Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	744,002	C→A	P137Q (CCG→CAG)	pxpB →	5‑oxoprolinase component B

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	744,002	0	C	A	100.0%	326.9 / NA	95	P137Q (CCG→CAG)	pxpB	5‑oxoprolinase component B
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (56/39); total (56/39)

GGTGGTTTACGGTGGTGCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCCGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCGGGTGGCTGG  >  NC_000913/743865‑744135

ggtggtTTACGGTGGTGCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGt                                                                                                                                     >  2:1974391/1‑140 (MQ=255)

 gtggtTTACGGTGGTGCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTa                                                                                                                                    >  2:2016410/1‑140 (MQ=255)

       tACGGTGGTGCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCgg                                                                                                                              >  2:1515729/1‑140 (MQ=255)

            tggtgCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGtt                                                                                                                         >  2:300085/1‑140 (MQ=255)

              gtgCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGtttt                                                                                                                       >  2:1743244/1‑139 (MQ=255)

              gtgCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGtttt                                                                                                                       >  2:576005/1‑139 (MQ=255)

              gtgCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTg                                                                                                                       >  1:772690/1‑140 (MQ=255)

              gtgCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTg                                                                                                                       >  2:2076162/1‑140 (MQ=255)

              gtgCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGATGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCAGGCTTCCAGTATCTCGGGAGTTTg                                                                                                                       >  1:1716214/1‑140 (MQ=255)

               tgCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGc                                                                                                                      >  1:237540/1‑140 (MQ=255)

                gCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGcc                                                                                                                     <  2:117984/140‑1 (MQ=255)

                  aGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCgg                                                                                                                   <  1:2076162/140‑1 (MQ=255)

                   ggCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGa                                                                                                                  <  2:1604154/140‑1 (MQ=255)

                   ggCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGa                                                                                                                  >  2:1362281/1‑140 (MQ=255)

                   ggCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGa                                                                                                                  >  2:1820240/1‑140 (MQ=255)

                   ggCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGa                                                                                                                  <  2:199329/140‑1 (MQ=255)

                    gCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGaa                                                                                                                 <  1:1241712/140‑1 (MQ=255)

                    gCGGACCGGATTTGGCGGCGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGaa                                                                                                                 >  2:1151967/1‑140 (MQ=255)

                      ggACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGaaca                                                                                                               >  2:2034527/1‑140 (MQ=255)

                       gACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGaacaa                                                                                                              <  1:2039342/140‑1 (MQ=255)

                        aCCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGaacaac                                                                                                             >  1:1550125/1‑140 (MQ=255)

                        aCCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGaacaac                                                                                                             >  2:890359/1‑140 (MQ=255)

                        aCCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGaacaac                                                                                                             >  2:650152/1‑140 (MQ=255)

                        aCCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGaa                                                                                                                 <  2:137426/136‑1 (MQ=255)

                        aCCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGaa                                                                                                                 >  1:137426/1‑136 (MQ=255)

                                  gCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGcc                                                                                                   >  1:215079/1‑140 (MQ=255)

                                   cGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCa                                                                                                  <  1:2058982/140‑1 (MQ=255)

                                   cGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCa                                                                                                  <  1:576005/140‑1 (MQ=255)

                                     gtggtCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCGGGAACAACTACACACGCCACg                                                                                                <  2:2051373/140‑1 (MQ=255)

                                     gtggtCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACg                                                                                                <  2:649513/140‑1 (MQ=255)

                                     gtggtCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACg                                                                                                <  1:158904/140‑1 (MQ=255)

                                     gtggtCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACg                                                                                                <  1:1362281/140‑1 (MQ=255)

                                     gtggtCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACg                                                                                                <  1:1494550/140‑1 (MQ=255)

                                     gtggtCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACg                                                                                                <  1:1394391/140‑1 (MQ=255)

                                      tggtCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACgg                                                                                               >  1:1731252/1‑140 (MQ=255)

                                          cgcgGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGgcgcg                                                                                           <  2:986572/140‑1 (MQ=255)

                                          cgcgGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGgcgcg                                                                                           <  2:1805661/140‑1 (MQ=255)

                                               cgcATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGaa                                                                                      <  1:1974391/140‑1 (MQ=255)

                                                gcATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAAc                                                                                     <  1:498154/140‑1 (MQ=255)

                                                gcATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAAc                                                                                     <  1:2016410/140‑1 (MQ=255)

                                                gcATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAAc                                                                                     <  2:1013222/140‑1 (MQ=255)

                                                   ttGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACcgc                                                                                  >  2:1870069/1‑140 (MQ=255)

                                                         gTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTAc                                                                            >  2:142186/1‑140 (MQ=255)

                                                             aGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGt                                                                        >  1:84535/1‑140 (MQ=255)

                                                              gCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACACCTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGtt                                                                       <  1:1515729/140‑1 (MQ=255)

                                                              gCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGtt                                                                       >  2:2134571/1‑140 (MQ=255)

                                                               cGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTc                                                                      >  1:128207/1‑140 (MQ=255)

                                                                   aaaCAGTTTGTTGAATTGCCCACCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGTTTCCGGTATCTCGGGAGTTTGCCGGAAAAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGc                                                                  <  2:298921/140‑1 (MQ=255)

                                                                   aaaCAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGc                                                                  <  1:664578/140‑1 (MQ=255)

                                                                      cAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAgg                                                               <  1:114087/140‑1 (MQ=255)

                                                                         gttgttGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTc                                                            >  2:2103280/1‑140 (MQ=255)

                                                                           tgttgAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTg                                                          <  2:501731/140‑1 (MQ=255)

                                                                                  ttGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGAt                                                   >  1:699334/1‑140 (MQ=255)

                                                                                      aCTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATcggc                                               <  2:1105786/140‑1 (MQ=255)

                                                                                       ctcctcCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATcggcg                                              >  2:2077696/1‑140 (MQ=255)

                                                                                       ctcctcCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATcggcg                                              >  1:202335/1‑140 (MQ=255)

                                                                                       ctcctcCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCACGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATcggcg                                              >  2:1808493/1‑140 (MQ=255)

                                                                                          ctccGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGTTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGc                                           >  2:1285789/1‑140 (MQ=255)

                                                                                          ctccGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGc                                           >  2:2069604/1‑140 (MQ=255)

                                                                                          ctccGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGc                                           >  2:2030590/1‑140 (MQ=255)

                                                                                            ccGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCg                                         <  1:1643770/140‑1 (MQ=255)

                                                                                               tGGAATACGTGGTCTGGTTTTTAGGTTTTCAACTGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAg                                      >  1:789580/1‑140 (MQ=255)

                                                                                               tGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAg                                      <  2:84535/140‑1 (MQ=255)

                                                                                                 gAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGAc                                    <  2:128207/140‑1 (MQ=255)

                                                                                                 gAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGAc                                    <  1:650152/140‑1 (MQ=255)

                                                                                                  aaTACGTGGTCTGGTTTTTAGGTTTTCAACTGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACt                                   <  2:789580/140‑1 (MQ=255)

                                                                                                  aaTACGTGGTCTGGTTTTTAGGTTTTCAACC‑GGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTg                                  <  2:1565999/140‑1 (MQ=255)

                                                                                                   aTACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTg                                  <  2:202335/140‑1 (MQ=255)

                                                                                                    tACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCCGACTgg                                 >  2:326056/1‑140 (MQ=255)

                                                                                                    tACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGGCTgt                                 >  2:660110/1‑139 (MQ=255)

                                                                                                    tACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTgg                                 >  1:221119/1‑140 (MQ=255)

                                                                                                    tACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCCCCGACttg                                 >  1:122674/1‑138 (MQ=255)

                                                                                                      cGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGGCGCCGACTgggt                               >  2:1858224/1‑138 (MQ=255)

                                                                                                      cGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGgtg                               >  1:1745710/1‑140 (MQ=255)

                                                                                                      cGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGgtg                               >  2:52282/1‑140 (MQ=255)

                                                                                                       gTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCCGACTGgtgt                              >  1:1297816/1‑140 (MQ=255)

                                                                                                         ggTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGttt                            >  1:1685017/1‑140 (MQ=255)

                                                                                                         ggTCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGgtt                            >  1:1142991/1‑140 (MQ=255)

                                                                                                           tCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGGCGCAGACTGGTGTTTAt                          >  1:464183/1‑140 (MQ=255)

                                                                                                           tCTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTtttttt                          >  1:1285275/1‑138 (MQ=255)

                                                                                                            cTGGTTTTTAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATc                         >  2:175042/1‑140 (MQ=255)

                                                                                                                    tAGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGTGCGCATCCTGGTGGTTTTTCGCAggga                 >  2:1334519/1‑138 (MQ=255)

                                                                                                                     aGGTTTTCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACAGGGGGTTATCCCCTGGcca                >  1:2127363/1‑138 (MQ=255)

                                                                                                                      ggTTTTCACCCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTCCACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAAc               <  1:1151967/140‑1 (MQ=255)

                                                                                                                         tttCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCCGACTGGTGTTTTTTCCCTTGCAAcccc            >  1:650899/1‑140 (MQ=255)

                                                                                                                         tttCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGcc            >  1:1784758/1‑140 (MQ=255)

                                                                                                                         tttCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGcc            >  2:1123361/1‑140 (MQ=255)

                                                                                                                         tttCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGcc            <  1:815473/140‑1 (MQ=255)

                                                                                                                         tttCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGcc            >  1:139363/1‑140 (MQ=255)

                                                                                                                         tttCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAAACGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCTGGCTGTGGTTTGTTCCCTTGCAAccac            >  1:1547109/1‑137 (MQ=255)

                                                                                                                         tttCAACCGGGCTTCCAGTATCACGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGcc            <  1:502835/140‑1 (MQ=255)

                                                                                                                          ttCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGTATCGGCGGGCCGCCGACTGGGGTTTATTCCCCGGCAACAccc           >  2:1104793/1‑139 (MQ=255)

                                                                                                                          ttCAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCg           >  1:603583/1‑140 (MQ=255)

                                                                                                                            cAACCGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCggg         <  1:1012225/140‑1 (MQ=255)

                                                                                                                                cGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCGGGtggc     <  1:1743244/140‑1 (MQ=255)

                                                                                                                                cGGGCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCGGGtggc     <  2:173666/140‑1 (MQ=255)

                                                                                                                                   gCTTCCAGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCGGGtggctgg  <  1:175042/140‑1 (MQ=255)

GGTGGTTTACGGTGGTGCAGGCGGACCGGATTTGGCGGTGGTCGCGGCGCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAACCGGGCTTCCCGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCAGGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCGGGTGGCTGG  >  NC_000913/743865‑744135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A