtct                                                                                                            >  1:791932/1‑140 (MQ=255)

                        cGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATAtct                                                                                                            >  1:613041/1‑140 (MQ=255)

                          cTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATctct                                                                                                          <  1:238041/140‑1 (MQ=255)

                           tGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTa                                                                                                         <  2:978853/140‑1 (MQ=255)

                             gCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTAtt                                                                                                       >  2:1373389/1‑140 (MQ=255)

                             gCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTAtt                                                                                                       >  2:846982/1‑140 (MQ=255)

                              cAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATtg                                                                                                      <  1:2131143/140‑1 (MQ=255)

                              cAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCACCGGATATCTCTATtg                                                                                                      <  1:116245/140‑1 (MQ=255)

                              cAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCAAAACCTTGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATtg                                                                                                      <  1:1587153/140‑1 (MQ=255)

                                 cGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGa                                                                                                   <  2:791932/140‑1 (MQ=255)

                                   aaTTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATg                                                                                                 <  2:1057275/140‑1 (MQ=255)

                                     ttttACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCa                                                                                               <  1:453163/140‑1 (MQ=255)

                                        tACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATg                                                                                            <  2:1170979/140‑1 (MQ=255)

                                             atCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGc                                                                                       >  1:1857587/1‑140 (MQ=255)

                                             atCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGc                                                                                       >  2:2065381/1‑140 (MQ=255)

                                              tCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGcc                                                                                      >  1:1355856/1‑140 (MQ=255)

                                              tCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGcc                                                                                      >  1:360181/1‑140 (MQ=255)

                                               ccAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCt                                                                                     >  2:1411062/1‑140 (MQ=255)

                                                  aCAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCtgtg                                                                                  <  2:301381/140‑1 (MQ=255)

                                                  aCAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCtgtg                                                                                  <  2:1159762/140‑1 (MQ=255)

                                                  aCAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCtgtg                                                                                  <  1:1463931/140‑1 (MQ=255)

                                                  aCAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCtgtg                                                                                  <  1:936124/140‑1 (MQ=255)

                                                  aCAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCtgtg                                                                                  <  2:567738/140‑1 (MQ=255)

                                                  aCAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCtgtg                                                                                  <  1:657646/140‑1 (MQ=255)

                                                    aGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGAc                                                                                <  2:1414710/140‑1 (MQ=255)

                                                      cAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACgt                                                                              >  1:387758/1‑140 (MQ=255)

                                                        aCTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACgtgt                                                                            >  2:149306/1‑140 (MQ=255)

                                                         ctggctggCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGta                                                                           >  2:29750/1‑140 (MQ=255)

                                                         ctggctggCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGta                                                                           >  1:408066/1‑140 (MQ=255)

                                                         ccggctggcGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGta                                                                           >  1:712936/3‑140 (MQ=255)

                                                            gctggcGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATAc                                                                        >  2:1551991/1‑140 (MQ=255)

                                                             ctggcGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATAcc                                                                       <  2:360181/140‑1 (MQ=255)

                                                             ctggcGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATAcc                                                                       <  2:1355856/140‑1 (MQ=255)

                                                             atggcGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATAcc                                                                       <  2:408066/139‑1 (MQ=255)

                                                              tggcGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATAccc                                                                      >  1:1096251/1‑140 (MQ=255)

                                                                 cGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTc                                                                   >  1:1887251/1‑140 (MQ=255)

                                                                  gAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCa                                                                  <  1:29750/140‑1 (MQ=255)

                                                                          aGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCa                                                          <  2:1096251/140‑1 (MQ=255)

                                                                            cgcTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCTGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACg                                                        <  1:1958447/140‑1 (MQ=255)

                                                                            cgcTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACg                                                        <  2:1857587/140‑1 (MQ=255)

                                                                            cgcTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACg                                                        <  1:1652155/140‑1 (MQ=255)

                                                                            cgcTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACg                                                        <  1:1981674/140‑1 (MQ=255)

                                                                            cgcTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACg                                                        <  1:2065381/140‑1 (MQ=255)

                                                                            cgcTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACg                                                        <  1:379594/140‑1 (MQ=255)

                                                                              ctctctGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGct                                                      >  1:999210/1‑140 (MQ=255)

                                                                               tctctGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGctc                                                     <  2:814735/140‑1 (MQ=255)

                                                                               tctctGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGctc                                                     <  2:2041932/140‑1 (MQ=255)

                                                                               tctctGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGctc                                                     <  2:387758/140‑1 (MQ=255)

                                                                               tctctGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGctc                                                     >  2:24959/1‑140 (MQ=255)

                                                                                 tctGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGctcct                                                   <  2:1560185/140‑1 (MQ=255)

                                                                                 tctGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGctcct                                                   <  1:1551991/140‑1 (MQ=255)

                                                                                 tctGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGctcct                                                   <  1:1013749/140‑1 (MQ=255)

                                                                                 tccgACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGctcct                                                   <  2:1403899/137‑1 (MQ=255)

                                                                                  ctGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGctcctc                                                  >  1:1764653/1‑140 (MQ=255)

                                                                                    gACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCaa                                                <  2:999210/140‑1 (MQ=255)

                                                                                    gACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCaa                                                <  2:613041/140‑1 (MQ=255)

                                                                                    gACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCaa                                                <  1:846982/140‑1 (MQ=255)

                                                                                         aGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGTGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTa                                           >  2:422241/1‑140 (MQ=255)

                                                                                             aaCCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGa                                       >  1:299147/1‑140 (MQ=255)

                                                                                                   tCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGc                                 <  1:1411062/140‑1 (MQ=255)

                                                                                                   tCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGc                                 <  2:1887251/140‑1 (MQ=255)

                                                                                                     ggAACAAACAACCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCaa                               >  1:994479/1‑140 (MQ=255)

                                                                                                         caaacaaCCAACTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCt                           <  1:455372/140‑1 (MQ=255)

                                                                                                             caaccaacTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGgc                       >  2:1200957/1‑140 (MQ=255)

                                                                                                                   acTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACg                 <  1:134184/140‑1 (MQ=255)

                                                                                                                    cTTCCATAACCGGGCCATAGCATGGCTGCTGTGCTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGc                >  1:492198/1‑140 (MQ=255)

                                                                                                                    cTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACg                 >  1:684244/1‑139 (MQ=255)

                                                                                                                    cTTCCATAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACg                 <  2:684244/139‑1 (MQ=255)

                                                                                                                      tCCATAACCGGGCCATAGCATGGCTGCTGTGCTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTg              <  2:492198/140‑1 (MQ=255)

                                                                                                                          tAACCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTggcgg          <  1:422241/140‑1 (MQ=255)

                                                                                                                            aCCGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTGGCGGCa        >  2:1804851/1‑140 (MQ=255)

                                                                                                                             ccGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTGGCGGCAg       <  1:1200957/140‑1 (MQ=255)

                                                                                                                              cGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTGGCGGCAgg      >  2:1403648/1‑140 (MQ=255)

                                                                                                                              cGGGCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTGGCGGCAgg      >  2:970480/1‑140 (MQ=255)

                                                                                                                                ggCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTGGCGGCAggtg    >  2:918264/1‑140 (MQ=255)

                                                                                                                                 gCCATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTGGCGGCAggtgg   >  2:906165/1‑140 (MQ=255)

                                                                                                                                  ccATAGCATGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTGGCGGCAggtggt  <  2:1855891/140‑1 (MQ=255)

ATTAACGCTGAAAATGTTGAACAACGCTGGCAGCGAATTTTACATATCCAACAGCAACTGGCTGGCGAGCAGGTAGCGCTCTCTGACGAAGTCAACCAGTCGGAACAAACAACCAACTTCCATAACCGGGCCATAGCCTGGCTGCTGTACTCCGCCGGATATCTCTATTGTGATGCAATGGAAGCCTGTGACGTGTATACCCGTCAGTGCTCCACGCTCCTCAATACTATTGAACTGGCAACGCTTGGCGCGACGCTGGCGGCAGGTGGT  >  NC_000913/512019‑512288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A