Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F48 I1 R1
|
508 |
125.6 |
4303852 |
99.2% |
4269421 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
731,365 |
G→T |
E595* (GAA→TAA) |
rhsC → |
rhs element protein RhsC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 731,365 | 0 | G | T | 100.0%
| 349.6
/ NA
| 101 | E595* (GAA→TAA) | rhsC | rhs element protein RhsC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (50/51); total (50/51) |
Only 100 of 102 total aligned reads displayed.
CCCGCTATGACCATGACCGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACGATGCTGC > NC_000913/731231‑731501
|
cccGCTATGACCATGACCGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATAc > 1:1484797/1‑140 (MQ=255)
cGCTATGACCATGACCGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACaa > 1:879876/1‑140 (MQ=255)
tATGACCATGACCGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCATTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAAcgc > 1:1805506/1‑140 (MQ=255)
tATGACCATGACCGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAAcgc > 2:387787/1‑140 (MQ=255)
tATGACCATGACCGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAAcgc > 2:1769259/1‑140 (MQ=255)
tATGACCATGACCGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAAcgc < 1:40329/140‑1 (MQ=255)
tATGACCATGACCGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCACACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAAcgc < 1:26146/140‑1 (MQ=255)
tgaccatgaccGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAAcgccg < 1:612890/140‑1 (MQ=255)
catgaccGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCgg > 2:10895/1‑140 (MQ=255)
catgaccGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCgg > 1:41271/1‑140 (MQ=255)
tgaccGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGt < 1:363534/139‑1 (MQ=255)
tgaccGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGt > 2:363534/1‑139 (MQ=255)
gaccGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGAATTAATACAACGCCGCCGGtga > 2:920142/1‑140 (MQ=255)
gTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGtgacctg > 1:1998677/1‑140 (MQ=255)
tttGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGtgacctgac < 1:1230444/140‑1 (MQ=255)
ttGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGtgacctgacc < 1:484638/140‑1 (MQ=255)
ggTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGaccac < 1:126721/140‑1 (MQ=255)
ggTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGaccac < 1:1269271/140‑1 (MQ=255)
ggTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCa < 2:879876/140‑1 (MQ=255)
ggTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCa < 2:1484797/140‑1 (MQ=255)
gTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCAt > 1:1687622/1‑140 (MQ=38)
gTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCAt > 1:994111/1‑140 (MQ=38)
gTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCAt > 2:670746/1‑140 (MQ=38)
gACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTg < 2:1198786/140‑1 (MQ=38)
ggcggTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTGTTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGccc > 2:49600/1‑140 (MQ=255)
cgAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGgcagca > 1:983523/1‑140 (MQ=37)
cgAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGgcagca > 1:1117244/1‑140 (MQ=37)
gAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGcagcag < 1:1769259/140‑1 (MQ=37)
gAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGcagcag < 2:1064970/140‑1 (MQ=37)
gAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGaaa < 1:670746/140‑1 (MQ=37)
gAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCAATGAAACGCGGTATTAAGACACCGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGaaa < 1:2140240/140‑1 (MQ=255)
aGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACg < 1:452668/140‑1 (MQ=37)
aGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCAGGTGACCTGACCTCCGTCATTGCCCCGGACGGCAGCAGAAACg < 1:920142/140‑1 (MQ=255)
ggCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACggg > 2:163169/1‑140 (MQ=37)
ggCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACggg > 1:1471553/1‑140 (MQ=37)
gCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGa < 2:1887170/140‑1 (MQ=37)
aGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGacac > 2:78005/1‑139 (MQ=37)
aGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGacac < 1:78005/139‑1 (MQ=37)
aGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGAcaca > 1:1491090/1‑140 (MQ=37)
aGTCAGTACCGAGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGAcaca < 2:1466724/140‑1 (MQ=255)
gTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACg > 2:2138337/1‑140 (MQ=37)
gTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACg > 1:837900/1‑140 (MQ=37)
atACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACg < 2:1687622/139‑1 (MQ=37)
cgcATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGt > 2:1448097/1‑140 (MQ=37)
cgcATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGt > 1:950955/1‑140 (MQ=37)
cgcATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGt > 1:1336206/1‑140 (MQ=37)
cgcATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGt > 1:676282/1‑140 (MQ=37)
cgcATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGt > 1:1930438/1‑140 (MQ=37)
cgcATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGt > 1:1974991/1‑140 (MQ=37)
gcATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTg > 1:818095/1‑140 (MQ=37)
aaCGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTgggg < 2:556167/139‑1 (MQ=37)
aCAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGaaaa < 1:1288395/140‑1 (MQ=38)
gCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGcc < 2:1471553/140‑1 (MQ=255)
ccGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCa > 2:1592185/1‑140 (MQ=255)
cGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCAt > 1:283348/1‑140 (MQ=255)
cGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCAt < 2:1491090/140‑1 (MQ=255)
cGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCAt < 1:1320886/140‑1 (MQ=255)
cGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCAt < 2:1998677/140‑1 (MQ=255)
cGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCAt < 2:929252/140‑1 (MQ=255)
tGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCt > 2:1180951/1‑140 (MQ=255)
tGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCt > 2:1939191/1‑140 (MQ=255)
tGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCt > 2:1598557/1‑140 (MQ=255)
aCAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCATCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTa < 2:1805506/140‑1 (MQ=255)
ttAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCAc > 2:1185462/1‑140 (MQ=255)
ttAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCAc > 2:488875/1‑140 (MQ=255)
tGCCGTGAAAGACACGCAGGGCCGTGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAgg > 1:1891126/1‑140 (MQ=255)
tGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAgg < 1:1592185/140‑1 (MQ=255)
ccGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGc > 1:1355266/1‑140 (MQ=255)
cGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCg > 2:1751498/1‑140 (MQ=255)
cGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCg > 1:581749/1‑140 (MQ=255)
cGTGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCg > 2:1115265/1‑140 (MQ=255)
tGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGt > 1:526284/1‑140 (MQ=255)
tGAAAGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGt > 1:690133/1‑140 (MQ=255)
aaaGACACGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCt > 2:1488676/1‑140 (MQ=255)
aacacGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAc < 2:740989/139‑1 (MQ=255)
acacGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcg < 2:1355266/140‑1 (MQ=255)
acacGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcg < 2:41271/140‑1 (MQ=255)
acacGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcg < 2:818095/140‑1 (MQ=255)
cacGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgc < 1:387787/140‑1 (MQ=255)
ccGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg < 1:584303/139‑1 (MQ=255)
acGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg < 2:761105/140‑1 (MQ=255)
acGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg < 2:526284/140‑1 (MQ=255)
acGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg < 1:1185462/140‑1 (MQ=255)
acGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg < 2:983523/140‑1 (MQ=255)
acGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg < 2:33967/140‑1 (MQ=255)
acGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg < 2:1974991/140‑1 (MQ=255)
acGCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg < 1:1751498/140‑1 (MQ=255)
gCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCa < 2:1897476/140‑1 (MQ=255)
gCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCa < 2:495212/140‑1 (MQ=255)
gCAGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCa < 2:1894054/140‑1 (MQ=255)
aGGGCCATGAAACGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGt < 1:10895/140‑1 (MQ=255)
aaCGCGGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACg < 1:163169/140‑1 (MQ=255)
cgcgGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACGAt > 1:432146/1‑140 (MQ=255)
cgcgGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACGAt > 1:1129505/1‑140 (MQ=255)
cgGTGTTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACGAtgc < 1:49600/140‑1 (MQ=255)
cgGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg < 2:1853480/122‑1 (MQ=255)
cgGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGAcgcg > 1:1853480/1‑122 (MQ=255)
cgGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACGAtgc > 1:210512/1‑140 (MQ=255)
cgGTATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACGAtgc > 1:1141369/1‑140 (MQ=255)
tATTAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACGAtgctgc < 2:1129505/140‑1 (MQ=255)
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CCCGCTATGACCATGACCGTTTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACGATGCTGC > NC_000913/731231‑731501
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
