Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 586,374 G→T L179I (CTC→ATC)  envY ← DNA‑binding transcriptional activator EnvY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913586,3740GT100.0% 524.0 / NA 150L179I (CTC→ATC) envYDNA‑binding transcriptional activator EnvY
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (75/75);  total (75/75)

Only 100 of 151 total aligned reads displayed.

CTGCTATAGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGAGCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACATCAGTAGGGCAA  >  NC_000913/586238‑586502
                                                                                                                                        |                                                                                                                                
 tgctATAGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAgg                                                                                                                              >  1:661167/1‑140 (MQ=255)
   ctATAGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCt                                                                                                                            <  1:1612104/140‑1 (MQ=255)
   ctATAGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCt                                                                                                                            <  1:1295981/140‑1 (MQ=255)
   ctATAGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGGATTTTCGTTTTTTAATTTCTTTTTGATCAGGCt                                                                                                                            <  2:2122080/140‑1 (MQ=255)
   atataGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCt                                                                                                                            <  2:1680287/139‑1 (MQ=255)
   atataGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCt                                                                                                                            <  2:808819/139‑1 (MQ=255)
    tataGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTg                                                                                                                           <  2:661167/140‑1 (MQ=255)
     ataGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTgg                                                                                                                          <  2:2085684/140‑1 (MQ=255)
       aGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTgggg                                                                                                                        >  2:939838/1‑140 (MQ=255)
        gCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCt                                                                                                                            <  1:1101361/135‑1 (MQ=255)
          cacaTAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCtt                                                                                                                     >  1:1751653/1‑140 (MQ=255)
           acaTAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTa                                                                                                                    >  2:1377287/1‑140 (MQ=255)
             aTAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTaaa                                                                                                                  >  1:2052934/1‑140 (MQ=255)
             aTAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTaaa                                                                                                                  >  2:1358098/1‑140 (MQ=255)
             aTAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGACTGGGGCTTaaa                                                                                                                  >  2:1161654/1‑140 (MQ=255)
             aTAATTGCACCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTaaa                                                                                                                  >  2:1506256/1‑140 (MQ=255)
                 ttGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATa                                                                                                              >  1:928386/1‑140 (MQ=255)
                   gcgcCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGc                                                                                                            >  1:1055588/1‑140 (MQ=255)
                    cgcCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCg                                                                                                           >  2:2064321/1‑140 (MQ=255)
                      ccACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGaa                                                                                                         >  1:1210380/1‑140 (MQ=255)
                                   atTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTc                                                                                            >  1:41904/1‑140 (MQ=255)
                                      tttGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCa                                                                                         <  1:5065/140‑1 (MQ=255)
                                      tttGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCa                                                                                         <  2:1659863/140‑1 (MQ=255)
                                      tttGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGACTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCa                                                                                         <  1:1161654/140‑1 (MQ=255)
                                         gTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGAt                                                                                      <  2:1872482/140‑1 (MQ=255)
                                            aTCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTcc                                                                                   >  1:1610506/1‑140 (MQ=255)
                                            aTCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTcc                                                                                   >  1:930390/1‑140 (MQ=255)
                                              ccATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAg                                                                                 <  2:41904/140‑1 (MQ=255)
                                                aTCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTa                                                                               <  2:1210380/140‑1 (MQ=255)
                                                     tAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCt                                                                          <  2:1938717/140‑1 (MQ=255)
                                                       aCATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGa                                                                        >  1:1000580/1‑140 (MQ=255)
                                                        cATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATCCCAGTAATGCTGaa                                                                       >  1:1408431/1‑140 (MQ=255)
                                                         aTCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAat                                                                      >  2:111356/1‑140 (MQ=255)
                                                          tCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAata                                                                     >  2:1530457/1‑140 (MQ=255)
                                                          tCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAata                                                                     <  1:2064321/140‑1 (MQ=255)
                                                          tCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAata                                                                     <  2:468840/140‑1 (MQ=255)
                                                            tGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATc                                                                   >  2:1403635/1‑140 (MQ=255)
                                                                   cGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGa                                                            >  2:1651926/1‑140 (MQ=255)
                                                                   cGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGa                                                            >  1:1682509/1‑140 (MQ=255)
                                                                   cGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGa                                                            >  1:1655423/1‑140 (MQ=255)
                                                                   cGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGa                                                            >  2:2048019/1‑140 (MQ=255)
                                                                   cGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGa                                                            >  1:1403478/1‑140 (MQ=255)
                                                                   cGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGa                                                            >  2:256428/1‑140 (MQ=255)
                                                                   cGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGa                                                            >  1:1196777/1‑140 (MQ=255)
                                                                     tAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGaat                                                          >  1:1012286/1‑140 (MQ=255)
                                                                     tAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGaat                                                          >  1:690494/1‑140 (MQ=255)
                                                                       aCGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGaataa                                                        <  1:213964/140‑1 (MQ=255)
                                                                        cGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGaataat                                                       >  1:1968485/1‑140 (MQ=255)
                                                                             aCGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGc                                                  >  1:521722/1‑140 (MQ=255)
                                                                             aCGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAAATCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGc                                                  <  2:449441/140‑1 (MQ=255)
                                                                                  acTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACg                                             >  1:1054142/1‑140 (MQ=255)
                                                                                  acTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACg                                             <  2:743319/140‑1 (MQ=255)
                                                                                  acTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACg                                             <  1:367264/140‑1 (MQ=255)
                                                                                  acTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACg                                             >  2:113295/1‑140 (MQ=255)
                                                                                    tctGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCt                                           >  1:896809/1‑140 (MQ=255)
                                                                                     ctGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCtt                                          >  2:1612301/1‑139 (MQ=255)
                                                                                     ctGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTg                                          >  1:1851397/1‑140 (MQ=255)
                                                                                      tgtgACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGt                                         >  2:1165524/1‑140 (MQ=255)
                                                                                      tgtgACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGt                                         >  1:1699734/1‑140 (MQ=255)
                                                                                            aaTCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGa                                   <  2:480260/140‑1 (MQ=255)
                                                                                             aTCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGAc                                  >  2:1579753/1‑140 (MQ=255)
                                                                                              tCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACg                                 >  1:1515697/1‑140 (MQ=255)
                                                                                                 ggCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACgctg                              <  2:1124007/140‑1 (MQ=255)
                                                                                                  gCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACgctgc                             >  1:2001373/1‑140 (MQ=255)
                                                                                                  gCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACgctgc                             >  2:575489/1‑140 (MQ=255)
                                                                                                   cTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACgctgct                            <  2:1140852/140‑1 (MQ=255)
                                                                                                   cTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACgctgct                            <  2:1403478/140‑1 (MQ=255)
                                                                                                     ataGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCtgctgc                          <  1:88910/140‑1 (MQ=255)
                                                                                                      taGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCg                         <  2:690494/140‑1 (MQ=255)
                                                                                                       aGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGt                        <  2:928386/140‑1 (MQ=255)
                                                                                                       aGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGt                        <  1:1377287/140‑1 (MQ=255)
                                                                                                       aGCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGt                        <  1:164669/140‑1 (MQ=255)
                                                                                                        gCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTa                       <  2:2001373/140‑1 (MQ=255)
                                                                                                        gCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTa                       <  1:769318/140‑1 (MQ=255)
                                                                                                        gCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTa                       <  2:1054142/140‑1 (MQ=255)
                                                                                                        gCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTa                       <  2:730442/140‑1 (MQ=255)
                                                                                                        gCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTa                       <  1:1554764/140‑1 (MQ=255)
                                                                                                        gCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTa                       <  1:1579753/140‑1 (MQ=255)
                                                                                                        gCTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTa                       <  2:1921726/140‑1 (MQ=255)
                                                                                                        acTGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTa                       <  2:1699734/139‑1 (MQ=255)
                                                                                                          tGGTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAg                     <  1:113295/140‑1 (MQ=255)
                                                                                                           ggTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTGGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGa                    <  1:941126/140‑1 (MQ=255)
                                                                                                           ggTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGa                    <  2:521722/140‑1 (MQ=255)
                                                                                                           ggTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGa                    <  2:565257/140‑1 (MQ=255)
                                                                                                            gTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCg                         >  2:1965167/1‑134 (MQ=255)
                                                                                                            gTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCg                         <  1:1965167/134‑1 (MQ=255)
                                                                                                            gTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGat                   >  2:1204496/1‑140 (MQ=255)
                                                                                                            gTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGat                   >  2:1779039/1‑140 (MQ=255)
                                                                                                            gTATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGat                   >  1:1800367/1‑140 (MQ=255)
                                                                                                             tATTTTCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGata                  <  1:1165524/140‑1 (MQ=255)
                                                                                                                tttCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATAc               <  1:1126115/140‑1 (MQ=255)
                                                                                                                 ttCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACa              >  1:1848603/1‑140 (MQ=255)
                                                                                                                  tCGTTTTTTAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACAt             >  2:306736/1‑140 (MQ=255)
                                                                                                                     ttttttAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACATCAg          <  2:1012286/140‑1 (MQ=255)
                                                                                                                     ttttttAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACATCAg          <  1:111356/140‑1 (MQ=255)
                                                                                                                     ttttttAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACATCAg          <  2:845631/140‑1 (MQ=255)
                                                                                                                     ttttttAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACATCAg          <  2:159869/140‑1 (MQ=255)
                                                                                                                      tttttAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACATCAGt         >  1:875750/1‑140 (MQ=255)
                                                                                                                       ttttAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACATCAGTa        <  1:1506256/140‑1 (MQ=255)
                                                                                                                       ttttAATTTCTTTTTGATCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACATCAGTa        <  2:896809/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                
CTGCTATAGCCACATAATTGCGCCACCTGAGTGATATTTTTGTTATCCATCAATAACATCTGTACGGCGTAACGCATACGACACTCTGTGACAATCTGGCTATAGCTGGTATTTTCGTTTTTTAATTTCTTTTTGAGCAGGCTGGGGCTTAAACATAGCGAACTGGCGACAATTCGCAGATTCCAGTAATGCTGAATATCGCTTTGAATAATGCGGCAGACGCTGTCGCGGACGCTGCTGCGTAAGATATACATCAGTAGGGCAA  >  NC_000913/586238‑586502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A