Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 822,058 G→T T147T (ACC→ACA)  ybhN ← conserved inner membrane protein YbhN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913822,0580GT98.3% 390.4 / NA 118T147T (ACC→ACA) ybhNconserved inner membrane protein YbhN
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base T (57/59);  total (57/61)
Fisher's exact test for biased strand distribution p-value = 4.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 124 total aligned reads displayed.

TTGATGGTCATATGGCGGTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCGGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATGCCGCCGACC  >  NC_000913/821921‑822193
                                                                                                                                         |                                                                                                                                       
 tGATGGTCATATGGCGGTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTa                                                                                                                                      <  1:845104/140‑1 (MQ=255)
 tGATGGTCATATGGCGGTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTa                                                                                                                                      <  1:956949/140‑1 (MQ=255)
     ggTCATATGGCGGTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGa                                                                                                                                  <  1:322260/140‑1 (MQ=255)
         atatGGCGGTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAAt                                                                                                                              >  1:1562803/1‑140 (MQ=255)
           atGGCGGTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATcc                                                                                                                            >  2:1869867/1‑140 (MQ=255)
                ggTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGcc                                                                                                                       >  1:148332/1‑140 (MQ=255)
                 gTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCa                                                                                                                      >  1:497168/1‑140 (MQ=255)
                 gTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCa                                                                                                                      >  1:1666697/1‑140 (MQ=255)
                 gTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCa                                                                                                                      >  2:1994955/1‑140 (MQ=255)
                    cTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTa                                                                                                                   <  2:1445044/140‑1 (MQ=255)
                    cTTCGCGAAAGCGCAAAAACACAAAAAAAACCCGATAAACATCAGTAAGCCAATGCCCAGAAAAAGCAGCGCAGGTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTa                                                                                                                   >  2:1719222/1‑140 (MQ=255)
                      tCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTaaa                                                                                                                 >  1:804902/1‑140 (MQ=255)
                            aaGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCGGTAAAGATAATCCCTGCCAGTAAAATGTAg                                                                                                           <  1:1892619/140‑1 (MQ=255)
                                 cAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCccag                                                                                                      <  2:444157/140‑1 (MQ=255)
                                       cacaAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGtt                                                                                                <  2:1562803/140‑1 (MQ=255)
                                       cacaAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGtt                                                                                                <  1:1994955/140‑1 (MQ=255)
                                       aacaAATAAACCGCGATAATCTTCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGtt                                                                                                <  2:804902/139‑1 (MQ=255)
                                       aacaAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGtt                                                                                                <  2:1710234/139‑1 (MQ=255)
                                       aacaAAAAAACCGCGATAACCATCAGTAAGCGAATCGCGAGAATCCGCGGGAAAGTTTGATCGAAATACAAGGGACCCGTAATCTCCACCGCCTTTGCTGTAAAAAAAAACCCTGCAAATAAAATGTAGCCCAGCCAGtt                                                                                                <  2:69510/139‑1 (MQ=255)
                                         caAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTtgg                                                                                              <  1:843031/140‑1 (MQ=255)
                                         caAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTtgg                                                                                              <  1:1428913/140‑1 (MQ=255)
                                         aaaaTAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTtgg                                                                                              <  2:239436/139‑1 (MQ=255)
                                         aaaaTAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTtgg                                                                                              <  2:1101213/139‑1 (MQ=255)
                                                 acgcgATAATCATAAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGCCATCCCAGTGATACGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATa                                                                                      <  2:811994/139‑1 (MQ=255)
                                                  cgcgATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGAAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATAc                                                                                     <  2:1685199/140‑1 (MQ=255)
                                                               aGTAAGCCAATGCCGAGAATACGCTGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCCCCACGCCTGCGGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAAt                                                                        <  2:1037303/140‑1 (MQ=255)
                                                               aGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAAt                                                                        >  2:1895706/1‑140 (MQ=255)
                                                                 aaaGCCAATGCCGAAAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATcc                                                                      <  2:1138632/139‑1 (MQ=255)
                                                                  aaGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCcg                                                                     <  1:2081687/140‑1 (MQ=255)
                                                                   aGCCAATGTCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCcg                                                                     >  2:828882/1‑139 (MQ=255)
                                                                   aGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCcgc                                                                    >  2:881475/1‑140 (MQ=255)
                                                                   aGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCcgc                                                                    >  1:1014190/1‑140 (MQ=255)
                                                                   aGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCcgc                                                                    >  2:1549572/1‑140 (MQ=255)
                                                                     ccAATGCCGAGATTACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCAGCGt                                                                  >  2:304975/1‑140 (MQ=255)
                                                                        aTGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAAt                                                               >  2:1982382/1‑140 (MQ=255)
                                                                        aTGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAAt                                                               <  1:68009/140‑1 (MQ=255)
                                                                         tGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATa                                                              >  2:1188284/1‑140 (MQ=255)
                                                                         tGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATa                                                              >  2:777563/1‑140 (MQ=255)
                                                                         tGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATa                                                              >  2:1013211/1‑140 (MQ=255)
                                                                         tGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATa                                                              >  1:1062657/1‑140 (MQ=255)
                                                                          gCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAg                                                             <  1:777563/140‑1 (MQ=255)
                                                                          gCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAg                                                             <  1:1982382/140‑1 (MQ=255)
                                                                           ccGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGt                                                            >  2:287848/1‑140 (MQ=255)
                                                                              agaATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCt                                                         >  1:122068/1‑140 (MQ=255)
                                                                              agaATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCt                                                         >  1:946348/1‑140 (MQ=255)
                                                                              agaATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCt                                                         >  2:1720613/1‑140 (MQ=255)
                                                                               gaATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTa                                                        <  1:881475/140‑1 (MQ=255)
                                                                               gaATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTa                                                        <  1:1895706/140‑1 (MQ=255)
                                                                                    cGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCggg                                                   >  1:1120713/1‑140 (MQ=255)
                                                                                     gCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGc                                                  >  1:1583328/1‑140 (MQ=255)
                                                                                     gCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGc                                                  <  1:1720613/140‑1 (MQ=255)
                                                                                     gCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGc                                                  <  2:122068/140‑1 (MQ=255)
                                                                                      cAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCa                                                 >  2:1150589/1‑140 (MQ=255)
                                                                                       aGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCaa                                                >  2:2130930/1‑140 (MQ=255)
                                                                                          gTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAAccc                                             >  1:412082/1‑140 (MQ=255)
                                                                                          gTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAAccc                                             <  1:526649/140‑1 (MQ=255)
                                                                                          gTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAAccc                                             >  1:1503446/1‑140 (MQ=255)
                                                                                          gTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAAccc                                             <  2:1970019/140‑1 (MQ=255)
                                                                                            aGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCa                                           <  1:374882/140‑1 (MQ=255)
                                                                                              tttGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGa                                         >  1:2080620/1‑140 (MQ=255)
                                                                                              tttGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGa                                         >  1:898993/1‑140 (MQ=255)
                                                                                              tttGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGa                                         <  2:497168/140‑1 (MQ=255)
                                                                                              tttGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCGGTAAAGATAATCCCCGCCATTAAAATGTATCCCAGCCAGTTGTCTGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGCCAACCCCAGa                                         >  2:796032/1‑140 (MQ=255)
                                                                                               ttGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGAc                                        <  2:1050926/140‑1 (MQ=255)
                                                                                               ttGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGAc                                        <  1:1719222/140‑1 (MQ=255)
                                                                                               ttGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGAc                                        <  1:1165985/140‑1 (MQ=255)
                                                                                                 aaacGACATACCAGTGATCCGGCAACTCCCCCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACga                                      <  2:1120713/137‑1 (MQ=255)
                                                                                                        aTACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACTCCAGACgaga                                    >  2:1680994/1‑135 (MQ=255)
                                                                                                        aTACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACTCCAGACgaga                                    <  1:1680994/135‑1 (MQ=255)
                                                                                                        aTACCAGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACgaga                                    >  2:1849411/1‑135 (MQ=255)
                                                                                                          aCCAGTAATCGGGAAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACaaa                             <  2:758427/140‑1 (MQ=255)
                                                                                                             aGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGa                          <  2:1503446/140‑1 (MQ=255)
                                                                                                             aGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGa                          <  1:171306/140‑1 (MQ=255)
                                                                                                             aGTGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCAGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGa                          <  1:1063719/140‑1 (MQ=255)
                                                                                                               tGATCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATa                        >  2:1222933/1‑140 (MQ=255)
                                                                                                                 aTCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAgc                      >  1:1509058/1‑140 (MQ=255)
                                                                                                                 aTCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAgc                      >  2:1172884/1‑140 (MQ=255)
                                                                                                                 aTCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAgc                      >  2:1022716/1‑140 (MQ=255)
                                                                                                                 aTCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAgc                      >  2:515791/1‑140 (MQ=255)
                                                                                                                 aTCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAgc                      >  1:1140023/1‑140 (MQ=255)
                                                                                                                 aTCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAgc                      >  1:839265/1‑140 (MQ=255)
                                                                                                                 aTCCGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAgc                      <  2:1062657/140‑1 (MQ=255)
                                                                                                                    cGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCa                   >  2:1928810/1‑140 (MQ=255)
                                                                                                                    cGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCa                   >  1:437664/1‑140 (MQ=255)
                                                                                                                    cGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCa                   >  1:188291/1‑140 (MQ=255)
                                                                                                                    cGGCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCa                   >  1:1860196/1‑140 (MQ=255)
                                                                                                                     ggCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCAt                  >  1:1113678/1‑140 (MQ=255)
                                                                                                                     ggCAACTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCAt                  >  1:238478/1‑140 (MQ=255)
                                                                                                                          cTCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCaa             <  2:1565547/140‑1 (MQ=255)
                                                                                                                           tCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAAt            <  1:154682/140‑1 (MQ=255)
                                                                                                                           tCCACCACGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAAt            <  2:412082/140‑1 (MQ=255)
                                                                                                                               ccacGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATgccg        <  2:148332/140‑1 (MQ=255)
                                                                                                                                cacGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATgccgc       <  1:989854/140‑1 (MQ=255)
                                                                                                                                 acGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATgccgcc      <  1:1153575/140‑1 (MQ=255)
                                                                                                                                 acGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATgccgcc      <  2:1509058/140‑1 (MQ=255)
                                                                                                                                 acGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATgccgcc      <  1:2130930/140‑1 (MQ=255)
                                                                                                                                  cGCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATGccgccg     >  1:2133685/1‑140 (MQ=255)
                                                                                                                                   gCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCTTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATGCCGCCGa    <  2:1672955/140‑1 (MQ=255)
                                                                                                                                   gCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATGCCGCCGa    <  2:1583328/140‑1 (MQ=255)
                                                                                                                                   gCCTGCTGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATGCCGCCGa    <  1:209045/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TTGATGGTCATATGGCGGTGCTTCGCGAAAGCGCAAAACCACAAATAAACCGCGATAATCATCAGTAAGCCAATGCCGAGAATACGCAGCGTAGTTTGATCGACATACCAGTGATCCGGCAACTCCACCACGCCTGCGGTAAAGATAATCCCTGCCAGTAAAATGTAGCCCAGCCAGTTGGTGGTAATACTGAGCGAGAAAATCCGCGTAATAGTGCTACCGGGCAACCCCAGACGAGAGTACAAACGATAGCGCATACCAATGCCGCCGACC  >  NC_000913/821921‑822193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A