Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 683,821 G→T H198N (CAC→AAC)  rihA ← pyrimidine‑specific ribonucleoside hydrolase RihA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913683,8210GT100.0% 392.1 / NA 113H198N (CAC→AAC) rihApyrimidine‑specific ribonucleoside hydrolase RihA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (49/64);  total (49/64)

Only 100 of 113 total aligned reads displayed.

CATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGCCCCATAGCG  >  NC_000913/683685‑683957
                                                                                                                                        |                                                                                                                                        
 aTGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGAtt                                                                                                                                      <  1:1944791/140‑1 (MQ=255)
 aTGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGAtt                                                                                                                                      <  1:833606/140‑1 (MQ=255)
   gggTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTtg                                                                                                                                    <  2:281705/140‑1 (MQ=255)
    ggTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTtgt                                                                                                                                   <  2:916889/140‑1 (MQ=255)
    ggTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTtgt                                                                                                                                   <  2:1633936/140‑1 (MQ=255)
    ggTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTtgt                                                                                                                                   <  1:1349757/140‑1 (MQ=255)
    ggTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTtgt                                                                                                                                   <  2:34849/140‑1 (MQ=255)
     gTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTtgtg                                                                                                                                  >  1:589715/1‑140 (MQ=255)
     gTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTtgtg                                                                                                                                  <  1:1681018/140‑1 (MQ=255)
       aaTGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCt                                                                                                                                <  2:29315/139‑1 (MQ=255)
        aTGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGAtt                                                                                                                                      <  2:1700342/133‑1 (MQ=255)
        aTGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGAtt                                                                                                                                      >  1:1700342/1‑133 (MQ=255)
        aTGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCtt                                                                                                                               >  1:694533/1‑140 (MQ=255)
        aTGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCtt                                                                                                                               >  2:755033/1‑140 (MQ=255)
        aTGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCtt                                                                                                                               >  2:1882342/1‑140 (MQ=255)
        aTGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCtt                                                                                                                               >  2:1208622/1‑140 (MQ=255)
           cAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTAt                                                                                                                            <  2:302840/140‑1 (MQ=255)
           cAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTAt                                                                                                                            <  1:369545/140‑1 (MQ=255)
               ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGt                                                                                                                        <  1:1546972/140‑1 (MQ=255)
               ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGt                                                                                                                        >  2:70190/1‑140 (MQ=255)
               ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGt                                                                                                                        <  1:972122/140‑1 (MQ=255)
               ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGt                                                                                                                        <  2:383877/140‑1 (MQ=255)
                gtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTa                                                                                                                       >  1:1589994/1‑140 (MQ=255)
                gtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTa                                                                                                                       >  1:2118487/1‑140 (MQ=255)
                gtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTa                                                                                                                       >  1:1332077/1‑140 (MQ=255)
                gtgCGCCGACAAACCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTa                                                                                                                       >  1:606119/1‑140 (MQ=255)
                   cgcCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAAct                                                                                                                    >  2:1658348/1‑139 (MQ=255)
                   cgcCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACa                                                                                                                    >  1:1442380/1‑140 (MQ=255)
                     ccGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATc                                                                                                                  <  1:755033/140‑1 (MQ=255)
                        aCAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAg                                                                                                               >  2:501759/1‑140 (MQ=255)
                         aaaaGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGa                                                                                                              <  2:1442380/139‑1 (MQ=255)
                          aaaGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGAc                                                                                                             <  2:1517491/140‑1 (MQ=255)
                          aaaGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGAc                                                                                                             <  1:950011/140‑1 (MQ=255)
                          aaaGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGAc                                                                                                             <  1:1283806/140‑1 (MQ=255)
                          aaaCCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGAc                                                                                                             <  2:606119/140‑1 (MQ=255)
                              ccccATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGc                                                                                                         <  1:925464/140‑1 (MQ=255)
                                 cATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCAt                                                                                                      <  2:1915846/140‑1 (MQ=255)
                                 cATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCAt                                                                                                      <  1:939379/140‑1 (MQ=255)
                                 aaTTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCAt                                                                                                      <  2:110805/139‑1 (MQ=255)
                                  aTTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGTTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATc                                                                                                     >  2:1112671/1‑140 (MQ=255)
                                  aTTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATc                                                                                                     >  1:1809953/1‑140 (MQ=255)
                                  aTTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATc                                                                                                     >  1:889688/1‑140 (MQ=255)
                                   tttttCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCAt                                                                                                      >  1:1578189/1‑138 (MQ=255)
                                   tttttCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCAt                                                                                                      <  2:1578189/138‑1 (MQ=255)
                                     tttCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATcacc                                                                                                  <  1:1932257/140‑1 (MQ=255)
                                      ttCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATcacca                                                                                                 <  1:1489552/140‑1 (MQ=255)
                                         gTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCg                                                                                              <  2:410874/140‑1 (MQ=255)
                                               aTGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATcc                                                                                        <  2:1402462/140‑1 (MQ=255)
                                                 gATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCt                                                                                      <  1:1098344/140‑1 (MQ=255)
                                                      tCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTg                                                                                 >  1:703877/1‑140 (MQ=255)
                                                      tCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCACGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTg                                                                                 >  1:1504516/1‑140 (MQ=255)
                                                          ggAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCggg                                                                                            <  1:1361115/125‑1 (MQ=255)
                                                          ggAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCggg                                                                                            >  2:1361115/1‑125 (MQ=255)
                                                          ggAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAg                                                                             <  2:2118487/140‑1 (MQ=255)
                                                           gaagaaATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGa                                                                            >  1:822358/1‑140 (MQ=255)
                                                             agaaATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACa                                                                          >  2:1835996/1‑140 (MQ=255)
                                                               aaaTCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAAt                                                                        >  2:260064/1‑140 (MQ=255)
                                                                     agcagTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGc                                                                  <  2:485928/140‑1 (MQ=255)
                                                                      gcagTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCTCCACCGGGATCCCTGACTGGAAGACAATTTCTGcc                                                                 <  1:1112671/140‑1 (MQ=255)
                                                                      gcagTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGcc                                                                 <  1:260064/140‑1 (MQ=255)
                                                                      gcagTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGcc                                                                 <  2:519871/140‑1 (MQ=255)
                                                                      gcagTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGcc                                                                 <  1:1379907/140‑1 (MQ=255)
                                                                         gTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCt                                                              >  1:331853/1‑140 (MQ=255)
                                                                            cGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTcc                                                           >  2:406921/1‑140 (MQ=255)
                                                                            cGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTcc                                                           >  2:1784348/1‑140 (MQ=255)
                                                                            cGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTT‑AACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCg                                                          >  1:798800/1‑140 (MQ=255)
                                                                                aacaaTGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGt                                                       <  2:1386878/140‑1 (MQ=255)
                                                                                aacaaTGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGt                                                       <  1:1784348/140‑1 (MQ=255)
                                                                                      ggTTTAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGt                                                 <  2:44484/140‑1 (MQ=255)
                                                                                      ggTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGt                                                 <  2:194215/140‑1 (MQ=255)
                                                                                      ggTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGt                                                 <  1:1068384/140‑1 (MQ=255)
                                                                                            aaCAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAatat                                           >  2:1397808/1‑140 (MQ=255)
                                                                                                 ggTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTc                                                      <  1:1705509/124‑1 (MQ=255)
                                                                                                 ggTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGt                                                 <  2:1152629/129‑1 (MQ=255)
                                                                                                 ggTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGt                                                 >  1:1152629/1‑129 (MQ=255)
                                                                                                 ggTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAAt                                      >  2:489147/1‑140 (MQ=255)
                                                                                                 ggTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAAt                                      >  1:1245991/1‑140 (MQ=255)
                                                                                                  gTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAAtt                                     >  1:1446184/1‑140 (MQ=255)
                                                                                                   ttACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCTGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTc                                    >  2:1912917/1‑140 (MQ=255)
                                                                                                      ccAATCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGc                                 >  1:300214/1‑140 (MQ=255)
                                                                                                        aaTCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCg                               <  2:822358/140‑1 (MQ=255)
                                                                                                         aTCGCGCGGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGc                              <  2:589715/140‑1 (MQ=255)
                                                                                                           cgcgcgGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAg                            >  2:651995/1‑140 (MQ=255)
                                                                                                              gcgGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCCCCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCg                         <  2:195121/140‑1 (MQ=255)
                                                                                                              gcgGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCg                         <  2:331853/140‑1 (MQ=255)
                                                                                                              gcgGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCg                         <  1:1146819/140‑1 (MQ=255)
                                                                                                              gcgGAAACGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCg                         <  1:503373/140‑1 (MQ=255)
                                                                                                                   aaCGCTCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAg                    <  1:1733669/140‑1 (MQ=255)
                                                                                                                        tCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTAcc               <  2:351024/140‑1 (MQ=255)
                                                                                                                        tCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTAcc               <  2:1589994/140‑1 (MQ=255)
                                                                                                                        tCGGTGTCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTAcc               <  1:501759/140‑1 (MQ=255)
                                                                                                                           gtgtCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAg            <  1:1930000/140‑1 (MQ=255)
                                                                                                                            tgtCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGc           >  1:1011477/1‑140 (MQ=255)
                                                                                                                            tgtCTTCAACGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGc           >  1:1542091/1‑140 (MQ=255)
                                                                                                                                  cAACGTTGATTTGTGCTTTATGAGGAACATCCAGACCGGCCATCACCACC‑GGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGCCCCATAg    >  2:1481783/1‑140 (MQ=255)
                                                                                                                                    aCGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGCCCCATAgc   >  2:1440161/1‑140 (MQ=255)
                                                                                                                                    aCGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGCCCCATAgc   >  1:1600453/1‑140 (MQ=255)
                                                                                                                                     cGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGCCCCATAgcg  <  1:1835996/140‑1 (MQ=255)
                                                                                                                                     cGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGCCCCATAgcg  <  1:353536/140‑1 (MQ=255)
                                                                                                                                     cGTTGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGCCCCATAgcg  <  2:1504516/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
CATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTAAATATTAAATTCAGCCGCAGGCGTCCAGTTACCCAGCCCCATAGCG  >  NC_000913/683685‑683957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A