Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	959,135	G→T	L108L (CTG→CTT)	aroA →	3‑phosphoshikimate 1‑carboxyvinyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	959,135	0	G	T	98.8%	261.7 / ‑2.9	80	L108L (CTG→CTT)	aroA	3‑phosphoshikimate 1‑carboxyvinyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (31/48); total (31/49)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01

GCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTGGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGAACAAGAAAATTATCCGCCGTTG  >  NC_000913/958999‑959264

gCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGt                                                                                                                                <  2:918470/140‑1 (MQ=255)

gCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGt                                                                                                                                <  1:1330658/140‑1 (MQ=255)

gCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGt                                                                                                                                <  1:1501279/140‑1 (MQ=255)

gCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGGGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGt                                                                                                                                >  1:912317/1‑140 (MQ=255)

acTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGt                                                                                                                                <  1:674619/139‑1 (MQ=255)

  tataCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAg                                                                                                                              <  1:168650/140‑1 (MQ=255)

  tataCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAg                                                                                                                              <  1:872850/140‑1 (MQ=255)

  tataCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAg                                                                                                                              <  1:2068957/140‑1 (MQ=255)

    taCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCa                                                                                                                            >  1:1401988/1‑140 (MQ=255)

    taCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCa                                                                                                                            >  1:205999/1‑140 (MQ=255)

     aCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCaa                                                                                                                           <  1:1017439/140‑1 (MQ=255)

     aCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCaa                                                                                                                           <  1:174575/140‑1 (MQ=255)

     aCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCaa                                                                                                                           <  1:2048779/140‑1 (MQ=255)

     aCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCaa                                                                                                                           >  1:330183/1‑140 (MQ=255)

     aCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCaa                                                                                                                           <  2:32085/140‑1 (MQ=255)

     aCGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCaa                                                                                                                           <  2:443583/140‑1 (MQ=255)

          ttCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGata                                                                                                                      <  1:430218/140‑1 (MQ=255)

          ttCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGata                                                                                                                      <  1:1758836/140‑1 (MQ=255)

           tCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGGGCCCTGGAGTTTTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTGGGGAGCAATGatat                                                                                                                     >  1:1471104/1‑140 (MQ=255)

            cAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATAtt                                                                                                                    >  1:1036214/1‑140 (MQ=255)

               ccGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATtgtg                                                                                                                 <  1:666084/140‑1 (MQ=255)

                 gATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCt                                                                                                               <  2:2059275/140‑1 (MQ=255)

                   tCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGa                                                                                                             >  1:1351334/1‑140 (MQ=255)

                   tCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGa                                                                                                             <  1:296225/140‑1 (MQ=255)

                           gTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAg                                                                                                     <  1:1576308/140‑1 (MQ=255)

                           gTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAg                                                                                                     <  1:51409/140‑1 (MQ=255)

                           gTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAg                                                                                                     <  2:1401988/140‑1 (MQ=255)

                           gTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAg                                                                                                     <  2:189883/140‑1 (MQ=255)

                             tGCGAAATTATCGGTAACGGCGGTTCCTTAAACGCAGAAGGTGCCCTGGAGTTGTTTCTCGGTAACGACGGAACGGCAATGCGTACGCTGGCGGCAGCTCTTTTTCTTGGTAGCAATGATATTGTGCTGACCGGTGGGcc                                                                                                   >  2:397767/1‑140 (MQ=255)

                             tGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGcc                                                                                                   >  1:1562500/1‑140 (MQ=255)

                             tGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGcc                                                                                                   >  1:958682/1‑140 (MQ=255)

                             tGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGcc                                                                                                   >  1:1968974/1‑140 (MQ=255)

                             tGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGcc                                                                                                   <  2:205999/140‑1 (MQ=255)

                             tGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGcc                                                                                                   >  2:271326/1‑140 (MQ=255)

                             tGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGGGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGcc                                                                                                   >  1:1489036/1‑140 (MQ=255)

                                         ggTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGa                                                                                       <  1:428422/140‑1 (MQ=255)

                                            aaCGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACg                                                                                    <  2:330183/140‑1 (MQ=255)

                                                  ggTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGAt                                                                              <  2:1562500/140‑1 (MQ=255)

                                                  ggTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGAt                                                                              <  2:1036214/140‑1 (MQ=255)

                                                  ggTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGAt                                                                              <  2:852322/140‑1 (MQ=255)

                                                    tCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTg                                                                            <  1:271326/140‑1 (MQ=255)

                                                     ccATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTgg                                                                           <  1:1528884/140‑1 (MQ=255)

                                                      cATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGt                                                                          <  2:958682/140‑1 (MQ=255)

                                                       aTTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTc                                                                         <  1:1551895/140‑1 (MQ=255)

                                                              gCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCtggt                                                                  >  1:683071/1‑140 (MQ=255)

                                                              gCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCtggt                                                                  >  1:1095630/1‑140 (MQ=255)

                                                                aGAAGGTGTCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCtggtgg                                                                >  1:513703/1‑140 (MQ=255)

                                                                aGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCtggtgg                                                                >  1:253457/1‑140 (MQ=255)

                                                                  aaGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAt                                                              >  1:1280948/1‑140 (MQ=255)

                                                                  aaGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAt                                                              >  2:735897/1‑140 (MQ=255)

                                                                     gTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcg                                                           <  1:735897/140‑1 (MQ=255)

                                                                     gTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcg                                                           <  2:1968974/140‑1 (MQ=255)

                                                                     gTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcg                                                           <  2:933607/140‑1 (MQ=255)

                                                                      tGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCTCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGTtgcgt                                                          >  2:1392381/1‑139 (MQ=255)

                                                                      tGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcgc                                                          <  1:1692235/140‑1 (MQ=255)

                                                                      tGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcgc                                                          <  2:253457/140‑1 (MQ=255)

                                                                        cccTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcgctg                                                        >  1:1326430/1‑140 (MQ=255)

                                                                        cccTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcgctg                                                        >  1:1063564/1‑140 (MQ=255)

                                                                        cccTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcgctg                                                        >  2:943593/1‑140 (MQ=255)

                                                                        cccTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcgctg                                                        >  2:2088267/1‑140 (MQ=255)

                                                                          cTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGAtgcgctgcg                                                      >  2:1780186/1‑140 (MQ=255)

                                                                             gAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCt                                                   >  2:371716/1‑140 (MQ=255)

                                                                                ttgttCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTggg                                                <  2:1258255/140‑1 (MQ=255)

                                                                                  gttCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTgggcg                                              >  2:1352643/1‑140 (MQ=255)

                                                                                  gttCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTgggcg                                              >  1:314549/1‑140 (MQ=255)

                                                                                       tCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTgggcggggcg                                         <  2:1017199/140‑1 (MQ=255)

                                                                                         ggTAACGCCTGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGaa                                       >  2:1924072/1‑140 (MQ=255)

                                                                                         ggTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGaa                                       <  1:1701308/140‑1 (MQ=255)

                                                                                         ggTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGaa                                       <  1:561026/140‑1 (MQ=255)

                                                                                            aaCGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGAt                                    <  1:1449813/140‑1 (MQ=255)

                                                                                              cGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCa                                  >  1:589009/1‑140 (MQ=255)

                                                                                              cGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCa                                  >  1:963112/1‑140 (MQ=255)

                                                                                               gCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCAc                                 <  2:1351334/140‑1 (MQ=255)

                                                                                                    aaCGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTAcc                            <  1:513676/140‑1 (MQ=255)

                                                                                                    aaCGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTAcc                            >  2:289273/1‑140 (MQ=255)

                                                                                                         cAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGaa                       <  1:289273/140‑1 (MQ=255)

                                                                                                         cAATGCGTCCGCTGGCGGCAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGaa                       >  1:876847/1‑140 (MQ=255)

                                                                                                                         ggcAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGAACAAGAAAATTATccgc       >  2:1991758/1‑140 (MQ=255)

                                                                                                                          gcAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGAACAAGAAAATTATccgcc      <  2:518134/140‑1 (MQ=255)

                                                                                                                          gcAGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGAACAAGAAAATTATccgcc      <  1:1924072/140‑1 (MQ=255)

                                                                                                                            aGCTCTTTGTCTTGGTAGCAGTGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGAACAAGAAAATTTTCCGCCGt    <  1:371716/140‑1 (MQ=255)

                                                                                                                            aGCTCTTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGAACAAGAAAATTATCCGCCGt    <  2:1095630/140‑1 (MQ=255)

                                                                                                                            aGCTCTTTGTCTGGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCATTTACCTGAAACAAGAAAATTATCCGCCGt    <  2:1471104/140‑1 (MQ=255)

                                                                                                                              ctctTTGTCTTGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGAACAAGAAAATTATCCGCCGTTg  >  1:78648/1‑140 (MQ=255)

GCTATACGCTTTCAGCCGATCGTACGCGTTGCGAAATTATCGGTAACGGCGGTCCATTACACGCAGAAGGTGCCCTGGAGTTGTTCCTCGGTAACGCCGGAACGGCAATGCGTCCGCTGGCGGCAGCTCTTTGTCTGGGTAGCAATGATATTGTGCTGACCGGTGAGCCGCGTATGAAAGAACGCCCGATTGGTCATCTGGTGGATGCGCTGCGCCTGGGCGGGGCGAAGATCACTTACCTGGAACAAGAAAATTATCCGCCGTTG  >  NC_000913/958999‑959264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A