Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F48 I1 R1	61	74.3	2613450	99.1%	2589928	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	632,683	C→A	V265V (GTG→GTT)	hcxA ←	hydroxycarboxylate dehydrogenase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	632,683	0	C	A	100.0%	298.9 / NA	85	V265V (GTG→GTT)	hcxA	hydroxycarboxylate dehydrogenase A
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (45/40); total (45/40)

GTGTAGTCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGCACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCGTTAACTGTTGATTTT  >  NC_000913/632547‑632816

gtgtAGTCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACg                                                                                                                                    >  1:1124296/1‑140 (MQ=255)

  gtAGTCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGt                                                                                                                                  >  1:199960/1‑140 (MQ=255)

  gtAGTCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGt                                                                                                                                  <  1:1281574/140‑1 (MQ=255)

    aGTCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCa                                                                                                                                <  1:255500/140‑1 (MQ=255)

    aGTCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCa                                                                                                                                <  1:737704/140‑1 (MQ=255)

    aGTCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCa                                                                                                                                <  1:353699/140‑1 (MQ=255)

    aGTCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCa                                                                                                                                <  2:775885/140‑1 (MQ=255)

      tCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGa                                                                                                                              >  1:309225/1‑140 (MQ=255)

      tCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGa                                                                                                                              >  2:1081677/1‑140 (MQ=255)

       cGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTT‑‑GGCAGAACGGTCAGACCg                                                                                                                           >  1:251633/1‑140 (MQ=255)

        ggCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGAcc                                                                                                                            >  1:459945/1‑140 (MQ=255)

          cAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGt                                                                                                                          >  1:309502/1‑140 (MQ=255)

           aGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGtt                                                                                                                         >  1:1031574/1‑140 (MQ=255)

           aGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATAATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGtt                                                                                                                         >  1:1064740/1‑140 (MQ=255)

                acaaCGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGCCCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCa                                                                                                                    <  1:1270148/138‑1 (MQ=255)

                       tGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGAAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATg                                                                                                             >  2:7144/1‑140 (MQ=255)

                             gCTCCAGTTAATTGCGCCAGCACATAATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTgc                                                                                                       <  2:1064740/140‑1 (MQ=255)

                               tCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGTTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTgccg                                                                                                     >  2:1029672/1‑140 (MQ=255)

                                  aGTTAACTGCGCCAGCACATCATCCTGACCCAGCGAGGCGCTTTGCGCGAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTGTGCGGCGGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCca                                                                                                  <  2:543226/140‑1 (MQ=255)

                                      aaTTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACAcg                                                                                              <  2:1023864/140‑1 (MQ=255)

                                      aaTTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACAcg                                                                                              <  1:207702/140‑1 (MQ=255)

                                      aaTTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACAcg                                                                                              <  2:289971/140‑1 (MQ=255)

                                       aTTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCcac                                                                                                 >  1:1198916/1‑136 (MQ=255)

                                       aTTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCcac                                                                                                 <  2:1198916/136‑1 (MQ=255)

                                         tGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGt                                                                                           >  1:883843/1‑140 (MQ=255)

                                          gcgcCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTa                                                                                          >  2:554219/1‑140 (MQ=255)

                                           cgcCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTaa                                                                                         <  2:199960/140‑1 (MQ=255)

                                           cgcCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTaa                                                                                         >  1:1209351/1‑140 (MQ=255)

                                             ccAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTaaaa                                                                                       >  1:985298/1‑140 (MQ=255)

                                             ccAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTaaaa                                                                                       >  2:1244662/1‑140 (MQ=255)

                                             ccAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTaaaa                                                                                       >  2:112164/1‑140 (MQ=255)

                                             ccAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTaaaa                                                                                       >  1:347824/1‑140 (MQ=255)

                                             ccAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTaaaa                                                                                       >  2:414650/1‑140 (MQ=255)

                                                gCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGa                                                                                    <  1:681115/140‑1 (MQ=255)

                                                     tcatcCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGcc                                                                               <  1:1048904/140‑1 (MQ=255)

                                                      catcCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGccc                                                                              <  2:911089/140‑1 (MQ=255)

                                                          cTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGac                                                                          <  1:371112/140‑1 (MQ=255)

                                                           tGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGacc                                                                         >  1:283089/1‑140 (MQ=255)

                                                           tGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGacc                                                                         >  1:822726/1‑140 (MQ=255)

                                                            gACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTT‑‑GGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGaccacc                                                                      <  2:251633/140‑1 (MQ=255)

                                                             aCCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGaccac                                                                       >  1:467987/1‑140 (MQ=255)

                                                                cAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCaccaa                                                                    >  2:1295408/1‑140 (MQ=255)

                                                                  gCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCaccaacc                                                                  >  1:102317/1‑140 (MQ=255)

                                                                  gCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCaccaacc                                                                  <  1:1081677/140‑1 (MQ=255)

                                                                   cAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCaccaacca                                                                 >  2:779579/1‑140 (MQ=255)

                                                                   cAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCaccaacca                                                                 >  1:241772/1‑140 (MQ=255)

                                                                   cAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGCAAAACGATCGCCCAGACCaccaacca                                                                 >  2:519663/1‑140 (MQ=255)

                                                                     aGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATc                                                               >  1:236922/1‑140 (MQ=255)

                                                                      ggCGCTTTGCACCAGAATTCCGTAGGCGGCTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATcc                                                              <  1:709521/140‑1 (MQ=255)

                                                                      ggCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATcc                                                              <  2:1031574/140‑1 (MQ=255)

                                                                       gcgcTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATccc                                                             >  1:27031/1‑140 (MQ=255)

                                                                        cgcTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCcca                                                            >  1:463890/1‑140 (MQ=255)

                                                                             tGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCccaccacc                                                       <  1:779579/140‑1 (MQ=255)

                                                                             tGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCccaccacc                                                       <  1:781242/140‑1 (MQ=255)

                                                                             tGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCccaccacc                                                       <  1:1155141/140‑1 (MQ=255)

                                                                                 ccAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCa                                                   >  2:1297009/1‑140 (MQ=255)

                                                                                    gAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCaata                                                <  1:314853/140‑1 (MQ=255)

                                                                                     aaTTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGTCCGTTATGCACGGCATGAGCTGCCGCCACACGCGCAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCaataa                                               <  1:519663/140‑1 (MQ=255)

                                                                                     aaTTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCaataa                                               >  1:1022983/1‑140 (MQ=255)

                                                                                     aaTTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCaataa                                               <  2:1124296/140‑1 (MQ=255)

                                                                                       ttCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGTAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAataata                                             >  1:549400/1‑140 (MQ=255)

                                                                                       ttCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAataata                                             >  2:868238/1‑140 (MQ=255)

                                                                                       ttCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAataata                                             <  1:1099658/140‑1 (MQ=255)

                                                                                       ttCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAataata                                             >  2:713386/1‑140 (MQ=255)

                                                                                       ttCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAataata                                             <  2:1028528/140‑1 (MQ=255)

                                                                                       ttCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAataata                                             <  1:554219/140‑1 (MQ=255)

                                                                                       ttCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAataata                                             <  1:1244662/140‑1 (MQ=255)

                                                                                       atCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCATCAataata                                             <  1:15116/139‑1 (MQ=255)

                                                                                         ccGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGc                                           <  2:27031/140‑1 (MQ=255)

                                                                                               gCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATccac                                     >  1:305357/1‑140 (MQ=255)

                                                                                                 gACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATccacca                                   >  2:62176/1‑140 (MQ=255)

                                                                                                  aCTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCcaccac                                  <  2:822726/140‑1 (MQ=255)

                                                                                                   cTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACcaca                                 >  1:763189/1‑140 (MQ=255)

                                                                                                    tttGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACAt                                <  2:1209351/140‑1 (MQ=255)

                                                                                                      tGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCg                              <  2:283089/140‑1 (MQ=255)

                                                                                                             gTGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATg                       >  1:531892/1‑140 (MQ=255)

                                                                                                              tGGAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGa                      >  2:841789/1‑140 (MQ=255)

                                                                                                               ggAGAAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGAt                     <  1:362438/140‑1 (MQ=255)

                                                                                                                gagaAACTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGAtt                    >  2:553926/1‑140 (MQ=255)

                                                                                                                   aaaCTTCTCGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCg                 <  2:347824/140‑1 (MQ=255)

                                                                                                                         ctcGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCGtt               <  1:1128534/136‑1 (MQ=255)

                                                                                                                         ctcGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCGtt               >  2:1128534/1‑136 (MQ=255)

                                                                                                                         ctcGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCGTTAACt           <  2:467987/140‑1 (MQ=255)

                                                                                                                         ctcGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCGTTAACt           >  1:770894/1‑140 (MQ=255)

                                                                                                                         ctcGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCGTTAACt           >  2:1282008/1‑140 (MQ=255)

                                                                                                                           cGGTTTGCGGCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCGTTAACTGt         <  1:634885/140‑1 (MQ=255)

                                                                                                                                  gggCAGAACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCGTTAACTGTTGAtttt  <  2:1004481/139‑1 (MQ=255)

GTGTAGTCGGCAGATGAAAACGCTGATACGCTCCAGTTAATTGCGCCAGCACATCATCCTGACCCAGCAAGGCGCTTTGCACCAGAATTCCGTAGGCGACTTTGGTGCCGTGGAGAAACTTCTCGGTTTGCGGCAGCACGGTCAGACCGTTATGCACGGCATGAGCTGCCGCCACACGCGTAAAACGATCGCCCAGACCACCAACCATCCCACCACCAGCAATAATAGCATCCACCACATCGCAAAATGATTGCGTTAACTGTTGATTTT  >  NC_000913/632547‑632816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A