Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F48 I1 R1 55 131.7 4456318 99.2% 4420667 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 979,183 C→A A953D (GCC→GAC)  mukB → chromosome partitioning protein MukB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913979,1830CA100.0% 334.3 / NA 95A953D (GCC→GAC) mukBchromosome partitioning protein MukB
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (56/39);  total (56/39)

CGCGCGTTTTGTTCAGCAGTTTGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGCCCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGCGGAAGCG  >  NC_000913/979049‑979319
                                                                                                                                      |                                                                                                                                        
cgcgcgTTTTGTTCAGCAGTTTGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTc                                                                                                                                     >  1:1344553/1‑140 (MQ=255)
  cgcgTTTTGTTCAGCAGTTTGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTCTTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTcag                                                                                                                                   >  2:1875994/1‑140 (MQ=255)
   gcgTTTTGTTCAGCAGTTTGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTcagc                                                                                                                                  <  2:1344553/140‑1 (MQ=255)
    cgTTTTGTTCAGCAGTTTGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTcagca                                                                                                                                 <  1:1840613/140‑1 (MQ=255)
              agcagTTTGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGcc                                                                                                                       <  2:1441214/140‑1 (MQ=255)
               gcagTTTGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGccc                                                                                                                      >  1:433572/1‑140 (MQ=255)
                   tttGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGATCAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGAc                                                                                                                  <  2:1976802/140‑1 (MQ=255)
                   tttGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGcc                                                                                                                       >  1:645603/1‑135 (MQ=255)
                   tttGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGcc                                                                                                                       <  2:645603/135‑1 (MQ=255)
                   tttGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGAc                                                                                                                  >  1:1177209/1‑140 (MQ=255)
                     tGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACgg                                                                                                                >  2:1943953/1‑140 (MQ=255)
                       gCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGaa                                                                                                              <  2:827029/140‑1 (MQ=255)
                          aTCAACTGGTGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAgtg                                                                                                           <  1:976496/140‑1 (MQ=255)
                          aTCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAgtg                                                                                                           <  2:634731/140‑1 (MQ=255)
                                 ggCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGc                                                                                                    >  2:590886/1‑140 (MQ=255)
                                 ggCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGc                                                                                                    >  1:1932534/1‑140 (MQ=255)
                                  gCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGcg                                                                                                   <  1:1875994/140‑1 (MQ=255)
                                       aCTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTg                                                                                              >  2:1064984/1‑140 (MQ=255)
                                       aCTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTg                                                                                              >  1:229173/1‑140 (MQ=255)
                                        cTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTgc                                                                                             <  1:950264/140‑1 (MQ=255)
                                        atGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTgc                                                                                             <  2:1152262/139‑1 (MQ=255)
                                         tGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTgcg                                                                                            <  1:211806/140‑1 (MQ=255)
                                         tGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTgcg                                                                                            <  1:2101559/140‑1 (MQ=255)
                                            aaCCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCAc                                                                                         >  2:1842224/1‑140 (MQ=255)
                                            aaCCGATTGTTTAGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCAc                                                                                         <  2:283414/140‑1 (MQ=255)
                                                      ttCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTAtt                                                                               <  2:1364392/140‑1 (MQ=255)
                                                            aTTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACt                                                                         >  1:906600/1‑140 (MQ=255)
                                                             ttGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTc                                                                        <  1:1943953/140‑1 (MQ=255)
                                                               gCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCgg                                                                      >  2:364439/1‑140 (MQ=255)
                                                                  gagCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAg                                                                   <  2:229173/140‑1 (MQ=255)
                                                                    gCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGaa                                                                 <  1:1842224/140‑1 (MQ=255)
                                                                    gCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGaa                                                                 >  1:1433185/1‑140 (MQ=255)
                                                                     cGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGa                                                                           >  1:910875/1‑129 (MQ=255)
                                                                     cGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGa                                                                           <  2:910875/129‑1 (MQ=255)
                                                                     cGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGaaa                                                                >  1:1575574/1‑140 (MQ=255)
                                                                     cGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGaaa                                                                >  2:1803929/1‑140 (MQ=255)
                                                                     cGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCA‑GCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAAt                                                               >  1:1575004/1‑140 (MQ=255)
                                                                       aCCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATg                                                              >  1:282761/1‑140 (MQ=255)
                                                                       aCCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATg                                                              >  1:311201/1‑140 (MQ=255)
                                                                       aCCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAACTATTCTGACTCGGCAGAAATg                                                              >  1:1857891/1‑140 (MQ=255)
                                                                        cccGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCGGAAATGc                                                             >  2:2106349/1‑140 (MQ=255)
                                                                        cccGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGc                                                             >  2:1705719/1‑140 (MQ=255)
                                                                        cccGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGc                                                             >  2:1251507/1‑140 (MQ=255)
                                                                        cccGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGc                                                             >  1:1832930/1‑140 (MQ=255)
                                                                         ccGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCt                                                            <  2:1177209/140‑1 (MQ=255)
                                                                          cGGAACAGTTCGAACAGTTAAAGGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGAAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCtt                                                           >  1:1600578/1‑140 (MQ=255)
                                                                               aaGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCACACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCgg                                                      <  2:752153/139‑1 (MQ=255)
                                                                                  ttCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGt                                                     >  2:1801014/1‑138 (MQ=255)
                                                                                  ttCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGt                                                     <  1:1801014/138‑1 (MQ=255)
                                                                                  ttCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTaa                                                   >  2:1830356/1‑140 (MQ=255)
                                                                                  ttCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTaa                                                   >  2:172647/1‑140 (MQ=255)
                                                                                  ttCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTaa                                                   >  1:1515098/1‑140 (MQ=255)
                                                                                  ttCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTaa                                                   >  1:1247431/1‑140 (MQ=255)
                                                                                  ttCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTaa                                                   >  2:895017/1‑140 (MQ=255)
                                                                                  ttCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTaa                                                   >  1:2076914/1‑140 (MQ=255)
                                                                                  ttCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTCTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTaa                                                   >  1:1134810/1‑140 (MQ=255)
                                                                                     gAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAg                                                <  2:1832930/140‑1 (MQ=255)
                                                                                       aCAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCg                                              >  1:470438/1‑140 (MQ=255)
                                                                                          gTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCA‑GCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGAtct                                          <  2:1575004/140‑1 (MQ=255)
                                                                                           ttAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGAtct                                          >  1:840488/1‑140 (MQ=255)
                                                                                           ttAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGAtct                                          >  2:1545134/1‑140 (MQ=255)
                                                                                           ttAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGAtct                                          <  2:1932534/140‑1 (MQ=255)
                                                                                           ttAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGAtct                                          >  2:1853656/1‑140 (MQ=255)
                                                                                           ttAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGAtct                                          <  2:1290146/140‑1 (MQ=255)
                                                                                             aaaaGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCATAAATGCTTAGCGGTAACAGCGATCTCa                                        <  1:1803929/140‑1 (MQ=255)
                                                                                             aaaaGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCa                                        <  1:1064984/140‑1 (MQ=255)
                                                                                                   agaTTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGaaa                                  >  1:1365330/1‑140 (MQ=255)
                                                                                                     aTTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGaaaaa                                >  2:1236660/1‑140 (MQ=255)
                                                                                                     aTTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGaaaaa                                >  2:2149318/1‑140 (MQ=255)
                                                                                                     aTTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGaaaaa                                >  1:579736/1‑140 (MQ=255)
                                                                                                     aTTACGCGTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGaaaaa                                >  2:1639739/1‑140 (MQ=255)
                                                                                                         cgcgTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGc                            >  1:1656869/1‑140 (MQ=255)
                                                                                                            gTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTg                         <  2:1992444/140‑1 (MQ=255)
                                                                                                            gTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTATAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTg                         <  2:1656869/140‑1 (MQ=255)
                                                                                                            gTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGGGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTg                         >  1:1513084/1‑140 (MQ=255)
                                                                                                            gTACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGAAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTg                         <  2:1600578/140‑1 (MQ=255)
                                                                                                             tACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGa                        <  2:684048/140‑1 (MQ=255)
                                                                                                             tACTCTCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGa                        <  2:470438/140‑1 (MQ=255)
                                                                                                               ctctCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGa                        >  1:1727410/1‑138 (MQ=255)
                                                                                                               ctctCAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGa                        <  2:1727410/138‑1 (MQ=255)
                                                                                                                 ctcAGCAGATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGCGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGt                    >  1:854668/1‑140 (MQ=255)
                                                                                                                    agcagATGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTg                 >  2:2226194/1‑140 (MQ=255)
                                                                                                                        gATGCAGCGCGATGACCGTCAGCAGGCGTTTGCTCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAAc             >  1:1248423/1‑140 (MQ=255)
                                                                                                                         aTGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACa            >  2:1460342/1‑140 (MQ=255)
                                                                                                                         aTGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACa            >  1:1586855/1‑140 (MQ=255)
                                                                                                                          tGCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAg           >  2:1781662/1‑140 (MQ=255)
                                                                                                                           gCAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAgg          <  1:2149318/140‑1 (MQ=255)
                                                                                                                            cAGCGCGATGACCGTCAGCGGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGc         >  1:972120/1‑140 (MQ=255)
                                                                                                                            cAGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGc         >  1:1225419/1‑140 (MQ=255)
                                                                                                                             aGCGCGATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGCg        <  2:1247431/140‑1 (MQ=255)
                                                                                                                                gcgATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGCGGaa     >  2:1901290/1‑140 (MQ=255)
                                                                                                                                gcgATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGCGGaa     >  1:2047718/1‑140 (MQ=255)
                                                                                                                                 cgATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGCGGAAg    <  2:2076914/140‑1 (MQ=255)
                                                                                                                                 cgATGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGCGGAAg    <  1:1853656/140‑1 (MQ=255)
                                                                                                                                   aTGACCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGCGGAAGCg  <  2:1365330/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                        
CGCGCGTTTTGTTCAGCAGTTTGGCAATCAACTGGCGAAACTGGAACCGATTGTTTCGGTATTGCAGAGCGACCCGGAACAGTTCGAACAGTTAAAAGAAGATTACGCGTACTCTCAGCAGATGCAGCGCGATGCCCGTCAGCAGGCGTTTGCCCTGACGGAAGTGGTGCAGCGTCGTGCGCACTTTAGCTATTCTGACTCGGCAGAAATGCTTAGCGGTAACAGCGATCTCAACGAAAAACTGCGTGAACGTCTGGAACAGGCGGAAGCG  >  NC_000913/979049‑979319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A