Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F48 I1 R1	62	93.4	3176452	99.2%	3151040	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	781,266	G→T	intergenic (+44/‑103)	lysY → / → lysZ	tRNA‑Lys/tRNA‑Lys

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	781,266	0	G	T	98.8%	292.4 / NA	83	intergenic (+44/‑103)	lysY/lysZ	tRNA‑Lys/tRNA‑Lys
Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (33/49); total (33/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCATCACCCACCACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAC  >  NC_000913/781131‑781400

tcatcaCCCACCACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGcc                                                                                                                                    >  1:1402862/1‑140 (MQ=255)

    cacccaccACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGTCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCa                                                                                                                                <  2:1129416/140‑1 (MQ=255)

    cacccaccACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCa                                                                                                                                >  2:950515/1‑140 (MQ=255)

      cccaccACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAAc                                                                                                                              <  1:993463/140‑1 (MQ=255)

      cccaccACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAAc                                                                                                                              <  2:1527412/140‑1 (MQ=255)

        caccacTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAAGGTTTCGCCAGCAACgg                                                                                                                            >  2:373459/1‑140 (MQ=255)

        caccacTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACgg                                                                                                                            <  1:1225315/140‑1 (MQ=255)

          ccacTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCTGGTTCGAATCCTGAACTATCCACCCGTTTTAACATCAAACTCAGAGGTCATGCGTGAAGGATATCGCTTCTCCTGCAACTGct                                                                                                                          >  2:541804/1‑139 (MQ=14)

            acTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCg                                                                                                                        <  2:1403367/140‑1 (MQ=255)

             cTCGGGTCGTTAGCTCAGTTGGTATAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGt                                                                                                                       >  2:118897/1‑140 (MQ=255)

              tCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTa                                                                                                                      >  1:294687/1‑140 (MQ=255)

              tCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAAGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGACAACGTTTCGCCAGCAACGGCCCGTa                                                                                                                      >  1:358120/1‑140 (MQ=255)

               cGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAg                                                                                                                     <  1:484156/140‑1 (MQ=255)

                gggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAgg                                                                                                                    >  1:816666/1‑140 (MQ=255)

                 ggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAggg                                                                                                                   >  1:705608/1‑140 (MQ=255)

                 ggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAggg                                                                                                                   <  2:203173/140‑1 (MQ=255)

                     gTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGgcgag                                                                                                               >  2:891693/1‑140 (MQ=255)

                     gTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGgcgag                                                                                                               >  1:128260/1‑140 (MQ=255)

                        aGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGgcgagcga                                                                                                            >  1:841162/1‑140 (MQ=255)

                        aGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGgcgagcga                                                                                                            >  2:1119852/1‑140 (MQ=255)

                        aGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGgcgagcga                                                                                                            >  2:951154/1‑140 (MQ=255)

                         gCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGagcgaa                                                                                                           <  1:950515/140‑1 (MQ=255)

                            cAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGagcgaagcg                                                                                                        >  1:1528470/1‑140 (MQ=255)

                              gTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAg                                                                                                      <  2:580588/140‑1 (MQ=255)

                              gTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAg                                                                                                      <  2:1528470/140‑1 (MQ=255)

                                  gTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt                                                                                                  >  1:153602/1‑140 (MQ=255)

                                   tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATc                                                                                                 >  1:1344693/1‑140 (MQ=255)

                                      agCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTg                                                                                              <  1:424594/140‑1 (MQ=255)

                                        cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCa                                                                                            <  1:1536047/140‑1 (MQ=255)

                                        cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCa                                                                                            <  2:472525/140‑1 (MQ=255)

                                         aGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTGAAGCGTGAAGGAAACCGTTTCGCCAGCAACGGCCCGAAGGCCGAGCGAAGCGAGGCATCCTGccc                                                                                           >  2:106995/1‑138 (MQ=14)

                                          gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGTGAGTCATCCTGCACg                                                                                          >  2:1146736/1‑140 (MQ=255)

                                           ttGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGa                                                                                         >  1:1355042/1‑140 (MQ=255)

                                            tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc                                                                                        >  1:1147523/1‑140 (MQ=255)

                                                ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccac                                                                                    <  2:439516/140‑1 (MQ=255)

                                                ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccac                                                                                    >  1:99084/1‑140 (MQ=255)

                                                ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccac                                                                                    <  2:816666/140‑1 (MQ=255)

                                                ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccac                                                                                    <  2:1355042/140‑1 (MQ=255)

                                                ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccac                                                                                    <  2:699616/140‑1 (MQ=255)

                                                ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccac                                                                                    <  1:913468/140‑1 (MQ=255)

                                                  ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccacca                                                                                  <  2:705608/140‑1 (MQ=255)

                                                  ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccacca                                                                                  <  2:128260/140‑1 (MQ=255)

                                                  ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccacca                                                                                  <  2:1402862/140‑1 (MQ=255)

                                                  ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccacca                                                                                  >  1:1068884/1‑140 (MQ=255)

                                                  ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccacca                                                                                  <  2:952789/140‑1 (MQ=255)

                                                          ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTaaa                                                                          >  1:1031704/1‑140 (MQ=255)

                                                          ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTaaa                                                                          >  2:805867/1‑140 (MQ=255)

                                                          ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTaaa                                                                          >  2:1155346/1‑140 (MQ=255)

                                                                  aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAATATTGGcc                                                                  >  2:133956/1‑140 (MQ=255)

                                                                    gTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGcccc                                                                <  2:153602/140‑1 (MQ=255)

                                                                    gTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGcccc                                                                >  1:619388/1‑140 (MQ=255)

                                                                              tGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAAt                                                      >  1:49593/1‑140 (MQ=255)

                                                                                cACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCt                                                    >  1:1460405/1‑140 (MQ=255)

                                                                                  agACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCttt                                                  <  2:1344693/139‑1 (MQ=255)

                                                                                       caccaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGt                                             <  2:841162/140‑1 (MQ=255)

                                                                                       caccaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGt                                             <  2:49593/140‑1 (MQ=255)

                                                                                       caccaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGt                                             <  2:619388/140‑1 (MQ=255)

                                                                                        accaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTa                                            <  2:320479/140‑1 (MQ=255)

                                                                                         ccaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTaa                                           <  1:941161/140‑1 (MQ=255)

                                                                                          caGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTaaa                                          >  2:416232/1‑139 (MQ=255)

                                                                                           aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAaca                                         <  1:111065/140‑1 (MQ=255)

                                                                                            gTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAacac                                        <  2:1177582/140‑1 (MQ=255)

                                                                                               ttAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCg                                     >  2:1132893/1‑140 (MQ=255)

                                                                                                    aTCAAACTCAGATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATgg                                <  1:829330/140‑1 (MQ=255)

                                                                                                       tgagtttgATGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTc                             >  1:1017316/8‑140 (MQ=255)

                                                                                                           tCAGACGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTa                         <  2:975763/140‑1 (MQ=255)

                                                                                                               aTGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                     <  2:99084/140‑1 (MQ=255)

                                                                                                               aTGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                     <  1:951154/140‑1 (MQ=255)

                                                                                                               aTGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                     <  1:891693/140‑1 (MQ=255)

                                                                                                               aTGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                     >  1:864069/1‑140 (MQ=255)

                                                                                                                tGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCCGGTAACACCCGTATGGGTCGTTAGCTCa                    <  1:1132893/140‑1 (MQ=255)

                                                                                                                tGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCa                    <  2:1147523/140‑1 (MQ=255)

                                                                                                                tGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCa                    <  1:974366/140‑1 (MQ=255)

                                                                                                                tGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCa                    <  1:138797/140‑1 (MQ=255)

                                                                                                                tGTTAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCa                    <  1:541804/140‑1 (MQ=255)

                                                                                                                tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCATAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCa                    <  2:1106941/140‑1 (MQ=255)

                                                                                                                  ttAAGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGt                  <  2:395281/140‑1 (MQ=255)

                                                                                                                     aGCGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGGATGGGTCGTTAGCTCAGTTgg               >  2:878304/1‑140 (MQ=255)

                                                                                                                       cGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa             <  2:294687/140‑1 (MQ=255)

                                                                                                                       cGTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa             >  1:496295/1‑140 (MQ=255)

                                                                                                                        gTGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTag            <  1:1119852/140‑1 (MQ=255)

                                                                                                                         tGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCTTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTaga           >  1:870577/1‑140 (MQ=255)

                                                                                                                         tGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccacca                                                                                  <  1:867117/69‑1 (MQ=255)

                                                                                                                         tGAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTaga           >  1:646328/1‑140 (MQ=255)

                                                                                                                          gAAGGATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTagag          <  1:805867/140‑1 (MQ=255)

                                                                                                                              gATAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGt      <  2:1080018/140‑1 (MQ=255)

                                                                                                                               aTAACGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGtt     <  1:118897/140‑1 (MQ=255)

                                                                                                                                  aCGTTTCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAc  <  2:441921/140‑1 (MQ=255)

TCATCACCCACCACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAC  >  NC_000913/781131‑781400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A