Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,011,436	G→T	L491F (TTG→TTT)	uup →	ATP‑binding protein with possible role in replication

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,011,436	0	G	T	100.0%	470.9 / NA	135	L491F (TTG→TTT)	uup	ATP‑binding protein with possible role in replication
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (53/82); total (53/82)

Only 100 of 139 total aligned reads displayed.

GAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTGCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAAGAGCAGTATGTGGCGCT  >  NC_000913/1011301‑1011570

gAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTgg                                                                                                                                    <  2:273678/140‑1 (MQ=255)

    cGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAg                                                                                                                                <  1:1942227/140‑1 (MQ=255)

       ttGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCa                                                                                                                             <  2:1161584/140‑1 (MQ=255)

       ttGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCa                                                                                                                             <  2:1254207/140‑1 (MQ=255)

       ttGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCa                                                                                                                             <  2:868064/140‑1 (MQ=255)

       ttGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCa                                                                                                                             <  2:520841/140‑1 (MQ=255)

                  gcgTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGt                                                                                                                  <  1:808611/140‑1 (MQ=255)

                  gcgTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGt                                                                                                                  <  1:884478/140‑1 (MQ=255)

                  gcgTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGt                                                                                                                  <  1:1124292/140‑1 (MQ=255)

                    gTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGttt                                                                                                                <  1:1164476/140‑1 (MQ=255)

                      ttGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGt                                                                                                              <  2:86820/140‑1 (MQ=255)

                             tCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAac                                                                                                       >  1:1003891/1‑140 (MQ=255)

                              cAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAaca                                                                                                      <  1:318429/140‑1 (MQ=255)

                              cAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAaca                                                                                                      <  1:1842284/140‑1 (MQ=255)

                              cAAACCAAGCAACTTATTGATACTTGACAAACCGAACATCGATCTTGATGTCGTAACGCTGGAACTCCTTGCAGAACTGCTCCACAAGTAGCAGGACACGGTATCTTTGGTTAGCCACGACCGTCAAATTGTTGATAacc                                                                                                      <  2:2019369/140‑2 (MQ=255)

                               aaaCCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAATTGATCGACCGCTATCAGGGCACAGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAacac                                                                                                     <  2:1429221/140‑1 (MQ=255)

                               aaaCCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAacac                                                                                                     <  1:9688/140‑1 (MQ=255)

                                 aCCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCg                                                                                                   <  2:757195/140‑1 (MQ=255)

                                   cAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGtt                                                                                                 >  1:441081/1‑140 (MQ=255)

                                    aaGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTa                                                                                                <  1:2008208/140‑1 (MQ=255)

                                      gCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATATCACCGTTACa                                                                                              >  2:473237/1‑140 (MQ=255)

                                      gCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACa                                                                                              <  2:615298/140‑1 (MQ=255)

                                      gCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACa                                                                                              <  1:1810936/140‑1 (MQ=255)

                                      gCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACa                                                                                              >  2:807050/1‑140 (MQ=255)

                                      gCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACa                                                                                              <  1:1905437/140‑1 (MQ=255)

                                      gCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACa                                                                                              <  1:1427781/140‑1 (MQ=255)

                                      gCAACTTATTGATTCTTGACGAACCGACCAACGATATTGATGTCGAAACGCTGGTACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACa                                                                                              >  1:175981/1‑140 (MQ=255)

                                       cAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAg                                                                                             <  2:976401/140‑1 (MQ=255)

                                        aaCTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGa                                                                                            <  2:2108324/140‑1 (MQ=255)

                                        aaCTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGa                                                                                            >  2:232460/1‑140 (MQ=255)

                                             aTTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGtt                                                                                       >  2:1996877/1‑140 (MQ=255)

                                                 aTTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGAt                                                                                   >  2:1472227/1‑140 (MQ=255)

                                                    cTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAATACCGTTACAGAATGTTGGATCtt                                                                                >  2:942800/1‑140 (MQ=255)

                                                    cTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGtt                                                                                       <  2:913572/133‑1 (MQ=255)

                                                    cTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCtt                                                                                >  2:1466562/1‑140 (MQ=255)

                                                    cTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCtt                                                                                >  2:640885/1‑140 (MQ=255)

                                                    cTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGCATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCtt                                                                                >  2:666245/1‑140 (MQ=255)

                                                     ttGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTc                                                                               >  2:120533/1‑140 (MQ=255)

                                                      tGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCg                                                                              >  2:1944244/1‑140 (MQ=255)

                                                            aCCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAggcg                                                                        >  1:1609880/1‑140 (MQ=255)

                                                            aCCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAggcg                                                                        <  1:1305223/140‑1 (MQ=255)

                                                             ccGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAggcgg                                                                       <  1:804634/140‑1 (MQ=255)

                                                               gACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGgcggcg                                                                     >  1:1022254/1‑140 (MQ=255)

                                                               gACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGgcggcg                                                                     >  1:1191468/1‑140 (MQ=255)

                                                                          ttGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGt                                                          >  2:134581/1‑140 (MQ=255)

                                                                          ttGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGt                                                          <  2:877857/140‑1 (MQ=255)

                                                                          ttGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGt                                                          <  2:1003891/140‑1 (MQ=255)

                                                                           tGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTc                                                         >  2:663845/1‑140 (MQ=255)

                                                                               gTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTa                                                     >  2:822095/1‑140 (MQ=255)

                                                                               gTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCATCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTa                                                     >  2:671173/1‑140 (MQ=255)

                                                                                tCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTAt                                                    >  1:788590/1‑140 (MQ=255)

                                                                                  gAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGt                                                  >  2:1068824/1‑140 (MQ=255)

                                                                                  gAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGt                                                  <  1:822095/140‑1 (MQ=255)

                                                                                  gAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGt                                                  >  1:2057166/1‑140 (MQ=255)

                                                                                  gAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGt                                                  >  1:21595/1‑140 (MQ=255)

                                                                                  gAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCATCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGt                                                  <  1:671173/140‑1 (MQ=255)

                                                                                    aaCGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTcg                                                >  1:1833562/1‑140 (MQ=255)

                                                                                     aCGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTcgg                                               <  2:766990/140‑1 (MQ=255)

                                                                                     aCGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTcgg                                               <  2:362690/140‑1 (MQ=255)

                                                                                     aCGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTcgg                                               <  1:1068824/140‑1 (MQ=255)

                                                                                     aCGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTcgg                                               <  2:1863803/140‑1 (MQ=255)

                                                                                      cGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTTGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTcggc                                              <  1:619645/140‑1 (MQ=255)

                                                                                      cGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTcggc                                              <  1:461152/140‑1 (MQ=255)

                                                                                          ggAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGtt                                          <  2:441081/140‑1 (MQ=255)

                                                                                          ggAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGtt                                          <  1:232460/140‑1 (MQ=255)

                                                                                          ggAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGtt                                          >  2:1232009/1‑140 (MQ=255)

                                                                                           gAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTa                                         <  1:666245/140‑1 (MQ=255)

                                                                                               tgctgGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCat                                     <  1:1369323/140‑1 (MQ=255)

                                                                                                 ctgGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATTatga                                   >  1:684350/1‑140 (MQ=255)

                                                                                                 ctgGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCatga                                   <  1:1557364/140‑1 (MQ=255)

                                                                                                 ctgGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCatga                                   >  1:1702896/1‑140 (MQ=255)

                                                                                                 ctgGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCatga                                   <  1:1944244/140‑1 (MQ=255)

                                                                                                 ctgGAAGAACTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCatga                                   >  2:1261282/1‑140 (MQ=255)

                                                                                                      agaaCTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGccc                              >  2:1370181/1‑140 (MQ=255)

                                                                                                      agaaCTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGccc                              >  2:396190/1‑140 (MQ=255)

                                                                                                      agaaCTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGccc                              >  2:411562/1‑140 (MQ=255)

                                                                                                         aCTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTg                           <  1:640885/140‑1 (MQ=255)

                                                                                                          cTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTgg                          <  1:783574/140‑1 (MQ=255)

                                                                                                          cTGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTgg                          <  1:942800/140‑1 (MQ=255)

                                                                                                          atGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTgg                          <  2:1028282/139‑1 (MQ=255)

                                                                                                           tGATCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGt                         >  2:149137/1‑140 (MQ=255)

                                                                                                              tCGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAg                      >  2:895636/1‑140 (MQ=255)

                                                                                                               cGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGc                     <  2:247613/140‑1 (MQ=255)

                                                                                                               cGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGc                     <  1:396190/140‑1 (MQ=255)

                                                                                                               cGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGc                     <  1:1261282/140‑1 (MQ=255)

                                                                                                               cGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGc                     <  1:411562/140‑1 (MQ=255)

                                                                                                               cGACAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGc                     <  2:1609880/140‑1 (MQ=255)

                                                                                                                 aCAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCaa                   <  1:261330/140‑1 (MQ=255)

                                                                                                                 aCAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCaa                   <  2:1833562/140‑1 (MQ=255)

                                                                                                                 aCAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCaa                   <  2:1702896/140‑1 (MQ=255)

                                                                                                                 aCAGCTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCaa                   <  2:1611847/140‑1 (MQ=255)

                                                                                                                 aCAACTATCATGGCAAGGTACTTCTGGTTAGCCACGATCGTCAGTTTATCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGACGGTTATCATGATGCCCGTGGTCAGCaa                   <  2:286053/140‑1 (MQ=255)

                                                                                                                    acTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAagag                <  2:808250/139‑1 (MQ=255)

                                                                                                                     cTATCAGGGCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAAGAGc               <  1:1472227/140‑1 (MQ=255)

                                                                                                                            ggCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAAGAGCAGTAtgt        <  1:895636/140‑1 (MQ=255)

                                                                                                                             gCACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCCTGATGCCCGTGGTCAGCAAGAGCAGTAtgtg       >  1:1736535/1‑140 (MQ=255)

                                                                                                                              cACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAAGAGCAGTATGTgg      <  1:1675085/140‑1 (MQ=255)

                                                                                                                              cACGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAAGAGCAGTATGTgg      >  1:90907/1‑140 (MQ=255)

                                                                                                                                cGGTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAAGAGCAGTATGTGgcg    <  2:1728619/140‑1 (MQ=255)

                                                                                                                                  gTATTTCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAAGAGCAGTATGTGGCGCt  <  1:1641481/140‑1 (MQ=255)

GAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAAGAACTGATCGACAGCTATCAGGGCACGGTATTGCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATGTTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAAGAGCAGTATGTGGCGCT  >  NC_000913/1011301‑1011570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A