Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F48 I1 R1	55	131.7	4456318	99.2%	4420667	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	524,094	C→A	F278L (TTC→TTA)	rhsD →	protein RhsD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	524,094	0	C	A	100.0%	238.9 / NA	71	F278L (TTC→TTA)	rhsD	protein RhsD
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (36/35); total (36/35)

GAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGTATACGGAAGCCG  >  NC_000913/523957‑524230

gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTacc                                                                                                                                        <  1:272072/140‑1 (MQ=255)

 aaaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTaccc                                                                                                                                       <  1:1966711/140‑1 (MQ=255)

 aaaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTaccc                                                                                                                                       <  2:1416304/140‑1 (MQ=255)

  aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCCCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTAAGCGTTACCCg                                                                                                                                      <  1:1868253/140‑1 (MQ=255)

    tCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGac                                                                                                                                    >  2:1788739/1‑140 (MQ=255)

       ccGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGacaca                                                                                                                                 <  1:1853758/140‑1 (MQ=255)

       ccGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGacaca                                                                                                                                 <  1:1198226/140‑1 (MQ=255)

           cGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGc                                                                                                                             >  2:927971/1‑140 (MQ=255)

            gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCCCCTCTTCGCTATCTTCTTCTGACGGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGGCACTCTGcc                                                                                                                            <  2:569/140‑1 (MQ=38)

            gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGcc                                                                                                                            <  1:927971/140‑1 (MQ=255)

            gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGcc                                                                                                                            <  1:991169/140‑1 (MQ=255)

            gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGcc                                                                                                                            <  1:1788739/140‑1 (MQ=255)

             tGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGcc                                                                                                                            <  1:44760/139‑1 (MQ=255)

             tGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGcc                                                                                                                            >  2:44760/1‑139 (MQ=255)

              gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCg                                                                                                                          <  1:2199496/140‑1 (MQ=255)

              gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCg                                                                                                                          <  2:762814/140‑1 (MQ=255)

                     ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGa                                                                                                                   >  1:1412853/1‑140 (MQ=255)

                       tGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAAt                                                                                                                 <  1:1080015/140‑1 (MQ=255)

                            ggcgggAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGc                                                                                                            <  1:838364/140‑1 (MQ=255)

                               gggAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGcccc                                                                                                         >  1:581512/1‑140 (MQ=255)

                                 gAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGccc                                                                                                          <  2:1389856/137‑1 (MQ=255)

                                 gAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGccc                                                                                                          >  1:1389856/1‑137 (MQ=255)

                                 gAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGa                                                                                                       >  2:36363/1‑140 (MQ=255)

                                 gAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGa                                                                                                       >  2:367192/1‑140 (MQ=255)

                                 gAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGa                                                                                                       <  2:1412853/140‑1 (MQ=255)

                                                   aCCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTc                                                                                     >  2:2157497/1‑140 (MQ=255)

                                                     cACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTcgg                                                                                   <  2:892984/140‑1 (MQ=255)

                                                        gCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTcggcgt                                                                                >  2:1135905/1‑139 (MQ=255)

                                                         cAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGgt                                                                               <  1:547307/140‑1 (MQ=255)

                                                              gcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGc                                                                          <  2:581512/140‑1 (MQ=255)

                                                               cAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCt                                                                         <  1:1840930/140‑1 (MQ=255)

                                                                  cGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGAt                                                                      >  2:1397127/1‑140 (MQ=255)

                                                                    tGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGc                                                                    >  1:1623227/1‑140 (MQ=255)

                                                                     gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCa                                                                   <  1:1245461/140‑1 (MQ=255)

                                                                      cGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCa                                                                   <  2:1965628/139‑1 (MQ=255)

                                                                      cGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCa                                                                   >  1:1965628/1‑139 (MQ=255)

                                                                      cGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCAc                                                                  >  1:249535/1‑140 (MQ=255)

                                                                      cGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCAc                                                                  >  1:710981/1‑140 (MQ=255)

                                                                             ggCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCgg                                                           <  2:249535/140‑1 (MQ=255)

                                                                              gCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGc                                                          >  2:1938917/1‑140 (MQ=255)

                                                                              gCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGCGTGGCTGATGAACGACCCCGc                                                          >  2:1239111/1‑140 (MQ=255)

                                                                                 cGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATa                                                       >  1:31609/1‑140 (MQ=255)

                                                                                 cGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATa                                                       <  2:1014407/140‑1 (MQ=255)

                                                                                     ccTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCg                                                   <  2:1623227/140‑1 (MQ=255)

                                                                                        ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGgag                                                >  1:822035/1‑140 (MQ=255)

                                                                                             cTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCt                                           <  1:1239111/140‑1 (MQ=255)

                                                                                                tcttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCCGCATACCCGGGGcgcccgcc                                        >  2:92641/1‑140 (MQ=255)

                                                                                                     ttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTg                                   >  2:2042949/1‑140 (MQ=255)

                                                                                                          aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACGGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCa                              <  2:2208862/140‑1 (MQ=255)

                                                                                                          aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCa                              >  1:33515/1‑140 (MQ=255)

                                                                                                          aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCa                              >  1:2041122/1‑140 (MQ=255)

                                                                                                          aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCa                              >  1:1723151/1‑140 (MQ=255)

                                                                                                          aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCa                              >  2:1710730/1‑140 (MQ=255)

                                                                                                           cAGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCAc                             <  1:1710730/140‑1 (MQ=255)

                                                                                                            ggTTCCAGCCATCTCACAGCCTCAGCGTTACCCGCCACGCTGCCCGGTACCGAATACGGCCCCGAGCGGGGTATCTGCCTTTCGGCGGTGTGTCTGATGCACGCCCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACt                            <  2:1307540/139‑1 (MQ=255)

                                                                                                            aGTTCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACt                            >  2:700659/1‑140 (MQ=255)

                                                                                                              ttCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCTGATAGCCTCGCCCCTGCGCCACtag                          >  1:1307540/1‑138 (MQ=255)

                                                                                                               tCCCGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGt                         <  1:367192/140‑1 (MQ=255)

                                                                                                                cccGCCCTCTCTCGGCCTCAGCTTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTg                        <  1:92641/140‑1 (MQ=255)

                                                                                                                cccGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTg                        >  2:1221931/1‑140 (MQ=255)

                                                                                                                cccGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTg                        <  2:31609/140‑1 (MQ=255)

                                                                                                                cccGCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTg                        <  1:1870638/140‑1 (MQ=255)

                                                                                                                   gCCCTCTCTCAGCCTCAGCGTTGCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGGCCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCgg                     <  2:2049756/140‑1 (MQ=255)

                                                                                                                   gCCCTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCgg                     <  2:710981/140‑1 (MQ=255)

                                                                                                                    cccTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGt                    <  1:1397127/140‑1 (MQ=255)

                                                                                                                     ccTCTCTCAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTa                   <  1:2042949/140‑1 (MQ=255)

                                                                                                                        ctctcAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGTAGAGCCTGCCCGCTGCGCCACTGGTg                        <  1:1587969/132‑1 (MQ=255)

                                                                                                                        ctctcAGCCTCAGCGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTg                        >  2:1587969/1‑132 (MQ=255)

                                                                                                                           tcagcctcagcGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGta             >  1:1887643/1‑140 (MQ=255)

                                                                                                                                 tcagcGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGTATACGGa       <  1:1221931/140‑1 (MQ=255)

                                                                                                                                   agcGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGTATACGGAAg     >  1:782391/1‑140 (MQ=255)

                                                                                                                                   agcGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGTATACGGAAg     >  1:610108/1‑140 (MQ=255)

                                                                                                                                   agcGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGTATACGGAAg     >  1:1894613/1‑140 (MQ=255)

                                                                                                                                   agcGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGTATACGGAAg     >  1:1649651/1‑140 (MQ=255)

                                                                                                                                   agcGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGTATACGGAAg     >  1:1109356/1‑140 (MQ=255)

                                                                                                                                   agcGTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCC‑CTGCGCCACTGGTGCGGTACACGTATACGGAAGc    >  1:1143466/1‑140 (MQ=255)

                                                                                                                                      gTTACCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGTATACGGAAGCCg  <  2:822035/140‑1 (MQ=255)

GAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCCTTTCGGCGGTGTGGCTGATGCACGACCCGGCATACCCGGAGAGCCTGCCCGCTGCGCCACTGGTGCGGTACACGTATACGGAAGCCG  >  NC_000913/523957‑524230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A