Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F48 I1 R1	45	83.3	2696702	99.2%	2675128	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	189,303	G→T	S68S (TCC→TCA)	map ←	methionine aminopeptidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	189,303	0	G	T	100.0%	246.8 / NA	68	S68S (TCC→TCA)	map	methionine aminopeptidase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (37/31); total (37/31)

ATAAACATTTTCGAGGTATCGCCGTGGAAACCATCTTTGATTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACGGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGATCATCTCCAGCACTT  >  NC_000913/189166‑189439

aTAAACATTTTCGAGGTATCGCCGTGGAAACCATCTTTGATTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGTACACCACTTCATTAATAGAGATGCAAACTGa                                                                                                                                        >  1:182016/1‑140 (MQ=255)

  aaaCATTTTCGAGGTATCGCCGTGGAAACCATCTTTGATTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGAtt                                                                                                                                      <  1:835227/140‑1 (MQ=255)

              ggTATCGCCGTGGAAACCATCTTTGATTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGt                                                                                                                          >  2:310487/1‑140 (MQ=255)

                  tCGCCGTGGAAACCATCTTTGATTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATa                                                                                                                      >  1:756199/1‑140 (MQ=255)

                    gCCGTGGAAACCATCTTTGATTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGc                                                                                                                    >  1:89839/1‑140 (MQ=255)

                         ggAAACCATCTTTGATTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGagg                                                                                                               <  2:1243128/140‑1 (MQ=255)

                          gAAACCATCTTTGATTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGaggc                                                                                                              >  2:1135208/1‑140 (MQ=255)

                                       aTTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACcgc                                                                                                 <  1:985087/140‑1 (MQ=255)

                                          aCGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCgtg                                                                                              <  1:768402/140‑1 (MQ=255)

                                          aCGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCgtg                                                                                              <  2:756199/140‑1 (MQ=255)

                                           cGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCgtgt                                                                                             <  1:693252/140‑1 (MQ=255)

                                           cGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCgtgt                                                                                             <  1:276751/140‑1 (MQ=255)

                                           aggTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGTACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCgtgt                                                                                             <  2:182016/139‑1 (MQ=255)

                                            ggTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGtgtt                                                                                            >  2:1165065/1‑140 (MQ=255)

                                             gTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGtgttg                                                                                           <  1:1135208/140‑1 (MQ=255)

                                              tGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGtgttgt                                                                                          >  2:450871/1‑140 (MQ=255)

                                                 cATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCa                                                                                       >  1:109459/1‑140 (MQ=255)

                                                    cAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTa                                                                                    <  1:886285/140‑1 (MQ=255)

                                                        gTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAAc                                                                                  >  2:499288/1‑138 (MQ=255)

                                                        gTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAAc                                                                                  <  1:499288/138‑1 (MQ=255)

                                                         ttAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAAt                                                                               <  1:324663/140‑1 (MQ=255)

                                                          tAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATg                                                                              <  1:587747/140‑1 (MQ=255)

                                                           aaCGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGt                                                                             >  2:770027/1‑140 (MQ=255)

                                                           aaCGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGt                                                                             <  2:928058/140‑1 (MQ=255)

                                                            aCGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTa                                                                            >  1:1031338/1‑140 (MQ=255)

                                                            aCGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTa                                                                            >  1:1077208/1‑140 (MQ=255)

                                                            aCGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTa                                                                            <  1:1165065/140‑1 (MQ=255)

                                                                 atCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCAt                                                                       >  1:41945/1‑140 (MQ=255)

                                                                   cGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAAt                                                                          >  2:1331048/1‑135 (MQ=255)

                                                                   cGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAAt                                                                          <  1:1331048/135‑1 (MQ=255)

                                                                   cGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTa                                                                     >  1:506355/1‑140 (MQ=255)

                                                                   cGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTa                                                                     <  1:696505/140‑1 (MQ=255)

                                                                          tttCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGc                                                              >  2:642291/1‑140 (MQ=255)

                                                                                   cTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCt                                                     >  2:13828/1‑140 (MQ=255)

                                                                                   cTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCt                                                     >  2:650575/1‑140 (MQ=255)

                                                                                     tAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCg                                                   >  2:620562/1‑140 (MQ=255)

                                                                                     tAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCg                                                   >  1:96025/1‑140 (MQ=255)

                                                                                     tAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCg                                                   >  2:756529/1‑140 (MQ=255)

                                                                                      aGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGc                                                  <  1:450871/140‑1 (MQ=255)

                                                                                      aGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGc                                                  >  1:113726/1‑140 (MQ=255)

                                                                                      aGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGc                                                  >  2:878087/1‑140 (MQ=255)

                                                                                            gTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCTGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCATCTCGCCGGTgt                                            >  2:1098972/1‑139 (MQ=255)

                                                                                             tCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCt                                           >  2:566333/1‑140 (MQ=255)

                                                                                             tCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCt                                           >  1:553494/1‑140 (MQ=255)

                                                                                             tCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCt                                           >  1:318812/1‑140 (MQ=255)

                                                                                               cGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGa                                         >  2:549788/1‑140 (MQ=255)

                                                                                                 ggATACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACg                                       <  1:756529/140‑1 (MQ=255)

                                                                                                   aTACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGcc                                     <  1:13828/140‑1 (MQ=255)

                                                                                                   aTACCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGcc                                     <  1:878087/140‑1 (MQ=255)

                                                                                                     aCCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCg                                   <  2:1077208/140‑1 (MQ=255)

                                                                                                     aCCGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCg                                   <  1:642291/140‑1 (MQ=255)

                                                                                                       cGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGt                                 >  1:358067/1‑140 (MQ=255)

                                                                                                       cGTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGt                                 <  2:318812/140‑1 (MQ=255)

                                                                                                        gTGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGtt                                <  2:109459/140‑1 (MQ=255)

                                                                                                         tGGCACACCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGttt                               >  1:16465/1‑140 (MQ=255)

                                                                                                            cacaCCACTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAAc                            >  1:100954/1‑140 (MQ=255)

                                                                                                               accacTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATa                         <  1:650575/140‑1 (MQ=255)

                                                                                                               accacTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATa                         <  2:128490/140‑1 (MQ=255)

                                                                                                                 cacTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACg                       >  1:447200/1‑140 (MQ=255)

                                                                                                                  acTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACgg                      >  1:1246194/1‑140 (MQ=255)

                                                                                                                   cTTCATTAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGt                     <  1:566333/140‑1 (MQ=255)

                                                                                                                         tAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGatc               <  1:310487/140‑1 (MQ=255)

                                                                                                                         tAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGatc               <  2:1315763/140‑1 (MQ=255)

                                                                                                                         tAATAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGatc               <  1:620562/140‑1 (MQ=255)

                                                                                                                           aTAGAGATGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGatcat             >  1:1313820/1‑140 (MQ=255)

                                                                                                                                gaTGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGATCATCTCCa        >  2:97396/1‑140 (MQ=255)

                                                                                                                                 aTGCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGATCATCTCCAg       >  1:236692/1‑140 (MQ=255)

                                                                                                                                   gCAAACTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGATCATCTCCAGCa     >  2:1191479/1‑140 (MQ=255)

                                                                                                                                      aaCTGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGATCATCTCCAGCACtt  <  2:1045418/140‑1 (MQ=255)

ATAAACATTTTCGAGGTATCGCCGTGGAAACCATCTTTGATTACGGTGACATCAATGTTAACGATATCGCCATCTTTCAGCAGCTTAGCATCGTCCGGGATACCGTGGCACACCACTTCATTAATAGAGATGCAAACGGATTTCGGATAGCCGTGATAGCCGAGGCAGGCAGAAACCGCGTGTTGTTCATTAACAATGTAATCATTACAGATGCGATCCAGCTCGCCGGTGCTGACGCCCGGTTTAACATACGGTTCGATCATCTCCAGCACTT  >  NC_000913/189166‑189439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A