Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	633,676	C→A	Q31K (CAG→AAG)	ybdL →	methionine‑oxo‑acid transaminase, PLP‑dependent

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	633,676	0	C	A	100.0%	485.8 / NA	139	Q31K (CAG→AAG)	ybdL	methionine‑oxo‑acid transaminase, PLP‑dependent
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (74/65); total (74/65)

Only 100 of 143 total aligned reads displayed.

GTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACCAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCGTGCAGGCCTTGCGCGAGGCGA  >  NC_000913/633541‑633811

gtgtTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGc                                                                                                                                     >  2:1192966/1‑140 (MQ=255)

gtgtTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGc                                                                                                                                     >  1:1353932/1‑140 (MQ=255)

 tgtTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCg                                                                                                                                    >  1:881089/1‑140 (MQ=255)

 tgtTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCg                                                                                                                                    >  1:1985784/1‑140 (MQ=255)

 tgtTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCg                                                                                                                                    >  2:812064/1‑140 (MQ=255)

 tgtTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCg                                                                                                                                    >  2:1778096/1‑140 (MQ=255)

 tgtTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCg                                                                                                                                    >  1:1557089/1‑140 (MQ=255)

 tgtTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCg                                                                                                                                    >  1:817825/1‑140 (MQ=255)

   ttATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGAt                                                                                                                                  >  2:1917300/1‑140 (MQ=255)

      taGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCTCGCTGGCGCAGCAACACAAGGCGATTaa                                                                                                                               >  1:827407/1‑140 (MQ=255)

        gTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAAcc                                                                                                                             <  1:2077355/140‑1 (MQ=255)

         tGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCt                                                                                                                            >  1:143249/1‑140 (MQ=255)

         tGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCt                                                                                                                            >  2:756006/1‑140 (MQ=255)

           ccTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGt                                                                                                                          >  1:1391468/1‑140 (MQ=255)

           ccTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGt                                                                                                                          >  1:225802/1‑140 (MQ=255)

           ccTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGt                                                                                                                          >  1:338952/1‑140 (MQ=255)

           ccTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGt                                                                                                                          >  2:719189/1‑140 (MQ=255)

           ccTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGt                                                                                                                          >  1:1503244/1‑140 (MQ=255)

           ccTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGt                                                                                                                          >  1:1289667/1‑140 (MQ=255)

             ttCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCg                                                                                                                        >  2:1838204/1‑140 (MQ=255)

             ttCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCg                                                                                                                        >  1:1279745/1‑140 (MQ=255)

             ttCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCg                                                                                                                        >  2:290256/1‑140 (MQ=255)

               cAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCa                                                                                                                      <  2:1542042/140‑1 (MQ=255)

                     gCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCtt                                                                                                                >  2:821762/1‑140 (MQ=255)

                       aaCTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTc                                                                                                              <  1:1001988/140‑1 (MQ=255)

                          ttCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTg                                                                                                           >  1:1571669/1‑140 (MQ=255)

                           tCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGa                                                                                                          <  1:2042321/140‑1 (MQ=255)

                                   tACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATg                                                                                                  >  1:977563/1‑140 (MQ=255)

                                   tACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATg                                                                                                  >  1:2003792/1‑140 (MQ=255)

                                     cAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGt                                                                                                <  1:572971/140‑1 (MQ=255)

                                     cAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGt                                                                                                >  2:1287639/1‑140 (MQ=255)

                                       aTAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTcc                                                                                              <  2:798599/140‑1 (MQ=255)

                                        tAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTGcg                                                                                             <  2:2130571/140‑1 (MQ=255)

                                        tAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcg                                                                                             <  2:1279745/140‑1 (MQ=255)

                                          aaaaTGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcgcg                                                                                           <  2:270629/140‑1 (MQ=255)

                                          aaaaTGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcgcg                                                                                           <  2:603103/140‑1 (MQ=255)

                                          aaaaTGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcgcg                                                                                           <  2:1985784/140‑1 (MQ=255)

                                          aaaaTGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcgcg                                                                                           <  2:96693/140‑1 (MQ=255)

                                          aaaaTGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcgcg                                                                                           <  2:1353932/140‑1 (MQ=255)

                                          aaaaTGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcgcg                                                                                           <  1:1158303/140‑1 (MQ=255)

                                          aaaaTGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcgcg                                                                                           <  2:1069943/140‑1 (MQ=255)

                                            aaTGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCt                                                                                         <  2:391497/140‑1 (MQ=255)

                                                aCAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTAttt                                                                                     >  1:1469402/1‑140 (MQ=255)

                                                 cAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTa                                                                                    >  1:1783796/1‑140 (MQ=255)

                                                    aTAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTAttt                                                                                     <  1:1213677/136‑1 (MQ=255)

                                                        cccTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcgcg                                                                                           <  1:991493/126‑1 (MQ=255)

                                                        cccTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCcgcg                                                                                           >  2:991493/1‑126 (MQ=255)

                                                        cccTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGc                                                                             >  1:1620267/1‑140 (MQ=255)

                                                           tctGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGc                                                                          <  2:1571669/140‑1 (MQ=255)

                                                            ctGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCt                                                                         >  2:843726/1‑140 (MQ=255)

                                                             tGATTCCACAAAGCAAACTTCCACAACTTGGCACCGCTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTCCAGGAGCGGCTg                                                                        <  2:1580628/140‑1 (MQ=255)

                                                             tGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTg                                                                        >  2:859469/1‑140 (MQ=255)

                                                             tGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTg                                                                        >  1:1665065/1‑140 (MQ=255)

                                                             tGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTg                                                                        <  1:1758262/140‑1 (MQ=255)

                                                               aTTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGgc                                                                      >  2:918462/1‑140 (MQ=255)

                                                                  ccACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGca                                                                   <  2:2148523/140‑1 (MQ=255)

                                                                  ccACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGca                                                                   <  2:1035140/140‑1 (MQ=255)

                                                                  ccACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGca                                                                   <  2:1557089/140‑1 (MQ=255)

                                                                  ccACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGca                                                                   <  2:665038/140‑1 (MQ=255)

                                                                  ccACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGca                                                                   <  1:1838204/140‑1 (MQ=255)

                                                                  ccACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGca                                                                   <  2:1511222/140‑1 (MQ=255)

                                                                   cacaAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGcac                                                                  >  1:100734/1‑140 (MQ=255)

                                                                    acaAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGcacc                                                                 <  1:255913/140‑1 (MQ=255)

                                                                     caAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGcacca                                                                >  1:1755308/1‑140 (MQ=255)

                                                                     caAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGcacca                                                                <  1:1593207/140‑1 (MQ=255)

                                                                        aGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGt                                                             >  2:472854/1‑140 (MQ=255)

                                                                             aCTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGcac                                                        <  2:977563/140‑1 (MQ=255)

                                                                             aCTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGcac                                                        <  1:855323/140‑1 (MQ=255)

                                                                             aCTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGcac                                                        >  2:1659464/1‑140 (MQ=255)

                                                                             aCTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCACGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGcac                                                        <  2:385532/140‑1 (MQ=255)

                                                                                  cacaACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAgggg                                                   >  1:791349/1‑140 (MQ=255)

                                                                                         tGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAAcc                                            >  1:309607/1‑140 (MQ=255)

                                                                                          ggCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCa                                           >  1:860371/1‑140 (MQ=255)

                                                                                               cacTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCaa                                               <  1:757032/131‑1 (MQ=255)

                                                                                               cacTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCaa                                               >  2:757032/1‑131 (MQ=255)

                                                                                               cacTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATAcg                                      <  2:143249/140‑1 (MQ=255)

                                                                                               cacTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATAcg                                      <  1:1072223/140‑1 (MQ=255)

                                                                                               cacTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATAcg                                      <  1:812064/140‑1 (MQ=255)

                                                                                                 cTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATAcgcg                                    <  2:309607/140‑1 (MQ=255)

                                                                                                 cTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATAcgcg                                    >  1:685210/1‑140 (MQ=255)

                                                                                                 cTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATAcgcg                                    >  2:2078885/1‑140 (MQ=255)

                                                                                                          cccAGATGAGCGCGCTGGCGCAGCGACGCAAGGCGATTAACCTGTCGCAATGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCAACACGTTGCACAGGGGGCAAACCAATACGCGCCCATGAcc                           <  2:827407/140‑1 (MQ=255)

                                                                                                          cccAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGAcc                           <  1:614486/140‑1 (MQ=255)

                                                                                                           ccAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCTCCACGTTGCACAGTGGGCAAACCAATACGCGCCCATGACCg                          <  1:312423/140‑1 (MQ=255)

                                                                                                           ccAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGTGGCAAACCAATACGCGCCCATGACCg                          <  2:1503244/140‑1 (MQ=255)

                                                                                                           ccAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCg                          <  2:225802/140‑1 (MQ=255)

                                                                                                           ccAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCg                          <  1:2078885/140‑1 (MQ=255)

                                                                                                           ccAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCg                          <  1:472854/140‑1 (MQ=255)

                                                                                                           ccAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCg                          >  2:719536/1‑140 (MQ=255)

                                                                                                           ccAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCg                          <  1:719536/140‑1 (MQ=255)

                                                                                                           ccAGATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCg                          <  1:772998/140‑1 (MQ=255)

                                                                                                              gATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCg                       >  1:59658/1‑140 (MQ=255)

                                                                                                              gATGAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCAGGCGCCCCACGTTGCACAGGGGGCAAACCAATTCGCGCCCTTGCCCgcgg                       >  2:1441296/1‑137 (MQ=255)

                                                                                                                agAGCGCGCTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCGTg                     <  2:860371/139‑1 (MQ=255)

                                                                                                                    cgcgcTGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCGTGCAgg                 >  1:638475/1‑140 (MQ=255)

                                                                                                                         tGGCGCAGCAACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCGTGCAGGCCTTg            >  1:396578/1‑140 (MQ=255)

                                                                                                                                 caACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCGTGCAGGCCTTGCGCGAGGc    >  2:111854/1‑140 (MQ=255)

                                                                                                                                 caACACAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCGTGCAGGCCTTGCGCGAGGc    >  2:1993425/1‑140 (MQ=255)

                                                                                                                                   acacAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCGTGCAGGCCTTGCGCGAGGCGa  <  1:750054/140‑1 (MQ=255)

                                                                                                                                   acacAAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCGTGCAGGCCTTGCGCGAGGCGa  <  1:918462/140‑1 (MQ=255)

GTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCAACACCAGGCGATTAACCTGTCGCAAGGCTTTCCTGATTTTGATGGTCCGCGCTATTTACAGGAGCGGCTGGCGCACCACGTTGCACAGGGGGCAAACCAATACGCGCCCATGACCGGCGTGCAGGCCTTGCGCGAGGCGA  >  NC_000913/633541‑633811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A