Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F48 I1 R1	61	74.3	2613450	99.1%	2589928	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	361,130	G→T	W380L (TGG→TTG)	cynX →	cyanate transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	361,130	0	G	T	100.0%	276.4 / NA	78	W380L (TGG→TTG)	cynX	cyanate transporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (39/39); total (39/39)

TGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCA  >  NC_000913/360996‑361264

tGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCa                                                                                                                                   >  2:366018/1‑140 (MQ=255)

 gCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCaa                                                                                                                                  >  1:1172682/1‑140 (MQ=255)

      gTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAgg                                                                                                                             >  1:985890/1‑140 (MQ=255)

       tGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGc                                                                                                                            >  2:1195501/1‑140 (MQ=255)

       tGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTCCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGc                                                                                                                            >  2:572076/1‑140 (MQ=255)

            ttCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCatgat                                                                                                                       >  2:435629/1‑140 (MQ=255)

                  cGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACg                                                                                                                 >  1:1294276/1‑140 (MQ=255)

                    tgctgcGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCt                                                                                                               >  1:1093756/1‑140 (MQ=255)

                      ctgcGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTg                                                                                                             >  1:818760/1‑140 (MQ=255)

                      ctgcGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAAGCATGATGCGACGCttt                                                                                                             >  2:491256/1‑139 (MQ=255)

                           tagtaTCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCt                                                                                                        <  2:201002/140‑1 (MQ=255)

                                   gCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTTGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTg                                                                                                >  1:967801/1‑140 (MQ=255)

                                   gCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCtttt                                                                                                >  2:114640/1‑139 (MQ=255)

                                   gCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCtttt                                                                                                >  2:444242/1‑139 (MQ=255)

                                   gCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCtttt                                                                                                >  2:761876/1‑139 (MQ=255)

                                   gCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTg                                                                                                >  1:1178367/1‑140 (MQ=255)

                                     ggCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGtt                                                                                              >  1:1216291/1‑140 (MQ=255)

                                      gCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTc                                                                                             >  1:1233057/1‑140 (MQ=255)

                                        aaTTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCAt                                                                                           >  2:551755/1‑140 (MQ=255)

                                        aaTTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCAt                                                                                           >  2:997385/1‑140 (MQ=255)

                                            aCCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCg                                                                                       >  1:1218292/1‑140 (MQ=255)

                                              cTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGa                                                                                     <  1:366018/140‑1 (MQ=255)

                                               tGATGGACTGGGCATTTCATGCGCTGTGTGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGAt                                                                                    <  1:434467/140‑1 (MQ=255)

                                               tGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGAt                                                                                    <  2:1172682/140‑1 (MQ=255)

                                               tGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGAt                                                                                    <  1:1200984/140‑1 (MQ=255)

                                                 aTGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGc                                                                                  <  2:985890/140‑1 (MQ=255)

                                                 aTGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGc                                                                                  >  1:709166/1‑140 (MQ=255)

                                                   ggACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCgg                                                                                <  2:684013/140‑1 (MQ=255)

                                                   ggACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCgg                                                                                <  1:114640/140‑1 (MQ=255)

                                                   ggACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCgg                                                                                <  1:561565/140‑1 (MQ=255)

                                                   ggACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCgg                                                                                <  2:843004/140‑1 (MQ=255)

                                                   ggACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCgg                                                                                <  1:1195501/140‑1 (MQ=255)

                                                   ggACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTACTGCGCTTTGTTCATGCCGGATGCgg                                                                                <  1:602063/140‑1 (MQ=255)

                                                   ggACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTACGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGATCATGCCGGATGCgg                                                                                <  1:572076/140‑1 (MQ=255)

                                                    gACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGc                                                                               <  2:935586/140‑1 (MQ=255)

                                                    gACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGc                                                                               <  2:255397/140‑1 (MQ=255)

                                                    gACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGc                                                                               <  1:298937/140‑1 (MQ=255)

                                                      cTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTa                                                                             >  1:499559/1‑140 (MQ=255)

                                                        gggCATTTCATGCGCTGTGCGTCGTTGGGCCGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAAt                                                                           >  1:86263/1‑140 (MQ=255)

                                                           aaTTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTa                                                                        <  2:197485/139‑1 (MQ=255)

                                                              ttCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGAt                                                                     <  1:1140427/140‑1 (MQ=255)

                                                                 aTGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGc                                                                  >  1:248130/1‑140 (MQ=255)

                                                                    cgcTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAAGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGa                                                               <  1:491256/140‑1 (MQ=255)

                                                                        gtgCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACtt                                                           >  1:601045/1‑140 (MQ=255)

                                                                        gtgCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACtt                                                           >  1:178269/1‑140 (MQ=255)

                                                                         tgCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTg                                                          <  1:96329/140‑1 (MQ=255)

                                                                         tgCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTg                                                          <  1:435629/140‑1 (MQ=255)

                                                                         tgCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTg                                                          >  1:443191/1‑140 (MQ=255)

                                                                         tgCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTg                                                          <  1:761876/140‑1 (MQ=255)

                                                                              cgtTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAGAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGc                                                     <  2:16033/140‑1 (MQ=255)

                                                                              cgtTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGc                                                     <  2:818760/140‑1 (MQ=255)

                                                                              cgtTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGc                                                     <  2:499559/140‑1 (MQ=255)

                                                                              cgtTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGc                                                     <  1:444242/140‑1 (MQ=255)

                                                                                   ggCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGAt                                                >  2:413465/1‑140 (MQ=255)

                                                                                   ggCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCATGAt                                                <  2:967801/140‑1 (MQ=255)

                                                                                          gatCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCa                                         <  2:709166/140‑1 (MQ=255)

                                                                                          gatCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCa                                         >  1:140919/1‑140 (MQ=255)

                                                                                          gatCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGATCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCa                                         <  2:95239/140‑1 (MQ=255)

                                                                                                  cccTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCa                                 >  2:1072598/1‑140 (MQ=255)

                                                                                                    cTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAgg                               <  1:551755/140‑1 (MQ=255)

                                                                                                     tGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGc                              >  2:1028033/1‑140 (MQ=255)

                                                                                                     tGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGc                              >  2:173891/1‑140 (MQ=255)

                                                                                                     tGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGc                              >  1:1124787/1‑140 (MQ=255)

                                                                                                       cGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCaa                            >  1:1185231/1‑140 (MQ=255)

                                                                                                       cGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCaa                            >  1:169407/1‑140 (MQ=255)

                                                                                                       cGTTTTGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGCCATGATGCGACGCTGGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTATTGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCaa                            >  1:101651/1‑140 (MQ=255)

                                                                                                            tGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAAttttt                       <  2:178269/140‑1 (MQ=255)

                                                                                                            tGCACCAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAAttttt                       <  2:1178367/140‑1 (MQ=255)

                                                                                                                 cAGTACGTTTTCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAAt                  <  2:1124787/140‑1 (MQ=255)

                                                                                                                         tttCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACt           >  2:579047/1‑139 (MQ=255)

                                                                                                                         tttCCGCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACt           <  1:579047/139‑1 (MQ=255)

                                                                                                                              gCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt     >  2:637433/1‑140 (MQ=255)

                                                                                                                              gCAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt     >  1:651654/1‑140 (MQ=255)

                                                                                                                               cAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAtt    <  2:96704/140‑1 (MQ=255)

                                                                                                                               cAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAtt    <  1:1072598/140‑1 (MQ=255)

                                                                                                                               cAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAtt    <  2:1216291/140‑1 (MQ=255)

                                                                                                                               cAGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAtt    <  2:1093756/140‑1 (MQ=255)

                                                                                                                                aGCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc   <  1:413465/140‑1 (MQ=255)

                                                                                                                                 gCTGTTGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa  <  2:1185231/140‑1 (MQ=255)

TGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCACCAGTACGTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCA  >  NC_000913/360996‑361264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A