Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 958,963 G→T R51L (CGC→CTC)  aroA → 3‑phosphoshikimate 1‑carboxyvinyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913958,9630GT100.0% 273.6 / NA 80R51L (CGC→CTC) aroA3‑phosphoshikimate 1‑carboxyvinyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (43/37);  total (43/37)

TACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCGCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCC  >  NC_000913/958828‑959096
                                                                                                                                       |                                                                                                                                     
tACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCat                                                                                                                                   >  2:2036673/1‑140 (MQ=255)
 aCAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGTCGGCATTAGCACACGGCAAAACAGGATTAACCAATCTGCTGGATAGCGATGACGTGCTCCata                                                                                                                                  >  2:872850/1‑140 (MQ=255)
   aaCCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATg                                                                                                                                <  2:1041741/140‑1 (MQ=255)
   aaCCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATg                                                                                                                                <  1:1232099/140‑1 (MQ=255)
       cATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGa                                                                                                                            >  2:1319027/1‑140 (MQ=255)
        aTCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGaa                                                                                                                           >  1:1365014/1‑140 (MQ=255)
        aTCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGaa                                                                                                                           <  2:401249/140‑1 (MQ=255)
        aTCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGaa                                                                                                                           <  1:1731080/140‑1 (MQ=255)
         tCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAATAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAAt                                                                                                                          >  2:296225/1‑140 (MQ=255)
          cGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGaa                                                                                                                           >  1:1694806/1‑138 (MQ=255)
          cGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATg                                                                                                                         >  2:1779593/1‑140 (MQ=255)
          cGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTACTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGaa                                                                                                                           <  2:1694806/138‑1 (MQ=255)
           gCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGc                                                                                                                        <  1:1142910/140‑1 (MQ=255)
            cTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGGCGTGCTCCATATGCTGAATGCa                                                                                                                       <  2:1462629/140‑1 (MQ=255)
            cTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGC‑AAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCAt                                                                                                                      >  1:1247590/1‑140 (MQ=255)
               gtgtCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTa                                                                                                                    >  2:1683496/1‑140 (MQ=255)
               gtgtCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTa                                                                                                                    >  2:168650/1‑140 (MQ=255)
                 gtCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAAc                                                                                                                  <  2:1794162/140‑1 (MQ=255)
                    gATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGc                                                                                                               >  1:933607/1‑140 (MQ=255)
                     aTGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGC‑AAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGt                                                                                                             <  2:1247590/140‑1 (MQ=255)
                      tGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGt                                                                                                             <  2:422028/140‑1 (MQ=255)
                      tGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGt                                                                                                             <  1:361928/140‑1 (MQ=255)
                      tGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGt                                                                                                             <  1:592524/140‑1 (MQ=255)
                       ggCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGtt                                                                                                            <  1:1779593/140‑1 (MQ=255)
                       ggCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGtt                                                                                                            <  1:1683496/140‑1 (MQ=255)
                           cTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAggg                                                                                                        >  2:1936789/1‑140 (MQ=255)
                             aTTAATTTGCCCGGTTCGAAGAGCAGTTCTATCCGCGGTTTATTGCTGGCGGCCATAGCACACCGTAAAACAGTATTTTCCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGt                                                                                                      <  2:1660510/140‑1 (MQ=255)
                                      cccGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGt                                                                                                      >  1:777480/1‑131 (MQ=255)
                                      cccGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGt                                                                                                      <  2:777480/131‑1 (MQ=255)
                                      cccGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATAc                                                                                             >  2:1844592/1‑140 (MQ=255)
                                      cccGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATAc                                                                                             >  1:852322/1‑140 (MQ=255)
                                      cccGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATAc                                                                                             >  1:1173830/1‑140 (MQ=255)
                                      cccGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATAc                                                                                             >  2:2010906/1‑140 (MQ=255)
                                      cccGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATAc                                                                                             >  2:1458856/1‑140 (MQ=255)
                                      cccGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCACATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATAc                                                                                             >  1:1679450/1‑140 (MQ=255)
                                      cccGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTACCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATAc                                                                                             >  1:514735/1‑140 (MQ=255)
                                        cGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGc                                                                                           >  1:1258255/1‑140 (MQ=255)
                                           ttCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCttt                                                                                        >  2:1849067/1‑140 (MQ=255)
                                           ttCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCttt                                                                                        >  2:2048779/1‑140 (MQ=255)
                                              cAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAg                                                                                     <  2:1365014/140‑1 (MQ=255)
                                               aaGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGc                                                                                    <  1:432282/140‑1 (MQ=255)
                                               aaGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGc                                                                                    <  1:1936789/140‑1 (MQ=255)
                                               aaGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGc                                                                                    <  1:1849067/140‑1 (MQ=255)
                                                agagCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGcc                                                                                   <  2:1173830/140‑1 (MQ=255)
                                                     gTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCg                                                                              >  1:1162265/1‑140 (MQ=255)
                                                     gTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCg                                                                              >  2:1551895/1‑140 (MQ=255)
                                                         cTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTAcg                                                                          <  2:1983241/140‑1 (MQ=255)
                                                               gcgcTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGc                                                                    >  1:439847/1‑140 (MQ=255)
                                                                cgcTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTTAGCCGATCGTACGCGTTGCg                                                                   >  2:1449813/1‑140 (MQ=255)
                                                                 gcTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGa                                                                  >  1:1112558/1‑140 (MQ=255)
                                                                           tGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGt                                                        >  1:1378950/1‑140 (MQ=255)
                                                                            ggcggcATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTa                                                       >  1:721790/1‑140 (MQ=255)
                                                                             gcggcATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTaa                                                      >  2:1692235/1‑140 (MQ=255)
                                                                             gcggcATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTaa                                                      >  2:2121032/1‑140 (MQ=255)
                                                                               ggcATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAAcg                                                    <  1:252429/140‑1 (MQ=255)
                                                                                gcATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAAcgg                                                   <  1:1319027/140‑1 (MQ=255)
                                                                                gcATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAAcgg                                                   <  1:2010906/140‑1 (MQ=255)
                                                                                  aTTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAAcggcg                                                 <  1:2121032/140‑1 (MQ=255)
                                                                                    tAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGt                                               <  2:439847/140‑1 (MQ=255)
                                                                                    tAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGt                                               <  2:1162265/140‑1 (MQ=255)
                                                                                       cacaCGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTcct                                            >  2:51409/1‑139 (MQ=255)
                                                                                          acGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTa                                         <  2:1505172/140‑1 (MQ=255)
                                                                                          acGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTa                                         <  2:1679450/140‑1 (MQ=255)
                                                                                          acGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTa                                         <  2:1450616/140‑1 (MQ=255)
                                                                                           cGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTac                                        >  2:1330658/1‑140 (MQ=255)
                                                                                                    aGTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAg                               <  2:1784352/140‑1 (MQ=255)
                                                                                                     gTATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAgg                              <  2:514863/140‑1 (MQ=255)
                                                                                                      tATTAACCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGt                             >  1:634550/1‑140 (MQ=255)
                                                                                                          aaCCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGccc                         <  2:721790/140‑1 (MQ=255)
                                                                                                           aCCAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCt                        >  1:1836356/1‑140 (MQ=255)
                                                                                                            ccAATCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTg                       <  2:481439/140‑1 (MQ=255)
                                                                                                                tCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCCTTACACGCAGAAGGTGCCCTGGAgt                   >  2:561026/1‑140 (MQ=255)
                                                                                                                tCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAgt                   >  2:2068957/1‑140 (MQ=255)
                                                                                                                tCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAgt                   >  1:199777/1‑140 (MQ=255)
                                                                                                                tCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAgt                   >  2:174575/1‑140 (MQ=255)
                                                                                                                tCTGCTGGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGACCATTACACGCAGAAGGTGGCCCGGAgt                   >  2:2015685/1‑140 (MQ=255)
                                                                                                                  tgctgGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAgttg                 <  2:1378950/140‑1 (MQ=255)
                                                                                                                  tgctgGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAgttg                 <  2:1112558/140‑1 (MQ=255)
                                                                                                                    gtgGATAGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAgttgtt               >  1:918470/2‑140 (MQ=255)
                                                                                                                          aGCGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGGCCTGGAGTTGTTTCTCgg         >  2:1592982/1‑140 (MQ=255)
                                                                                                                           acGATGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGt        <  2:199777/139‑1 (MQ=255)
                                                                                                                              aTGACGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTCCACCCAGAAGGGGTCCCGGAGTTGTTCCTCGGTAAc     >  1:1017199/1‑140 (MQ=255)
                                                                                                                                 aCGTGCTCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGcc  >  1:1180225/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                     
TACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGGCAAAACAGTATTAACCAATCTGCTGGATAGCGATGACGTGCGCCATATGCTGAATGCATTAACAGCGTTAGGGGTAAGCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCC  >  NC_000913/958828‑959096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A