Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	801,271	C→A	T171T (ACC→ACA)	ybhH →	putative isomerase YbhH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	801,271	0	C	A	100.0%	455.4 / NA	131	T171T (ACC→ACA)	ybhH	putative isomerase YbhH
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (73/58); total (73/58)

Only 100 of 132 total aligned reads displayed.

GTACGTTCATCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACCGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAATTACCGG  >  NC_000913/801138‑801401

gTACGTTCATCGAAGCTGATGTTCAACCGCCAAATGGGGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGaaaa                                                                                                                              >  2:1604594/1‑140 (MQ=255)

gTACGTTCATCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCACCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGaaaa                                                                                                                              >  1:479844/1‑140 (MQ=255)

   cGTTCATCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGtt                                                                                                                           >  2:531882/1‑140 (MQ=255)

     ttCATCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGTAAAGtttt                                                                                                                         >  2:548697/1‑140 (MQ=255)

        aTCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTccc                                                                                                                      <  1:1360114/140‑1 (MQ=255)

        aTCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTccc                                                                                                                      <  1:536922/140‑1 (MQ=255)

        aTCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTccc                                                                                                                      >  2:515222/1‑140 (MQ=255)

        aTCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTccc                                                                                                                      >  1:1211575/1‑140 (MQ=255)

         tCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCg                                                                                                                     >  1:1410326/1‑140 (MQ=255)

          tgAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCgg                                                                                                                    <  2:1213307/139‑2 (MQ=255)

          cGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGa                                                                                                                    >  1:1998997/1‑140 (MQ=255)

          cGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGa                                                                                                                    >  2:1511838/1‑140 (MQ=255)

          cGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGa                                                                                                                    <  2:220614/140‑1 (MQ=255)

          cGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGa                                                                                                                    >  1:1568428/1‑140 (MQ=255)

            aaGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACt                                                                                                                  <  2:234335/140‑1 (MQ=255)

            aaGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACt                                                                                                                  <  2:1074084/140‑1 (MQ=255)

                  aTGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAAt                                                                                                            <  2:1399316/140‑1 (MQ=255)

                  aTGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAAt                                                                                                            >  2:897791/1‑140 (MQ=255)

                       cAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGGTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGCTTTCCCGACTGATAATCAgat                                                                                                       >  1:1768352/1‑140 (MQ=255)

                         aaCGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAgattg                                                                                                     >  1:1521174/1‑140 (MQ=255)

                         aaCGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAgattg                                                                                                     >  2:1985156/1‑140 (MQ=255)

                         aaCGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAgattg                                                                                                     <  2:1307865/140‑1 (MQ=255)

                          aCGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAgattga                                                                                                    <  2:1568428/140‑1 (MQ=255)

                           cGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAgattgat                                                                                                   <  2:2081857/140‑1 (MQ=255)

                            gCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAgattgatt                                                                                                  >  2:1325462/1‑140 (MQ=255)

                            gCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAgattgatt                                                                                                  >  2:118633/1‑140 (MQ=255)

                               aaaTGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGattatt                                                                                               >  1:1676944/1‑140 (MQ=255)

                                      gttgtCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGa                                                                                        >  2:409569/1‑140 (MQ=255)

                                      gttgtCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGa                                                                                        >  1:282029/1‑140 (MQ=255)

                                       ttgtCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGAt                                                                                       <  1:443106/140‑1 (MQ=255)

                                        tgtCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATg                                                                                      <  1:1101251/140‑1 (MQ=255)

                                             aGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCg                                                                                 <  2:1676944/140‑1 (MQ=255)

                                             aGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCg                                                                                 <  2:919484/140‑1 (MQ=255)

                                             aGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCg                                                                                 <  1:1172732/140‑1 (MQ=255)

                                             aGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCg                                                                                 <  2:81291/140‑1 (MQ=255)

                                              gTACGAGGGTAGCACCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCgg                                                                                <  2:479844/140‑1 (MQ=255)

                                               tACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGt                                                                               >  2:1786083/1‑140 (MQ=255)

                                                 cGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGa                                                                             <  2:1211575/140‑1 (MQ=255)

                                                 cGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGa                                                                             <  1:245133/140‑1 (MQ=255)

                                                  gAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGAc                                                                            <  1:1985156/140‑1 (MQ=255)

                                                  gAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGAc                                                                            <  1:1283775/140‑1 (MQ=255)

                                                  gAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGAc                                                                            <  1:164275/140‑1 (MQ=255)

                                                  gAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGAc                                                                            <  2:1506823/140‑1 (MQ=255)

                                                    gggTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCt                                                                          >  1:1437691/1‑140 (MQ=255)

                                                     ggTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTg                                                                         <  2:245239/140‑1 (MQ=255)

                                                      gTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGt                                                                        <  2:1260891/140‑1 (MQ=255)

                                                       tAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTa                                                                       >  2:1783105/1‑140 (MQ=255)

                                                        aGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTAt                                                                      >  1:1549037/1‑140 (MQ=255)

                                                          cgcCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCg                                                                    >  1:887569/1‑140 (MQ=255)

                                                          cgcCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCg                                                                    >  2:1239075/1‑140 (MQ=255)

                                                          cgcCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCg                                                                    >  1:1145037/1‑140 (MQ=255)

                                                            ccAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGat                                                                  <  2:282029/140‑1 (MQ=255)

                                                              aGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGatat                                                                >  2:952714/1‑140 (MQ=255)

                                                               gAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATg                                                               >  1:1059865/1‑140 (MQ=255)

                                                                      cGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGc                                                        >  2:2005108/1‑140 (MQ=255)

                                                                      cGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGc                                                        >  1:29578/1‑140 (MQ=255)

                                                                      cGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGc                                                        <  1:515222/140‑1 (MQ=255)

                                                                         cGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAg                                                     >  1:863949/1‑140 (MQ=255)

                                                                          gTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAgt                                                    >  2:1814351/1‑140 (MQ=255)

                                                                          gTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAgt                                                    <  2:887569/140‑1 (MQ=255)

                                                                          gTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAgt                                                    >  2:1390856/1‑140 (MQ=255)

                                                                           tACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAgtc                                                   >  1:1825404/1‑140 (MQ=255)

                                                                           tACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAgtc                                                   >  2:222625/1‑140 (MQ=255)

                                                                            aCCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAgtcg                                                  >  1:567551/1‑140 (MQ=255)

                                                                              cGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAgtcgtc                                                <  1:1622768/140‑1 (MQ=255)

                                                                                ggTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCat                                              >  2:308032/1‑140 (MQ=255)

                                                                                   aCTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCattat                                           <  1:550380/140‑1 (MQ=255)

                                                                                   aCTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCattat                                           >  2:1281393/1‑140 (MQ=255)

                                                                                     tGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGTTAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTTTATCGATATGGCGATTCCATTCGTCattattt                                         >  2:218825/1‑139 (MQ=255)

                                                                                     tGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTc                                         <  1:1168196/140‑1 (MQ=255)

                                                                                     tGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTc                                         >  1:811044/1‑140 (MQ=255)

                                                                                      gCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTcc                                        <  1:1390856/140‑1 (MQ=255)

                                                                                      gCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTcc                                        <  2:205641/140‑1 (MQ=255)

                                                                                       ccGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCTTCATTATTCCg                                       >  1:1343652/1‑140 (MQ=255)

                                                                                       ccGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCg                                       >  2:196818/1‑140 (MQ=255)

                                                                                          cACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTTACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCt                                    >  1:144906/1‑140 (MQ=255)

                                                                                          cACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCt                                    >  2:689163/1‑140 (MQ=255)

                                                                                           aCCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTg                                   >  1:1987734/1‑140 (MQ=255)

                                                                                               gTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAata                               >  1:212892/1‑140 (MQ=255)

                                                                                                ttGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAatat                              <  1:222625/140‑1 (MQ=255)

                                                                                                ttGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAatat                              <  2:1356839/140‑1 (MQ=255)

                                                                                                 tGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAatatt                             >  2:1306050/1‑139 (MQ=255)

                                                                                                     cTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTggg                         >  1:1331963/1‑140 (MQ=255)

                                                                                                     cTCACTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTggg                         <  2:1025921/140‑1 (MQ=255)

                                                                                                         cTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGaaaa                     >  1:653834/1‑140 (MQ=255)

                                                                                                         cTTTCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGaaaa                     <  1:176267/140‑1 (MQ=255)

                                                                                                          tttCCTGAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGaaaaa                    <  2:939197/140‑1 (MQ=255)

                                                                                                                gAATGCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGtt              <  2:212892/140‑1 (MQ=255)

                                                                                                                    gCCGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGa          >  1:1498115/1‑140 (MQ=255)

                                                                                                                      cGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAAc                   <  1:676438/129‑1 (MQ=255)

                                                                                                                      cGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAAc                   >  2:676438/1‑129 (MQ=255)

                                                                                                                      cGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAAt        >  1:1045896/1‑140 (MQ=255)

                                                                                                                      cGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAAt        >  2:591333/1‑140 (MQ=255)

                                                                                                                      cGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAAt        >  2:374101/1‑140 (MQ=255)

                                                                                                                      cGCTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAAt        >  1:2007830/1‑140 (MQ=255)

                                                                                                                        cTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAATTa      >  1:352372/1‑140 (MQ=255)

                                                                                                                        cTGGAACCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAATTa      >  2:1210631/1‑140 (MQ=255)

                                                                                                                            aaCCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTTACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAATTACcgg  <  2:144906/140‑1 (MQ=255)

                                                                                                                            aaCCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAATTACcgg  <  1:745325/140‑1 (MQ=255)

                                                                                                                            aaCCAAAACAGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAATTACcgg  <  2:1045896/140‑1 (MQ=255)

GTACGTTCATCGAAGCTGATGTGCAAACGCCAAATGGTGTTGTCGAGTACGAGGGTAGCGCCAGAATTGACGGCGTACCGGGTACTGCCGCACCGGTTGCGCTCACTTTCCTGAATGCCGCTGGAACCAAAACCGGAAAAGTTTTCCCGACTGATAATCAGATTGATTATTTTGACGATGTCCCGGTGACCTGTATCGATATGGCGATGCCAGTCGTCATTATTCCGGCTGAATATCTGGGAAAAACAGGTTATGAATTACCGG  >  NC_000913/801138‑801401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A