Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 620,401 G→T A263E (GCA→GAA)  fepG ← ferric enterobactin ABC transporter membrane subunit FepG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913620,4010GT100.0% 413.5 / NA 121A263E (GCA→GAA) fepGferric enterobactin ABC transporter membrane subunit FepG
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (57/64);  total (57/64)

Only 100 of 128 total aligned reads displayed.

CGCCAACCGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTGCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTATCATCGCCCATTTC  >  NC_000913/620264‑620537
                                                                                                                                         |                                                                                                                                        
cgCCAACCGGAAGTTGATACGGTATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATgtgcggttcg                                                                                                                                        >  2:913696/1‑140 (MQ=255)
cgCCAACCGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATgtgcggttcg                                                                                                                                        >  1:1143412/1‑140 (MQ=255)
cgCCAACCGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATgtgcggttcg                                                                                                                                        >  1:1327312/1‑140 (MQ=255)
 gCCAACCGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGa                                                                                                                                       <  2:1413127/140‑1 (MQ=255)
  ccAACCGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGAc                                                                                                                                      <  2:1741890/140‑1 (MQ=255)
     aCCGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTaa                                                                                                                                   <  1:2080285/140‑1 (MQ=255)
     aCCGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTaa                                                                                                                                   <  1:25763/140‑1 (MQ=255)
     aCCGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTaa                                                                                                                                   <  1:673749/140‑1 (MQ=255)
      ccGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTaaa                                                                                                                                  >  2:767247/1‑140 (MQ=255)
       cGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAg                                                                                                                                 <  1:2143870/140‑1 (MQ=255)
         gAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCa                                                                                                                               <  2:1627600/140‑1 (MQ=255)
            gTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATa                                                                                                                            <  1:1496558/140‑1 (MQ=255)
              tGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATaaa                                                                                                                          <  1:1080619/140‑1 (MQ=255)
               gATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAg                                                                                                                         >  1:291248/1‑140 (MQ=255)
                    ggCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATaaa                                                                                                                          <  2:1628906/134‑1 (MQ=255)
                    ggCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAAt                                                                                                                    >  2:1176638/1‑140 (MQ=255)
                    ggCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAAt                                                                                                                    <  2:327982/140‑1 (MQ=255)
                      cATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCg                                                                                                                  >  2:924544/1‑140 (MQ=255)
                        tAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGc                                                                                                                <  1:1176638/140‑1 (MQ=255)
                               ttgttgGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGc                                                                                                           <  1:1177858/138‑1 (MQ=255)
                               ttgttgGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCaa                                                                                                         >  2:107801/1‑140 (MQ=255)
                                tgttgGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAg                                                                                                        >  1:207742/1‑140 (MQ=255)
                                tgttgGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAg                                                                                                        >  1:2076315/1‑140 (MQ=255)
                                tgttgGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAg                                                                                                        >  2:349430/1‑140 (MQ=255)
                                tgttgGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAg                                                                                                        >  1:1266977/1‑140 (MQ=255)
                                  ttgGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAgc                                                                                                       >  2:1919790/1‑139 (MQ=255)
                                    gggCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCt                                                                                                    >  2:810303/1‑140 (MQ=255)
                                    gggCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCt                                                                                                    >  1:272066/1‑140 (MQ=255)
                                    gggCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCt                                                                                                    >  1:31697/1‑140 (MQ=255)
                                    gggCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCt                                                                                                    >  2:399057/1‑140 (MQ=255)
                                    gggCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCt                                                                                                    >  1:126900/1‑140 (MQ=255)
                                    gggCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCCTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCt                                                                                                    >  2:1038392/1‑140 (MQ=255)
                                            agaTCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGc                                                                                            <  2:1266977/140‑1 (MQ=255)
                                             gaTCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCa                                                                                           <  1:107801/140‑1 (MQ=255)
                                             gaTCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCa                                                                                           <  1:767247/140‑1 (MQ=255)
                                             gaTCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCa                                                                                           <  2:570099/140‑1 (MQ=255)
                                              aTCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAg                                                                                          <  1:181557/140‑1 (MQ=255)
                                              aTCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAg                                                                                          <  1:674670/140‑1 (MQ=255)
                                              aTCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAg                                                                                          <  2:291248/140‑1 (MQ=255)
                                                  gccgccAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGt                                                                                      >  2:155698/1‑140 (MQ=255)
                                                     gccAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAg                                                                                   <  2:2088518/140‑1 (MQ=255)
                                                     gccAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAg                                                                                   <  2:1873000/140‑1 (MQ=255)
                                                     gccAGCAGTAACAGCGCCCCGCATAGCGCAGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAg                                                                                   <  2:207742/140‑1 (MQ=255)
                                                      ccAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGc                                                                                  >  1:1194621/1‑140 (MQ=255)
                                                        agcagTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAg                                                                                          <  2:2110179/130‑1 (MQ=255)
                                                        agcagTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAg                                                                                          >  1:2110179/1‑130 (MQ=255)
                                                        agcagTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGcac                                                                                >  1:1113261/1‑140 (MQ=255)
                                                            gTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGTGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACt                                                                            <  2:626999/140‑1 (MQ=255)
                                                             tAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTg                                                                           >  2:1588257/1‑140 (MQ=255)
                                                                 aGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAAc                                                                       <  2:1194621/140‑1 (MQ=255)
                                                                 aGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAAc                                                                       <  2:179294/140‑1 (MQ=255)
                                                                   cgcCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCa                                                                     <  2:1152876/140‑1 (MQ=255)
                                                                   cgcCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCa                                                                     <  1:916323/140‑1 (MQ=255)
                                                                   cgcCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCa                                                                     <  2:1346164/140‑1 (MQ=255)
                                                                   cgcCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCa                                                                     >  2:1865384/1‑140 (MQ=255)
                                                                   cgcCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCa                                                                     >  1:2073242/1‑140 (MQ=255)
                                                                    gcCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAg                                                                    <  1:1383890/140‑1 (MQ=255)
                                                                    gcCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAg                                                                    >  1:1895001/1‑140 (MQ=255)
                                                                    gcCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAg                                                                    >  1:479813/1‑140 (MQ=255)
                                                                     ccccGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGc                                                                   >  1:1093275/1‑140 (MQ=255)
                                                                     ccccGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGc                                                                   >  1:1012622/1‑140 (MQ=255)
                                                                      cccGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGca                                                                  <  2:485458/140‑1 (MQ=255)
                                                                      cccGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGca                                                                  <  1:1588257/140‑1 (MQ=255)
                                                                           aTAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTTTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCAtt                                                             >  2:1581408/1‑140 (MQ=255)
                                                                             aGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTaa                                                           <  2:531803/140‑1 (MQ=255)
                                                                               cgccgcCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACa                                                         >  1:366699/1‑140 (MQ=255)
                                                                                    ccTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAg                                                                    <  2:446486/124‑1 (MQ=255)
                                                                                    ccTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAg                                                                    >  1:446486/1‑124 (MQ=255)
                                                                                    ccTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGAcgc                                                    >  1:1059424/1‑140 (MQ=255)
                                                                                    ccTGGGTTAGCCCACAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAg                                                                    <  2:204388/124‑1 (MQ=255)
                                                                                         gTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACg                                               >  1:972327/1‑140 (MQ=255)
                                                                                              cccccAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGa                                          >  2:1366905/1‑140 (MQ=255)
                                                                                                cccAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACg                                        >  1:2109890/1‑140 (MQ=255)
                                                                                                  cAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTTCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAATCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCt                                      >  1:1697530/1‑140 (MQ=255)
                                                                                                  cAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGAcg                                                     >  2:1222071/1‑125 (MQ=255)
                                                                                                  cAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCt                                      >  1:742452/1‑140 (MQ=255)
                                                                                                  cAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCt                                      >  2:1131931/1‑140 (MQ=255)
                                                                                                   agcgagcgGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTg                                     >  1:2000902/1‑140 (MQ=255)
                                                                                                    gcgagcgGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGa                                    <  1:188181/140‑1 (MQ=255)
                                                                                                       agcgGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGc                                 >  2:1149499/1‑140 (MQ=255)
                                                                                                       agcgGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGc                                 >  1:1682347/1‑140 (MQ=255)
                                                                                                        gcgGTGCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGcc                                >  2:1031641/1‑140 (MQ=255)
                                                                                                             gCCGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAgcg                           <  2:366699/140‑1 (MQ=255)
                                                                                                              ccGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAgcgc                          >  1:1448904/1‑140 (MQ=255)
                                                                                                               cGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGca                         <  1:883468/140‑1 (MQ=255)
                                                                                                               cGCTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGca                         <  2:2109890/140‑1 (MQ=255)
                                                                                                                 cTAATGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGcaca                       <  2:1364414/140‑1 (MQ=255)
                                                                                                                   aaTGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACAcg                     <  2:272066/140‑1 (MQ=255)
                                                                                                                   aaTGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACAcg                     <  1:1865384/140‑1 (MQ=255)
                                                                                                                     tGCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACAcgcg                   <  2:2073242/140‑1 (MQ=255)
                                                                                                                      gCGTCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCgg                  >  1:1983504/1‑140 (MQ=255)
                                                                                                                         tCGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTat               >  1:200675/1‑140 (MQ=255)
                                                                                                                          cGGGCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTatc              >  1:1959004/1‑140 (MQ=255)
                                                                                                                            ggCAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTatcat            >  2:507823/1‑140 (MQ=255)
                                                                                                                              cAATGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTATCATCg          <  1:1131931/140‑1 (MQ=255)
                                                                                                                               aaTGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTATCATCGc         <  2:972327/140‑1 (MQ=255)
                                                                                                                                aTGTGCGGTTCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTATCATCGcc        <  2:200675/140‑1 (MQ=255)
                                                                                                                                   tgcggttcgACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTATCATCGCCCAt     >  2:1025258/1‑140 (MQ=255)
                                                                                                                                   tgcggttcgACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTATCATCGCCCAt     >  1:1756270/1‑140 (MQ=255)
                                                                                                                                      ggttcgACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTATCATCGCCCATTTc  >  2:1876445/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CGCCAACCGGAAGTTGATACGGCATAAACAGTTGTTGGGCGCAGAGATCGGCCGCCAGCAGTAACAGCGCCCCGCATAGCGCCGCCTGGGTTAGCCCCCAGCGAGCGGTGCCGCTAATGCGTCGGGCAATGTGCGGTGCGACTAAAGCAATAAAGGAAATCGGCCCGGCAAGCGCTGTTGCCGCAGCGGTAAGCACCACTGCAACCAGCATCATTAACAGACGCGAACGTTCGACGCTGACGCCCAGCGCACACGCGGTATCATCGCCCATTTC  >  NC_000913/620264‑620537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A