Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 803,877 G→T P125P (CCG→CCT)  ybhJ → putative hydratase YbhJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913803,8770GT100.0% 210.8 / NA 62P125P (CCG→CCT) ybhJputative hydratase YbhJ
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (2/60);  total (2/60)

TTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTAA  >  NC_000913/803749‑804013
                                                                                                                                |                                                                                                                                          
ttCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGt                                                                                                                                <  1:522823/140‑1 (MQ=255)
ttCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGt                                                                                                                                <  2:313086/140‑1 (MQ=255)
  cccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTca                                                                                                                              <  1:1053024/140‑1 (MQ=255)
  cccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTca                                                                                                                              <  2:1991404/140‑1 (MQ=255)
  cccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTca                                                                                                                              <  2:374272/140‑1 (MQ=255)
  cccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTca                                                                                                                              <  2:490764/140‑1 (MQ=255)
   ccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcat                                                                                                                             <  1:960852/140‑1 (MQ=255)
   ccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcat                                                                                                                             <  1:759185/140‑1 (MQ=255)
   ccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcat                                                                                                                             <  1:669257/140‑1 (MQ=255)
   ccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcat                                                                                                                             <  1:656134/140‑1 (MQ=255)
   ccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcat                                                                                                                             <  2:1286577/140‑1 (MQ=255)
   ccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcat                                                                                                                             <  1:1499751/140‑1 (MQ=255)
   ccGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcat                                                                                                                             <  1:1041200/140‑1 (MQ=255)
     gCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatcc                                                                                                                           <  1:1347849/140‑1 (MQ=255)
     gCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatcc                                                                                                                           <  2:570563/140‑1 (MQ=255)
     gCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatcc                                                                                                                           <  1:603055/140‑1 (MQ=255)
     gCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatcc                                                                                                                           <  1:278662/140‑1 (MQ=255)
       tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatccat                                                                                                                         <  2:402206/140‑1 (MQ=255)
       tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatccat                                                                                                                         <  1:84098/140‑1 (MQ=255)
       tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatccat                                                                                                                         <  1:724846/140‑1 (MQ=255)
       tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatccat                                                                                                                         <  1:990013/140‑1 (MQ=255)
       tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatccat                                                                                                                         <  2:901136/140‑1 (MQ=255)
       tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatccat                                                                                                                         <  1:2151811/140‑1 (MQ=255)
       tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatccat                                                                                                                         <  2:1608043/140‑1 (MQ=255)
       tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatccat                                                                                                                         <  2:850197/140‑1 (MQ=255)
       tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTcatccat                                                                                                                         <  1:1682994/140‑1 (MQ=255)
         ccGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCa                                                                                                                       <  2:354400/140‑1 (MQ=255)
              tgtgCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAatata                                                                                                                  <  1:453018/140‑1 (MQ=255)
                  cTGACCATCTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCg                                                                                                              <  1:167439/140‑1 (MQ=255)
                   tGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGt                                                                                                             <  1:1000159/140‑1 (MQ=255)
                   tGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGGATTTTTTTTGCCCCCCCTT‑TTTTGGTCCTCCCTCAATATATTCGt                                                                                                             >  2:943274/1‑140 (MQ=255)
                      ccAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTgag                                                                                                          >  1:1164911/1‑140 (MQ=255)
                          cTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGGGTTTTTTTTGCTCCCCCTA‑TTTCGGTCCTCCCTTCATATATGTGTGAgatgt                                                                                                      >  2:1384366/1‑139 (MQ=255)
                                    tcactcTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAggcgg                                                                                            <  2:417672/140‑1 (MQ=255)
                                     cactcTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGGATTTTTTTTTCTCCTCCTT‑TTTCGGGCATCCCTCCATATATGTGTGGGATGATGGCAgggggg                                                                                           >  2:1348604/1‑139 (MQ=255)
                                      actcTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAggcggc‑g                                                                                         <  1:996165/140‑1 (MQ=255)
                                       ctctGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTTTTTTTTTTTCCCCTCTTA‑TTGTGGGCCTCCCTCCATATATGTGTGGGATGATTGCAggcggg‑gg                                                                                        >  2:996165/1‑140 (MQ=255)
                                         ctGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGTGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCa                                                                                      <  2:195753/140‑1 (MQ=255)
                                              ccGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATg                                                                                 <  1:1507028/140‑1 (MQ=255)
                                                 tCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGAATTTTTTTTCCTCCCCCTATTTTCGCGCAACC‑CCAATATATTCGTTGGAGGAAAGCAGGCGGCGGGCaaaaaaat                                                                               >  2:1064487/1‑136 (MQ=255)
                                                    gcggcACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTc                                                                           <  1:943274/140‑1 (MQ=255)
                                                            aTTCACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGa                                                                   <  2:1588252/140‑1 (MQ=255)
                                                            aTTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGTGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGa                                                                   <  2:1620638/140‑1 (MQ=255)
                                                            aTTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGa                                                                   <  1:266990/140‑1 (MQ=255)
                                                            aTTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGa                                                                   <  2:290029/140‑1 (MQ=255)
                                                                aCGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGc                                                               <  2:1164911/140‑1 (MQ=255)
                                                                 cGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGcc                                                              <  1:2080730/140‑1 (MQ=255)
                                                                     gatgaCCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTTGCCCCCCCTA‑TTGGGGTCCTCCATCAAAATTTTCGTGAGATGATGGCAGGCGGG‑GGGAAAATGATCCTCGGGTCAGACAACCacac                                                          >  2:660269/1‑140 (MQ=255)
                                                                     gatgaCCATGTTTTTGGTTTATCGGCGACCCAGCGTTATGGCGGTATTTTTTTTCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGGGATGATGGCAGGGGGC‑GGCAAAAAGATCCTCGGGTCAGACAGCCccac                                                          >  2:598764/1‑140 (MQ=255)
                                                                       tgaCCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTGGCTCCTCCAA‑TTTCGGGCATCCATCAATATATTCGTGAGATGATGGCAGGCGGC‑GGGGAAATGATCCTCCGGTTAGacaaccacaacc                                                        >  2:1389157/1‑140 (MQ=255)
                                                                       tgaCCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGGTTTTTTTTTTCTCCTCCTA‑TTTTGGGCCTCCCTCAAAATATGGGTGGGATTATTGCAGGGGGC‑GGCCAAAATTTTCTCCGGTCCGACAGCCCCAccc                                                        >  2:1314256/1‑140 (MQ=255)
                                                                           cATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTa                                                    <  2:1006524/140‑1 (MQ=255)
                                                                           agtGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTa                                                    <  1:2070234/138‑1 (MQ=255)
                                                                            aTGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGT‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTAc                                                   <  1:988843/140‑1 (MQ=255)
                                                                             tGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACg                                                  <  2:1514268/140‑1 (MQ=255)
                                                                              gTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTTTCTCCTCATA‑TTGCGGGCCTCCCTCAATATATGCGGGGGATGATGGCAGGCGGG‑GGGGAAAAGATCCTCCGGTCAGGCAGCCACCCCCCCTACgg                                                 >  2:1199159/1‑140 (MQ=255)
                                                                              gTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACgg                                                 <  1:1388750/140‑1 (MQ=255)
                                                                               tttttGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGt                                                <  1:1064487/140‑1 (MQ=255)
                                                                               tttttGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGt                                                <  2:924456/140‑1 (MQ=255)
                                                                                    ggTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCAtt                                           <  2:1615768/140‑1 (MQ=255)
                                                                                     gTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTGGCCCCTCATA‑TTTCGGGCATCCCTTAATAAATGCGTGAGATGATGGCAGGGGGG‑GGGAAAATGGTCCTCCGGTCCGACACCCCCACCCCTTACGGTGGAttt                                          >  2:920390/1‑139 (MQ=255)
                                                                                       ttATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAgg                                        <  1:1271089/140‑1 (MQ=255)
                                                                                         aTCGGCGGCCCAGCGTTATGGCGGTATTTTTTTGTCTCCCCCTT‑TTTCGGGCCTCCCTCAATATATGCGTGAGGTGGTTGCAGGCGGG‑GGCAAAATGAATCCCGGGTCCGGCAACCCCACCCCTTTCGGTGCCTTTgggt                                      >  2:164371/1‑139 (MQ=255)
                                                                                               ggcCCAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATgg                                <  1:403165/140‑1 (MQ=255)
                                                                                                 cccAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCa                              <  2:604408/140‑1 (MQ=255)
                                                                                                  ccAGCGTTATGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAg                             <  1:1785046/140‑1 (MQ=255)
                                                                                                           tGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑AGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAgg                    <  1:2101488/140‑1 (MQ=255)
                                                                                                           tGGCGGTATTTTTGTGCCTCCTCATA‑TTGCGGGCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAAAGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAgg                    >  2:2048220/1‑140 (MQ=255)
                                                                                                            ggCGGTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGGCAGCAACACCCGTTACGGTGCATTAGTGACAATGGCAGTCGGTGAggg                   <  1:1260487/140‑1 (MQ=255)
                                                                                                              gggTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGggcg                 <  1:1220772/139‑1 (MQ=255)
                                                                                                                gTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGggcggc               <  1:1471972/140‑1 (MQ=255)
                                                                                                                gTATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGggcggc               <  1:660269/140‑1 (MQ=255)
                                                                                                                 tATTTTTGTGCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGgcggcg              <  1:598764/140‑1 (MQ=255)
                                                                                                                       tgtgCCTCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGt        <  1:1199159/140‑1 (MQ=255)
                                                                                                                           cctcctCATA‑TTGCGGTCATCTATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGt    >  1:2028409/1‑140 (MQ=255)
                                                                                                                             tCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTaa  >  1:2065743/1‑140 (MQ=255)
                                                                                                                             tCCTCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGA‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGAAAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTaa  >  1:982944/1‑140 (MQ=255)
                                                                                                                                |                                                                                                                                          
TTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATA‑TTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGC‑GGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTAA  >  NC_000913/803749‑804013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A