Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F48 I1 R1 62 93.4 3176452 99.2% 3151040 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 743,686 C→A R32R (CGA→AGA)  pxpB → 5‑oxoprolinase component B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913743,6860CA100.0% 156.6 / NA 48R32R (CGA→AGA) pxpB5‑oxoprolinase component B
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (27/21);  total (27/21)

ATTCCTAATCCTGCATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGCGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCTGGTGGG  >  NC_000913/743553‑743818
                                                                                                                                     |                                                                                                                                    
atTCCTAATCCTGCATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGCAGGGCAGGGACTGGGACCCCCGGGGGCGCTGGGTAGCCAGAAATGGATCTTGAGACTgt                                                                                                                                >  2:592154/1‑139 (MQ=255)
 ttCCTAATCCTGCATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCCGAAACGGATCTGGAGACTGgc                                                                                                                               >  2:1108777/1‑140 (MQ=255)
    aaaaTCCTAAAAAACAAAAAATAAGAGGAATCGAAAGGGAAGGGGGCGTTTTTTTATTTGAGGGGAGAGGGGGGGGTGGTGCGGAACCGGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCa                                                                                                                            <  2:810016/138‑1 (MQ=255)
      aaTCCTGCATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGc                                                                                                                          >  1:267922/1‑140 (MQ=255)
        tCCTACATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGt                                                                                                                        >  1:1170682/1‑140 (MQ=255)
            gCATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCtgg                                                                                                                    >  1:1024018/1‑140 (MQ=255)
            gCATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGGAGTTCTGGAACTGGGACCGCCGGGGACGCGGGCTAGCCCGAAACGGATCTGGAGACTGGCGCTGCGtgtgt                                                                                                                    >  2:707933/1‑139 (MQ=255)
            gCATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGAATGGCTTGAACTGGAACCGCCGGTGTCGCTGGGTTGCCAAAAACGGATATGGGGACGTGCGCAGGGGCtgt                                                                                                                    >  2:1284086/1‑139 (MQ=255)
             cATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTTGAACCGCCGGTGACGCTTGCTAGCCAGAAACGGGTCTGGGGACTAGCGCAGCGTCtggt                                                                                                                   >  2:316865/1‑140 (MQ=255)
             cATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGGCGCTGGCCAGCCCGAAAAGGGTCTGGGGACTGGCGCAGCGGCtggt                                                                                                                   >  2:705479/1‑140 (MQ=255)
             cATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTTGAGACTGGCGCAGCGGCtggt                                                                                                                   >  1:1587365/1‑140 (MQ=255)
             cATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCtggt                                                                                                                   >  1:586030/1‑140 (MQ=255)
             cATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCtggt                                                                                                                   >  2:1506235/1‑140 (MQ=255)
             cATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGGGACGCTGGCTATCCAGAAACGGATCTGGAGACTGGCGCAGCGTCtggg                                                                                                                   >  1:1573831/1‑139 (MQ=255)
             cATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGGGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCtggt                                                                                                                   >  1:1025157/1‑140 (MQ=255)
                  cGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGGGACTGGCGCAGCGGCTGGGGGatt                                                                                                              >  1:123858/1‑139 (MQ=255)
                  cGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGata                                                                                                              >  1:495011/1‑140 (MQ=255)
                             agGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAAtgtg                                                                                                   >  1:432490/1‑140 (MQ=255)
                              gggATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTTGCGCAGCGTCTGGTGGATATGCCGAAtgtgt                                                                                                  >  2:686520/1‑139 (MQ=255)
                                 aTCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTg                                                                                               >  1:582016/1‑140 (MQ=255)
                                  tCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGGGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGa                                                                                              >  2:727549/1‑140 (MQ=255)
                                   cGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTAGAACCCCCGGTGACGCTTGCTAGCCAGAAACGGATCTGGAGACTGGCGCCGCGTCTGGGGGGTATGCCGAATGTGGTTGaa                                                                                             >  2:783094/1‑140 (MQ=255)
                                     aaggagCAACGAGGGTTTTTTTTTGTGAGAGGAGAAGGGGGGGTGGTGGAGGAACGGTAGCCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGc                                                                                           <  2:819386/135‑1 (MQ=255)
                                       aGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCa                                                                                         >  1:215850/1‑140 (MQ=255)
                                         tGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCAtt                                                                                       >  1:48080/1‑140 (MQ=255)
                                         tGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGGCTGGTGGATATGCCGAATGTGGTTGAAGCCAtt                                                                                       >  2:1453277/1‑140 (MQ=255)
                                          acagggggcgtGTTGTTATTTGAGGGGAAAAGGGGGGGTGGTGCGGAAACGGGACCCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTc                                                                                      <  2:1024018/133‑1 (MQ=255)
                                           cAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGGGGATATGCCGAATGTGGTTGAAGCCATTcc                                                                                     >  1:923644/1‑140 (MQ=255)
                                                aGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGGACTGGAACCGCCGGTGACGCCTGCTAGCCCGAAACGGGTCTGGAGACTGGCGCCGCGTCTGGTGGATATGCCGGATGTGGTTGGAGCCATTCCCGGcc                                                                                >  2:1094328/1‑139 (MQ=255)
                                                   gcgTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGGTGAAGCCATTCCCGGCATGa                                                                             >  1:1157040/1‑140 (MQ=255)
                                                            tCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCa                                                                    >  1:1560618/1‑140 (MQ=255)
                                                                aTAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATTACGGt                                                                >  2:808739/1‑140 (MQ=255)
                                                                aTAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGGGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACggg                                                                >  1:1248278/1‑139 (MQ=255)
                                                                   ggTGAAACGGCGGTAGTGCTGGGACTGGAACCGCCGGTGGCGCTTGCTAACCAGAAATGGATCTGGAGACTGGCGCTGCGTCTGGTGGATATGGCGAATGTGGTTGGAGCCATTCCCGGCATGAACAATATCACGGTggt                                                             >  2:492375/1‑138 (MQ=255)
                                                                   ggTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGAt                                                             >  1:578047/1‑140 (MQ=255)
                                                                   ggTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGAt                                                             >  1:142460/1‑140 (MQ=255)
                                                                   ggTGAAACGGCGGTAGTGCTGGAACCGGAACCGCCGGTGGCGCTGGCTAACCAGAAACGGATCTGGAGACTGGCGCACCGACTGGGGGGAATACCGAATGAGGGTGAAGCCCTTCCCGGCATGAACAATATAACGGTGAt                                                             >  2:1480717/1‑140 (MQ=255)
                                                                    gTGAAGCGGGGGTGGTGCTGGACGTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGAtt                                                            <  2:135310/140‑1 (MQ=255)
                                                                    gTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGAtt                                                            >  1:229204/1‑140 (MQ=255)
                                                                     tGAAACGGCGGTAGTGGTGGAATTGGTACCGCCGGGGACGCTGGCTAGCCAGAAACGGATCTGGAGACCCGCGCAGCGTCTGGTGGATATGCCGAATGTGGGTGAAGACATTTCCCGCATTTACAATATCATGGTGGttt                                                           >  2:798908/1‑140 (MQ=255)
                                                                        aaCGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGc                                                        >  1:135310/1‑140 (MQ=255)
                                                                        aaCGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGGGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGc                                                        >  1:323401/1‑140 (MQ=255)
                                                                        aaCGGCGGTAGTGCTGGAACTGGAACCGCCGGGGACGCTGGCTAGCCAGAAACGGATCTGGGGACTGGCGCAGCGGCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGGGAATTTgt                                                        >  2:1410110/1‑139 (MQ=255)
                                                                         aggggggTAGGGCGGGAACGGGAGCCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCg                                                       <  2:65245/135‑1 (MQ=255)
                                                                         aggggggTAGGGATGGAAGGGAAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCg                                                       <  2:123858/135‑1 (MQ=255)
                                                                          cggcggTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAACCATTCCCGGCATGAACAATATCACGGTGATTTTGCGt                                                      >  1:109130/1‑140 (MQ=255)
                                                                          cggcggTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGGGGATATGCCGAATGGGGTTGAAGCCATTTCCGGCATGAACAATATCACGGTGATTTTTCGt                                                      >  2:674734/1‑140 (MQ=255)
                                                                                      ggaaaggggagcCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTcg                                          <  1:1108777/133‑1 (MQ=255)
                                                                                         aaggaaaacCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTcgctg                                       <  1:705479/134‑1 (MQ=255)
                                                                                            ggaagccgccgGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTcgctggcg                                    <  2:48080/135‑1 (MQ=255)
                                                                                            ggaacccgccgGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTcgctggcg                                    <  2:1157040/135‑1 (MQ=255)
                                                                                              gaacCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTcgctggcgct                                  <  2:229204/140‑1 (MQ=255)
                                                                                              aatccgccgGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTcgctggcgct                                  <  1:783094/137‑1 (MQ=255)
                                                                                                acCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTcgc                                         >  2:1272033/1‑131 (MQ=255)
                                                                                                acCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTcgc                                         <  1:1272033/131‑1 (MQ=255)
                                                                                                 ccgccgGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGa                               <  1:1410110/140‑1 (MQ=255)
                                                                                                 ccgccgGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGa                               <  1:338027/140‑1 (MQ=255)
                                                                                                  cgccgGTGACGCTGGCTAGCCATAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGAt                              <  1:1328887/140‑1 (MQ=255)
                                                                                                   gccgGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATg                             <  1:1506235/140‑1 (MQ=255)
                                                                                                    ccgGTGACGCTGGCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGc                            >  2:172310/1‑140 (MQ=255)
                                                                                                                gCTAGCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGttt                <  2:586030/140‑1 (MQ=255)
                                                                                                                    gCCAGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCaa            <  1:1094328/140‑1 (MQ=255)
                                                                                                                       aGAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGc         >  2:397233/1‑140 (MQ=255)
                                                                                                                        gAAACGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCt        <  1:1312468/140‑1 (MQ=255)
                                                                                                                           aCGGATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCtggt     <  1:798908/140‑1 (MQ=255)
                                                                                                                              gATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCTGGTggg  >  2:1195808/1‑140 (MQ=255)
                                                                                                                              gATCTGGAGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCTGGTggg  >  2:1396780/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                    
ATTCCTAATCCTGCATAACGAATAATCAGAGGGATCGAAAGTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCAGAAACGGATCTGGCGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCACGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCTGGTGGG  >  NC_000913/743553‑743818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A