Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	982,472	G→T	A476S (GCC→TCC)	ldtD →	L,D‑transpeptidase LdtD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	982,472	0	G	T	99.1%	383.0 / ‑4.2	117	A476S (GCC→TCC)	ldtD	L,D‑transpeptidase LdtD
Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (63/52); total (64/53)
Fisher's exact test for biased strand distribution p-value = 4.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

Only 100 of 118 total aligned reads displayed.

TCTGGCACGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAGCGTGAT  >  NC_000913/982336‑982606

tctGGCACGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCt                                                                                                                                     >  2:1745257/1‑140 (MQ=255)

tctGGCACGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCt                                                                                                                                     <  1:1651098/140‑1 (MQ=255)

  tGGCACGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCg                                                                                                                                   >  2:533098/1‑140 (MQ=255)

  tGGCACGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCg                                                                                                                                   >  2:1257345/1‑140 (MQ=255)

             aatatTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGtt                                                                                                                        <  2:1726350/139‑1 (MQ=255)

                  tgtGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCt                                                                                                                   >  1:352423/3‑140 (MQ=255)

                    tGCCAAAAGTGTGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTc                                                                                                                 >  2:497419/1‑140 (MQ=255)

                    tGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTc                                                                                                                 >  2:360121/1‑140 (MQ=255)

                    tGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTc                                                                                                                 >  2:13226/1‑140 (MQ=255)

                    tGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTc                                                                                                                 >  2:1097895/1‑140 (MQ=255)

                      ccAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCca                                                                                                               >  2:547650/1‑140 (MQ=255)

                        aaaaGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCcagc                                                                                                             >  2:56080/1‑140 (MQ=255)

                        aaaaGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCcagc                                                                                                             >  1:1771/1‑140 (MQ=255)

                         aaaGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCcagca                                                                                                            <  1:1257345/140‑1 (MQ=255)

                         aaaGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCcagca                                                                                                            <  2:878200/140‑1 (MQ=255)

                         aaaGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCcagca                                                                                                            <  2:1338312/140‑1 (MQ=255)

                                gcAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCa                                                                                                     >  1:966017/1‑140 (MQ=255)

                                 gacagATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAg                                                                                                    >  1:806534/5‑140 (MQ=255)

                                  aaCGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAgg                                                                                                   <  1:1035399/140‑1 (MQ=255)

                                   aCGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGc                                                                                                  <  1:2027607/140‑1 (MQ=255)

                                      aTCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCa                                                                                               <  1:1995851/140‑1 (MQ=255)

                                      aTCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCa                                                                                               <  2:73468/140‑1 (MQ=255)

                                            gATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAAc                                                                                         <  2:2110056/140‑1 (MQ=255)

                                             atatCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGAATGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACt                                                                                        <  2:12092/140‑1 (MQ=255)

                                              tatCTCGAAAGCCATGGCTATACGGTGATGTGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTc                                                                                       >  2:1034932/1‑140 (MQ=255)

                                              tatCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTc                                                                                       >  1:1937024/1‑140 (MQ=255)

                                              tatCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTc                                                                                       >  1:1610575/1‑140 (MQ=255)

                                                tctcGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGc                                                                                     >  2:1095637/1‑140 (MQ=255)

                                                 ctcGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCt                                                                                    >  2:1509867/1‑140 (MQ=255)

                                                 ctcGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCt                                                                                    >  1:706988/1‑140 (MQ=255)

                                                 ctcGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCt                                                                                    >  2:1735357/1‑140 (MQ=255)

                                                 ctcGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCt                                                                                    >  1:2050062/1‑140 (MQ=255)

                                                  tcGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCACCAGGCTCCAGGCCCACGGAACTCGCTg                                                                                   <  1:1745257/140‑1 (MQ=255)

                                                      aaGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGgc                                                                               <  1:533098/140‑1 (MQ=255)

                                                      aaGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGgc                                                                               <  1:547650/140‑1 (MQ=255)

                                                      aaGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGgc                                                                               <  2:1771/140‑1 (MQ=255)

                                                      aaGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGgc                                                                               <  2:352423/140‑1 (MQ=255)

                                                         ccATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCt                                                                            <  2:825331/140‑1 (MQ=255)

                                                         ccATGGCTATACGGTGATGCGCGACTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCt                                                                            <  2:1262720/140‑1 (MQ=255)

                                                          cATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCGCGGAACTCGCTGGGGCGCta                                                                           >  1:890438/1‑140 (MQ=255)

                                                          cATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCta                                                                           >  1:1724097/1‑140 (MQ=255)

                                                          cATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCta                                                                           >  1:1164520/1‑140 (MQ=255)

                                                           aTGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCtat                                                                          >  2:739987/1‑140 (MQ=255)

                                                            tGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCtata                                                                         >  2:936473/1‑140 (MQ=255)

                                                                  taCGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCa                                                                   >  1:583228/1‑140 (MQ=255)

                                                                   aCGGTGATGCGCGGCTGGAACA‑CAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAat                                                                 <  1:539212/140‑1 (MQ=255)

                                                                    cGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAat                                                                 <  1:1973973/140‑1 (MQ=255)

                                                                    cGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAAATCAat                                                                 <  2:1937024/140‑1 (MQ=255)

                                                                      gTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAatat                                                               <  2:806534/140‑1 (MQ=255)

                                                                       tGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAatatt                                                              >  2:1639737/1‑139 (MQ=255)

                                                                       tGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAatatt                                                              >  2:321111/1‑139 (MQ=255)

                                                                       tGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAatatt                                                              >  2:1805043/1‑139 (MQ=255)

                                                                       tGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAatatt                                                              >  2:1131458/1‑139 (MQ=255)

                                                                       tGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATg                                                              >  1:1059332/1‑140 (MQ=255)

                                                                       tGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATg                                                              >  2:741434/1‑140 (MQ=255)

                                                                        gATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGc                                                             >  2:1862291/1‑140 (MQ=255)

                                                                        gATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGc                                                             >  2:1433038/1‑140 (MQ=255)

                                                                         aTGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTCCCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGcc                                                            <  2:1394566/140‑1 (MQ=255)

                                                                         aTGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGcc                                                            >  1:266350/1‑140 (MQ=255)

                                                                          tGCGCGGCTGAAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCg                                                           >  1:2128434/1‑140 (MQ=255)

                                                                            cgcgGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAg                                                         >  2:2112714/1‑140 (MQ=255)

                                                                            cgcgGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAg                                                         >  1:746751/1‑140 (MQ=255)

                                                                              cgGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGtt                                                       >  1:105056/1‑140 (MQ=255)

                                                                                gCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCa                                                     <  2:266350/140‑1 (MQ=255)

                                                                                 cTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCag                                                    <  2:1164520/140‑1 (MQ=255)

                                                                                  tGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCaga                                                   <  1:360121/140‑1 (MQ=255)

                                                                                  tGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCaga                                                   <  2:1854113/140‑1 (MQ=255)

                                                                                      aCAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGcc                                               <  1:1433038/140‑1 (MQ=255)

                                                                                       cagcagAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCa                                              <  1:741434/140‑1 (MQ=255)

                                                                                                  cGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCAt                                   >  2:348726/1‑140 (MQ=255)

                                                                                                    aTTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGa                                 >  2:252010/1‑140 (MQ=255)

                                                                                                    aTTGACCCATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGa                                 >  2:2031263/1‑140 (MQ=255)

                                                                                                         cccATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGc                            <  2:1841285/140‑1 (MQ=255)

                                                                                                          ccATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGcc                           <  2:966017/140‑1 (MQ=255)

                                                                                                          ccATGGCAGGTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGcc                           <  1:321111/140‑1 (MQ=255)

                                                                                                                  ggTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACcaca                   <  2:2128434/140‑1 (MQ=255)

                                                                                                                  ggTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACcaca                   >  1:813004/1‑140 (MQ=255)

                                                                                                                   gctGACTGGTCTACAATCACGACCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACaa                  >  2:1314786/3‑140 (MQ=255)

                                                                                                                   gTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACaa                  >  1:1351942/1‑140 (MQ=255)

                                                                                                                   gTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACaa                  >  2:1352944/1‑140 (MQ=255)

                                                                                                                   gTTGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACaa                  >  1:784952/1‑140 (MQ=255)

                                                                                                                    ttGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAAt                 <  2:2140234/140‑1 (MQ=255)

                                                                                                                    ttGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAAt                 <  1:1804533/140‑1 (MQ=255)

                                                                                                                    ttGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAAt                 >  1:1017340/1‑140 (MQ=255)

                                                                                                                    ttGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAAt                 <  1:1034932/140‑1 (MQ=255)

                                                                                                                    ttGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAAt                 <  1:252010/140‑1 (MQ=255)

                                                                                                                    ttGACTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTACAGGCCCACGGATCTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAAt                 <  2:582284/140‑1 (MQ=255)

                                                                                                                       aCTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGcc                           >  1:840995/1‑127 (MQ=255)

                                                                                                                       aCTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGcc                           <  2:840995/127‑1 (MQ=255)

                                                                                                                       aCTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCtt              >  2:913960/1‑139 (MQ=255)

                                                                                                                        cTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGt             >  2:14022/1‑140 (MQ=255)

                                                                                                                        cTGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGt             <  2:1983959/140‑1 (MQ=255)

                                                                                                                         tGGTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCTAACCACAATCTGtt            <  1:936473/140‑1 (MQ=255)

                                                                                                                          ggTCTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGCGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTc           <  1:1509867/140‑1 (MQ=255)

                                                                                                                             cTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAg        <  2:1724097/140‑1 (MQ=255)

                                                                                                                             cTACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAg        <  1:877612/140‑1 (MQ=255)

                                                                                                                              tACAATCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAGc       >  1:449608/1‑140 (MQ=255)

                                                                                                                                aaaTCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCGCGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAGCGt     <  2:890438/139‑1 (MQ=255)

                                                                                                                                 aaTCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAGCGTg    >  1:1136864/1‑140 (MQ=255)

                                                                                                                                   tCACGTCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAGCGTGAt  >  1:854532/1‑140 (MQ=255)

TCTGGCACGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAGCGTGAT  >  NC_000913/982336‑982606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A