Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	850,720	G→T	G91C (GGT→TGT)	ompX →	outer membrane protein X

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	850,720	0	G	T	100.0%	489.3 / NA	140	G91C (GGT→TGT)	ompX	outer membrane protein X
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (65/75); total (65/75)

Only 100 of 144 total aligned reads displayed.

GCGGTTTCAACCTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTGGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTACGGTGCGGGT  >  NC_000913/850583‑850854

gCGGTTTCAACCTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGt                                                                                                                                      >  2:1171231/1‑140 (MQ=255)

 cGGTTTCAACCTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTc                                                                                                                                     <  1:1587743/140‑1 (MQ=255)

     ttCAACCTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGc                                                                                                                                 >  1:1091378/1‑140 (MQ=255)

       cAACCTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCtt                                                                                                                               >  1:376339/1‑140 (MQ=255)

       cAACCTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCtt                                                                                                                               >  1:495298/1‑140 (MQ=255)

        aaCCTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTa                                                                                                                              <  2:916642/140‑1 (MQ=255)

         aCCTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTAc                                                                                                                             >  2:898106/1‑140 (MQ=255)

          ccTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTAcc                                                                                                                            <  1:1042589/140‑1 (MQ=255)

          acTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTAcc                                                                                                                            <  2:276938/139‑1 (MQ=255)

            tGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGc                                                                                                                          <  1:898106/140‑1 (MQ=255)

              aaaTACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCAt                                                                                                                        >  2:1113372/1‑140 (MQ=255)

                    cGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGa                                                                                                                  >  2:307882/1‑140 (MQ=255)

                    cGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGa                                                                                                                  >  2:1342466/1‑140 (MQ=255)

                      cTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACt                                                                                                                >  1:1639996/1‑140 (MQ=255)

                      cTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACt                                                                                                                <  1:1004289/140‑1 (MQ=255)

                        aTGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTgg                                                                                                              >  1:1714368/1‑140 (MQ=255)

                        aTGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTgg                                                                                                              >  2:501861/1‑140 (MQ=255)

                         tGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTa                                                                                                                              >  1:1198725/1‑123 (MQ=255)

                         tGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTggg                                                                                                             >  1:142871/1‑140 (MQ=255)

                          gaagaaGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGc                                                                                                            <  1:941061/140‑1 (MQ=255)

                              aagaCAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGc                                                                                                        <  1:1616709/140‑1 (MQ=255)

                              aagaCAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGc                                                                                                        >  2:1881450/1‑140 (MQ=255)

                              aagaCAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGc                                                                                                        <  1:10669/140‑1 (MQ=255)

                                gaCAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTGCGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCAt                                                                                                      <  1:1965630/140‑1 (MQ=255)

                                 acaacaGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATc                                                                                                     >  1:1925260/1‑140 (MQ=255)

                                  caacaGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCt                                                                                                    <  1:884528/140‑1 (MQ=255)

                                   aacaGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTa                                                                                                   >  2:778449/1‑140 (MQ=255)

                                   aacaGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTa                                                                                                   <  2:1432260/140‑1 (MQ=255)

                                   aacaGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTa                                                                                                   <  2:1714368/140‑1 (MQ=255)

                                    acaGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTAc                                                                                                  <  2:1230969/140‑1 (MQ=255)

                                    acaGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTAc                                                                                                  <  2:1938347/140‑1 (MQ=255)

                                    acaGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTAc                                                                                                  <  1:1262271/140‑1 (MQ=255)

                                     caGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTggg                                                                                                             <  2:262745/128‑1 (MQ=255)

                                     caGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTAc                                                                                                  >  2:258483/1‑139 (MQ=255)

                                     caGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTAc                                                                                                  <  1:258483/139‑1 (MQ=255)

                                     caGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACg                                                                                                 >  2:473832/1‑140 (MQ=255)

                                     caGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACg                                                                                                 >  1:488702/1‑140 (MQ=255)

                                     caGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACg                                                                                                 >  1:2025957/1‑140 (MQ=255)

                                     caGCCCGCTGGGAGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACg                                                                                                 >  1:689908/1‑140 (MQ=255)

                                     aaGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACg                                                                                                 <  2:639062/139‑1 (MQ=255)

                                        cccGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCa                                                                                                           <  2:795235/127‑1 (MQ=255)

                                        cccGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCa                                                                                                           >  1:795235/1‑127 (MQ=255)

                                        cccGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGgtg                                                                                              >  1:1125886/1‑140 (MQ=255)

                                        cccGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGgtg                                                                                              >  1:1026850/1‑140 (MQ=255)

                                          cGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTa                                                                                            >  2:1778806/1‑140 (MQ=255)

                                          cGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTa                                                                                            <  1:1149532/140‑1 (MQ=255)

                                           gCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTTGGCAAGCATCTACGGTGTAg                                                                                           <  2:689908/140‑1 (MQ=255)

                                           gCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAg                                                                                           <  2:488702/140‑1 (MQ=255)

                                           gCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAg                                                                                           >  1:962180/1‑140 (MQ=255)

                                           gCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAg                                                                                           <  2:1210826/140‑1 (MQ=255)

                                            cTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAgt                                                                                          <  1:1171231/140‑1 (MQ=255)

                                            atGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAgt                                                                                          <  2:855048/139‑1 (MQ=255)

                                                 tgtgATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAgtgggtg                                                                                     <  2:156297/140‑1 (MQ=255)

                                                 tgtgATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAgtgggtg                                                                                     <  2:2025957/140‑1 (MQ=255)

                                                 tgtgATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAgtgggtg                                                                                     >  1:1769883/1‑140 (MQ=255)

                                                    gATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAgtgggtgtgg                                                                                  >  2:188911/1‑140 (MQ=255)

                                                     aTCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAgtgggtgtggg                                                                                 <  2:1639996/140‑1 (MQ=255)

                                                       cGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGtt                                                                               <  1:256102/140‑1 (MQ=255)

                                                        ggTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTa                                                                              <  1:1599661/140‑1 (MQ=255)

                                                        ggTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTa                                                                              <  2:945704/140‑1 (MQ=255)

                                                         gTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTAt                                                                             >  1:131795/1‑140 (MQ=255)

                                                         gTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTAt                                                                             >  1:1298956/1‑140 (MQ=255)

                                                          ttCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTAtt                                                                            >  2:673831/1‑139 (MQ=255)

                                                          ttCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATg                                                                            >  1:343324/1‑140 (MQ=255)

                                                            atttCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGt                                                                          <  2:523786/139‑1 (MQ=255)

                                                             tttCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTa                                                                         <  1:969922/140‑1 (MQ=255)

                                                                   ttACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTTCAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTcc                                                                   <  1:188911/140‑1 (MQ=255)

                                                                    tACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGTATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCa                                                                  >  1:1909743/1‑140 (MQ=255)

                                                                    tACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCa                                                                  <  2:1134837/140‑1 (MQ=255)

                                                                       acCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGAc                                                               >  2:1044090/1‑140 (MQ=255)

                                                                       acCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGAc                                                               <  2:131795/140‑1 (MQ=255)

                                                                         cGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCa                                                             >  2:2008282/1‑140 (MQ=255)

                                                                           agaAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACt                                                           >  1:1461100/1‑140 (MQ=255)

                                                                           agaAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACt                                                           >  2:20891/1‑140 (MQ=255)

                                                                                 gCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATAc                                                     >  2:1487530/1‑140 (MQ=255)

                                                                                  ccGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGTATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATAcc                                                    <  2:1909743/140‑1 (MQ=255)

                                                                                  ccGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATAcc                                                    <  1:501861/140‑1 (MQ=255)

                                                                                  ccGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATAcc                                                    <  1:307882/140‑1 (MQ=255)

                                                                                     tACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGa                                                 <  2:1243188/140‑1 (MQ=255)

                                                                                             gCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACaaa                                         <  1:473832/140‑1 (MQ=255)

                                                                                                 tGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACg                                     <  2:1298956/140‑1 (MQ=255)

                                                                                                      aCTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACAcc                                <  1:1778806/140‑1 (MQ=255)

                                                                                                       cTACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGGGAAGTGGGTGGGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACgccccaa                               >  1:602384/1‑134 (MQ=255)

                                                                                                        tACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAg                              >  2:1210640/1‑140 (MQ=255)

                                                                                                        tACAACAAAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAg                              >  2:859100/1‑140 (MQ=255)

                                                                                                             caaAAACCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCGTTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACt                         >  1:669470/1‑140 (MQ=255)

                                                                                                                aaaCCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACg                      <  1:1123018/140‑1 (MQ=255)

                                                                                                                  aCCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGt                    <  1:859100/140‑1 (MQ=255)

                                                                                                                  aCCAGTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGt                    <  1:1881450/140‑1 (MQ=255)

                                                                                                                      gTACTACGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTtct                >  2:1776823/1‑140 (MQ=255)

                                                                                                                          tacGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTa            <  1:1342466/140‑1 (MQ=255)

                                                                                                                          tacGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTa            <  1:822534/140‑1 (MQ=255)

                                                                                                                          tacGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTa            <  2:1374894/140‑1 (MQ=255)

                                                                                                                            cGGCATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTACg          >  2:967055/1‑140 (MQ=255)

                                                                                                                               cATCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTACGGTg       <  2:1724440/140‑1 (MQ=255)

                                                                                                                               aaTCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTACGGTg       <  2:765050/139‑1 (MQ=255)

                                                                                                                                 tCACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTACGGTGCg     >  2:1045910/1‑140 (MQ=255)

                                                                                                                                  cACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTACGGTGCgg    <  1:2008282/140‑1 (MQ=255)

                                                                                                                                  cACTGCTTGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTACGGTGCgg    <  2:492412/140‑1 (MQ=255)

                                                                                                                                    ctgcttGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTACGGTGCGGGt  >  2:612615/1‑140 (MQ=255)

GCGGTTTCAACCTGAAATACCGCTATGAAGAAGACAACAGCCCGCTGGGTGTGATCGGTTCTTTCACTTACACCGAGAAAAGCCGTACTGCAAGCTCTGGTGACTACAACAAAAACCAGTACTACGGCATCACTGCTGGTCCGGCTTACCGCATTAACGACTGGGCAAGCATCTACGGTGTAGTGGGTGTGGGTTATGGTAAATTCCAGACCACTGAATACCCGACCTACAAACACGACACCAGCGACTACGGTTTCTCCTACGGTGCGGGT  >  NC_000913/850583‑850854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A