Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	990,842	G→T	W74L (TGG→TTG)	pepN →	aminopeptidase N

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	990,842	0	G	T	100.0%	344.6 / NA	99	W74L (TGG→TTG)	pepN	aminopeptidase N
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (49/50); total (49/50)

Only 100 of 101 total aligned reads displayed.

GACGCGCAAAAGACGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTGGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCACCCAG  >  NC_000913/990709‑990978

gACGCGCAAAAGACGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAaaga                                                                                                                                    >  2:1977010/1‑140 (MQ=255)

gACGCGCAAAAGACGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAaaga                                                                                                                                    >  1:642010/1‑140 (MQ=255)

gACGCGCAAAAGACGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAaaga                                                                                                                                    >  1:129889/1‑140 (MQ=255)

   gcgcAAAAGACGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAaagaaga                                                                                                                                 <  2:1037441/140‑1 (MQ=255)

    cgcAAAAGACGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAaagaagaa                                                                                                                                <  1:915005/140‑1 (MQ=255)

           gACGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGgcg                                                                                                                         <  1:139459/140‑1 (MQ=255)

           aaaggTCGTTAACATGGTCAGCCAAGCTATCCGCCATGGTGCATCAGATGGTCTCCTTGGTCTCAACGGCAAAGAGCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCATGGACCGCCTTGAAAGAAGAAGAggggg                                                                                                                         <  2:914943/137‑3 (MQ=255)

             cGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCa                                                                                                                       <  2:1301932/140‑1 (MQ=255)

             cGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCa                                                                                                                       <  1:829578/140‑1 (MQ=255)

             aggTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCa                                                                                                                       <  2:130179/139‑1 (MQ=255)

              ggTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCAc                                                                                                                      <  1:1034702/140‑1 (MQ=255)

                tCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTg                                                                                                                    <  1:590758/140‑1 (MQ=255)

                     aCCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTAt                                                                                                               >  2:1201257/1‑140 (MQ=255)

                              aGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAAttt                                                                                                      >  2:190209/1‑140 (MQ=255)

                               gCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCATTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCAGTGCATATTAATGATCGGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTg                                                                                                     <  2:890226/140‑1 (MQ=255)

                                    gCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGa                                                                                                <  1:1214716/140‑1 (MQ=255)

                                    gCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGa                                                                                                <  1:886535/140‑1 (MQ=255)

                                       gTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCg                                                                                             <  2:346624/140‑1 (MQ=255)

                                        tCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGt                                                                                            >  2:734976/1‑140 (MQ=255)

                                          cGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCGGTAATTTGCCGGAGCGttt                                                                                          <  1:1000254/140‑1 (MQ=255)

                                          cGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGttt                                                                                          >  2:783199/1‑140 (MQ=255)

                                           gTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGtttt                                                                                         <  2:1488623/140‑1 (MQ=255)

                                            tCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAACCTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTa                                                                                        <  1:631351/140‑1 (MQ=255)

                                            tCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTa                                                                                        <  2:1505443/140‑1 (MQ=255)

                                            tCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTa                                                                                        <  2:1177091/140‑1 (MQ=255)

                                            tCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTa                                                                                        <  2:675396/140‑1 (MQ=255)

                                              aTGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACg                                                                                      >  2:417939/1‑140 (MQ=255)

                                                 gTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCtt                                                                                   <  2:647954/140‑1 (MQ=255)

                                                  tGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTa                                                                                  >  1:1704309/1‑140 (MQ=255)

                                                   gCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTaa                                                                                 <  1:1959194/140‑1 (MQ=255)

                                                   gCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTaa                                                                                 <  1:783199/140‑1 (MQ=255)

                                                    cATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCACACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAg                                                                                >  2:734637/1‑140 (MQ=255)

                                                       cAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATc                                                                             <  2:1647262/140‑1 (MQ=255)

                                                        aGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCa                                                                            <  2:324886/140‑1 (MQ=255)

                                                         gATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCAt                                                                           >  1:14966/1‑140 (MQ=255)

                                                           tGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTa                                                                         <  1:470005/140‑1 (MQ=255)

                                                           tGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATCTGCCGGAGCGTTTTACGCTTAAGATCATTa                                                                         <  2:253630/140‑1 (MQ=255)

                                                            gCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTaa                                                                        >  1:168571/1‑140 (MQ=255)

                                                            gCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTaa                                                                        >  1:1063814/1‑140 (MQ=255)

                                                            gCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTaa                                                                        <  1:790449/140‑1 (MQ=255)

                                                            gCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTaa                                                                        >  2:1888876/1‑140 (MQ=255)

                                                               ccccTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGa                                                                     >  1:30622/1‑140 (MQ=255)

                                                                cccTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTCGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGaa                                                                    >  1:84578/1‑140 (MQ=255)

                                                                 ccTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGaaa                                                                   >  2:1412153/1‑140 (MQ=255)

                                                                    tCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATaa                                                                >  2:696665/1‑140 (MQ=255)

                                                                     cGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAg                                                               >  2:1760370/1‑140 (MQ=255)

                                                                        ctcAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGccc                                                            >  1:1792116/1‑140 (MQ=255)

                                                                        ctcAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGccc                                                            >  1:285806/1‑140 (MQ=255)

                                                                         tcAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCcg                                                           <  2:285806/140‑1 (MQ=255)

                                                                         tcAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCcg                                                           <  2:30622/140‑1 (MQ=255)

                                                                          cAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCcgg                                                          >  1:1370378/1‑140 (MQ=255)

                                                                              ggCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCggcggc                                                      >  1:1565190/1‑140 (MQ=255)

                                                                                cGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAGATAAGCCCGGCGGCGa                                                    >  1:250112/1‑140 (MQ=255)

                                                                                 gAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGaa                                                   >  1:378337/1‑140 (MQ=255)

                                                                                  aaGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAAt                                                  >  2:1298815/1‑140 (MQ=255)

                                                                                    gACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATAc                                                <  1:998389/140‑1 (MQ=255)

                                                                                        tCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACcgcg                                            <  2:168571/140‑1 (MQ=255)

                                                                                         cAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCgcgc                                           >  1:1619713/1‑140 (MQ=255)

                                                                                            aCTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTgt                                        >  2:673986/1‑139 (MQ=255)

                                                                                             cTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGa                                       <  1:1412153/140‑1 (MQ=255)

                                                                                             cTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGAACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGa                                       <  2:1619713/140‑1 (MQ=255)

                                                                                             atGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGa                                       <  2:642010/139‑1 (MQ=255)

                                                                                                 tttCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAggg                                   >  1:224310/1‑140 (MQ=255)

                                                                                                 tttCTGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAggg                                   >  1:969019/1‑140 (MQ=255)

                                                                                                 tgtCTGTTTATATTAATGATGAGCCGTGGAACGGCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGTGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATGCCGCGCTGGAAggg                                   <  2:52594/138‑1 (MQ=255)

                                                                                                     tGTTCATATTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCttt                               <  2:748487/140‑1 (MQ=255)

                                                                                                       ttCATATTAATGATGAGCCGTCGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTAt                             <  2:84578/140‑1 (MQ=255)

                                                                                                            atTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTAtcagtc                        <  2:14966/140‑1 (MQ=255)

                                                                                                            atTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTAtcagtc                        <  1:755196/140‑1 (MQ=255)

                                                                                                            atTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTAtcagtc                        <  1:1977010/140‑1 (MQ=255)

                                                                                                            atTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTAtcagtc                        >  1:1160684/1‑140 (MQ=255)

                                                                                                            atTAATGATGAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTAtcagtc                        >  1:2140047/1‑140 (MQ=255)

                                                                                                             attatgatgAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTAtcagtca                       >  2:1395148/4‑140 (MQ=255)

                                                                                                                atgatgAGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGc                    <  1:1662425/140‑1 (MQ=255)

                                                                                                                 tgatgaGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCg                   >  1:1626247/1‑140 (MQ=255)

                                                                                                                 tgatgaGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCg                   >  2:1010623/1‑140 (MQ=255)

                                                                                                                 tgatgaGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCg                   >  2:2040100/1‑140 (MQ=255)

                                                                                                                    tgaGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATg                >  2:1944167/1‑140 (MQ=255)

                                                                                                                    agaGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATg                <  2:1704309/139‑1 (MQ=255)

                                                                                                                     gaGCCGTGGACCGCCTTGAAAGAAGAAGAGGGTGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATgc               <  1:1010623/140‑1 (MQ=255)

                                                                                                                     gaGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATgc               <  2:1370378/140‑1 (MQ=255)

                                                                                                                     gaGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATgc               <  1:1201257/140‑1 (MQ=255)

                                                                                                                      aGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTAt                             >  2:862186/1‑125 (MQ=255)

                                                                                                                      aGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTAt                             <  1:862186/125‑1 (MQ=255)

                                                                                                                      aGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATgcg              >  2:1064156/1‑140 (MQ=255)

                                                                                                                      aGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATgcg              >  1:1545143/1‑140 (MQ=255)

                                                                                                                      aGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATgcg              >  2:806143/1‑140 (MQ=255)

                                                                                                                      aGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATgcg              >  1:418620/1‑140 (MQ=255)

                                                                                                                      aGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATgcg              >  2:1582027/1‑140 (MQ=255)

                                                                                                                      aGCCGTGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATgcg              >  1:670275/1‑140 (MQ=255)

                                                                                                                           tGGACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTg         >  1:273941/1‑140 (MQ=255)

                                                                                                                             gACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCa       <  2:1063814/140‑1 (MQ=255)

                                                                                                                             gACCGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCa       <  1:1988543/140‑1 (MQ=255)

                                                                                                                               ccGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAGATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCAcc     <  2:250112/140‑1 (MQ=255)

                                                                                                                               ccGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCAcc     <  1:1888876/140‑1 (MQ=255)

                                                                                                                                cGCCTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCAccc    >  1:1935270/1‑140 (MQ=255)

                                                                                                                                  ccTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCAcc     <  1:423261/137‑1 (MQ=255)

                                                                                                                                  ccTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCAcc     >  1:1026159/1‑137 (MQ=255)

                                                                                                                                  ccTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCAcc     <  2:1026159/137‑1 (MQ=255)

                                                                                                                                  ccTTGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCACCCAg  >  1:344574/1‑140 (MQ=255)

GACGCGCAAAAGACGGTCGTTACCGCGGTCAGCCAGGCTGTCCGTCATGGTGCATCAGATGCTCCCCTTCGTCTCAACGGCGAAGACCTCAAACTGGTTTCTGTTCATATTAATGATGAGCCGTGGACCGCCTGGAAAGAAGAAGAGGGCGCACTGGTTATCAGTAATTTGCCGGAGCGTTTTACGCTTAAGATCATTAATGAAATAAGCCCGGCGGCGAATACCGCGCTGGAAGGGCTTTATCAGTCAGGCGATGCGCTTTGCACCCAG  >  NC_000913/990709‑990978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A