Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 960,051 C→A P414T (CCG→ACG)  aroA → 3‑phosphoshikimate 1‑carboxyvinyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913960,0510CA100.0% 603.1 / NA 172P414T (CCG→ACG) aroA3‑phosphoshikimate 1‑carboxyvinyltransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (107/65);  total (107/65)

Only 100 of 174 total aligned reads displayed.

ACTCCTCCGGAAAAACTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGA  >  NC_000913/959916‑960187
                                                                                                                                       |                                                                                                                                        
aCTCCTCCGGAAAAACTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGa                                                                                                                                      >  1:1599451/1‑140 (MQ=255)
aCTCCTCCGGAAAAACTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGa                                                                                                                                      >  2:1586475/1‑140 (MQ=255)
     tccGGAAAAACTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGattatt                                                                                                                                 >  2:1114651/1‑140 (MQ=255)
      ccGGAAAAACTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTAttt                                                                                                                                >  1:227974/1‑140 (MQ=255)
       cGGAAAAACTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTc                                                                                                                               >  2:1051677/1‑140 (MQ=255)
        ggAAAAACTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCg                                                                                                                              <  1:1825735/140‑1 (MQ=255)
         gAAAAACTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGa                                                                                                                             >  1:1285783/1‑140 (MQ=255)
             aaCTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGagcag                                                                                                                         <  1:1051677/140‑1 (MQ=255)
              aCTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGagcagt                                                                                                                        >  2:1305475/1‑139 (MQ=255)
              aCTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGagcagc                                                                                                                        <  2:1419407/140‑1 (MQ=255)
                  aaCTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGgc                                                                                                                    <  1:2065296/140‑1 (MQ=255)
                  aaCTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGgc                                                                                                                    <  2:977445/140‑1 (MQ=255)
                  aaCTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGgc                                                                                                                    <  2:705892/140‑1 (MQ=255)
                   aCTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGgcg                                                                                                                   <  1:153633/140‑1 (MQ=255)
                                cgcgACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAgg                                                                                                      <  2:1353113/140‑1 (MQ=255)
                                   gACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAg                                                                                                   <  2:101747/140‑1 (MQ=255)
                                     aaTACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGcc                                                                                                 <  2:633988/139‑1 (MQ=255)
                                        aCAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCtga                                                                                              >  2:1818298/1‑140 (MQ=255)
                                        aCAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCtga                                                                                              >  1:2099768/1‑140 (MQ=255)
                                            tGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCtgaatga                                                                                          >  2:1656821/1‑140 (MQ=255)
                                              aTCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaac                                                                                        >  2:1269782/1‑140 (MQ=255)
                                               tCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaaca                                                                                       >  1:62751/1‑140 (MQ=255)
                                                cACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaa                                                                                      >  1:537514/1‑140 (MQ=255)
                                                cACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaa                                                                                      <  1:2080621/140‑1 (MQ=255)
                                                cACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaa                                                                                      <  1:1438288/140‑1 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGTCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaaca                                                                                       <  1:1548947/138‑1 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGTCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaaca                                                                                       >  2:1548947/1‑138 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaac                                                                                     >  2:2046912/1‑140 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaac                                                                                     >  2:1040885/1‑140 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaac                                                                                     <  1:953518/140‑1 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaac                                                                                     <  2:1474033/140‑1 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaac                                                                                     >  2:1901808/1‑140 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaac                                                                                     >  2:995603/1‑140 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaac                                                                                     >  2:168937/1‑140 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaac                                                                                     <  1:1071626/140‑1 (MQ=255)
                                                 aCCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGaacaac                                                                                     >  1:1407299/1‑140 (MQ=255)
                                                   cGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACgg                                                                                   >  1:580555/1‑140 (MQ=255)
                                                   cGGATGGCGATGTGTTTCACGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGTCGCGGATTAGCCAGGCAGCCTGAATGAACAACgg                                                                                   >  1:446139/1‑140 (MQ=255)
                                                    ggATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACggg                                                                                  >  2:1325638/1‑140 (MQ=255)
                                                    ggATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACggg                                                                                  >  1:608095/1‑140 (MQ=255)
                                                      aTGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCa                                                                                >  1:137362/1‑140 (MQ=255)
                                                      aTGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCa                                                                                >  2:482602/1‑140 (MQ=255)
                                                      aTGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCa                                                                                >  1:1692103/1‑140 (MQ=255)
                                                      aTGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCa                                                                                >  2:93800/1‑140 (MQ=255)
                                                        ggCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCaat                                                                              >  2:627818/1‑140 (MQ=255)
                                                          cGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCaataa                                                                            <  1:2046912/140‑1 (MQ=255)
                                                          cGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCaataa                                                                            <  1:734524/140‑1 (MQ=255)
                                                          cGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCaataa                                                                            <  1:843250/140‑1 (MQ=255)
                                                             tgtgTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCaataaata                                                                         >  1:1926766/1‑140 (MQ=255)
                                                              gtgtTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAg                                                                        <  2:137362/140‑1 (MQ=255)
                                                              gtgtTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAg                                                                        <  2:348529/140‑1 (MQ=255)
                                                               tgtTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGc                                                                       <  1:1325638/140‑1 (MQ=255)
                                                               tgtTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGc                                                                       <  2:608095/140‑1 (MQ=255)
                                                                 tttCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCa                                                                     <  2:1157687/140‑1 (MQ=255)
                                                                  ttCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCaa                                                                    >  2:554715/1‑140 (MQ=255)
                                                                    ctcGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAAt                                                                  >  2:1088830/1‑140 (MQ=255)
                                                                       gCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAAtctt                                                               >  2:1018492/1‑140 (MQ=255)
                                                                           gtggCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAAtctttctt                                                           >  1:1017020/1‑140 (MQ=255)
                                                                           gtggCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAAtctttctt                                                           <  1:859756/140‑1 (MQ=255)
                                                                           gtggCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAAtctttctt                                                           >  2:1938359/1‑140 (MQ=255)
                                                                                 ttGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCaa                                                     >  2:808960/1‑140 (MQ=255)
                                                                                 ttGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCaa                                                     >  1:898164/1‑140 (MQ=255)
                                                                                 ttGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCaa                                                     <  2:2140203/140‑1 (MQ=255)
                                                                                     cAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACg                                                 <  1:93800/140‑1 (MQ=255)
                                                                                     cAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACg                                                 <  2:1465367/140‑1 (MQ=255)
                                                                                       gATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTc                                               <  2:1769909/140‑1 (MQ=255)
                                                                                           cacCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGca                                           <  1:837813/140‑1 (MQ=255)
                                                                                            acCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGACGGcac                                          >  1:842896/1‑140 (MQ=255)
                                                                                                gTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTg                                      >  1:634322/1‑140 (MQ=255)
                                                                                                gTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCATTATCAAAACGTCGGCACATTg                                      >  1:1800851/1‑140 (MQ=255)
                                                                                                  gACGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTc                                    >  2:932632/1‑140 (MQ=255)
                                                                                                   aCGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCg                                   >  1:1120725/1‑140 (MQ=255)
                                                                                                   aCGATTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCg                                   >  1:1469337/1‑140 (MQ=255)
                                                                                                      aTTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCg                                >  1:1223957/1‑140 (MQ=255)
                                                                                                      aTTCTTGATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCg                                >  1:1856784/1‑140 (MQ=255)
                                                                                                            gATCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttt                          >  1:591893/1‑140 (MQ=255)
                                                                                                             aTCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGttttttt                         >  1:1762875/1‑140 (MQ=255)
                                                                                                              tCCCAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttttt                        <  2:62751/140‑1 (MQ=255)
                                                                                                                ccAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCg                      <  1:1114651/140‑1 (MQ=255)
                                                                                                                 cAAATGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCgg                     <  1:1279265/140‑1 (MQ=255)
                                                                                                                  aaaTGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGa                    >  2:1586533/1‑140 (MQ=255)
                                                                                                                  aaaTGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGa                    <  2:537514/140‑1 (MQ=255)
                                                                                                                  aaaTGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGa                    <  2:892523/140‑1 (MQ=255)
                                                                                                                  aaaTGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGa                    >  1:680877/1‑140 (MQ=255)
                                                                                                                   aaTGCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGAc                   >  1:277476/1‑140 (MQ=255)
                                                                                                                      gCACGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCtt                <  2:822919/140‑1 (MQ=255)
                                                                                                                        aCGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTtgt              <  2:773671/140‑1 (MQ=255)
                                                                                                                         cGGCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTtgtg             >  2:1901539/1‑140 (MQ=255)
                                                                                                                           gCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAg           <  2:287817/140‑1 (MQ=255)
                                                                                                                           gCCAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAg           <  1:1901808/140‑1 (MQ=255)
                                                                                                                            ccAAAACATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGt          >  2:1800755/1‑140 (MQ=255)
                                                                                                                              aaaaCATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCa        <  2:2110205/140‑1 (MQ=255)
                                                                                                                               aaaCATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCAt       >  1:974598/1‑140 (MQ=255)
                                                                                                                               aaaCATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCAt       >  1:1962802/1‑140 (MQ=255)
                                                                                                                               aaaCATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCAt       >  1:1982161/1‑140 (MQ=255)
                                                                                                                               aaaCATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCAt       >  1:395353/1‑140 (MQ=255)
                                                                                                                               aaaCATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCAt       >  1:1187593/1‑140 (MQ=255)
                                                                                                                               aaaCATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCAt       <  1:1418345/140‑1 (MQ=255)
                                                                                                                                 aCATTTACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCAttt     <  1:1766368/140‑1 (MQ=255)
                                                                                                                                    tttACGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGa  <  1:412940/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
ACTCCTCCGGAAAAACTGAACTTTGCCGAGATCGCGACATACAATGATCACCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGA  >  NC_000913/959916‑960187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A