Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 115 276.2 7960526 99.2% 7896841 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,725,031 C→T A46A (GCG→GCA)  U712_19205 ← Uncharacterized protein ywcI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,725,0310CT99.2% 1290.7 / NA 366A46A (GCG→GCA) U712_19205Uncharacterized protein ywcI
Reads supporting (aligned to +/- strand):  ref base C (3/0);  new base T (172/189);  total (175/191)
Fisher's exact test for biased strand distribution p-value = 1.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 370 total aligned reads displayed.

CCATGTAAAGATGCGGGCCAGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACA  >  CP006881/3724883‑3725177
                                                                                                                                                    |                                                                                                                                                   
  aTGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACAAAACGAGACCtgcg                                                                                                                                                  >  2:1390383/1‑150 (MQ=255)
    gTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATCCATAAAACGAAACGGGACCTGCGGc                                                                                                                                                >  2:1604922/1‑150 (MQ=255)
     tAAAGATGCGGGCCCGCTCTCTCCTGCTTTGTCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCCTTCTGCTTTTCTTCCTCACTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGcc                                                                                                                                               <  2:2351098/150‑1 (MQ=255)
         gATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCCTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCCCAGCCATCCGCCATTCATAAAGCGAACCGAGTCCTGCGGCCTGCa                                                                                                                                           <  1:584681/150‑1 (MQ=255)
           tGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGGATTCGCTTTCTGCTTTTCTTCCTCAATCACAGCCATCCGCCATTCATAAAACGGAACCAGTGCCACGGCCTGCAca                                                                                                                                         >  1:2497563/1‑149 (MQ=255)
           tGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACCGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCAcc                                                                                                                                         >  1:2616236/1‑150 (MQ=255)
           tGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCAca                                                                                                                                         <  1:3478281/150‑2 (MQ=255)
           tGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCAca                                                                                                                                         >  2:3890064/1‑149 (MQ=255)
              gggCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCAcagcc                                                                                                                                      <  2:1943499/150‑1 (MQ=255)
              gggCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTCTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCAcagcc                                                                                                                                      <  2:729666/150‑1 (MQ=255)
               ggCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCGcagccg                                                                                                                                     >  2:104634/1‑150 (MQ=255)
               ggCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCAcagccg                                                                                                                                     <  1:3407819/150‑1 (MQ=255)
                   cgCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCctt                                                                                                                                 <  1:1839831/149‑1 (MQ=255)
                    gCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACagccgccctt                                                                                                                                >  2:2449526/1‑146 (MQ=255)
                    gCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTCCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCcttt                                                                                                                                <  2:917048/150‑1 (MQ=255)
                       ctctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTGCTTTTATAAAGCGCGGCGGATTGCGCTTCCTGCGTTTCTTCCTCATTCACAGCCCTCCGCCATTCATAACCCGGAACGAGTCCTGCGGCCTGCACCGCCGCCTTTCtc                                                                                                                             >  2:132899/1‑149 (MQ=255)
                       ccctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCtt                                                                                                                             <  1:1717616/148‑1 (MQ=255)
                         ctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATGAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCATAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTg                                                                                                                           <  1:180571/150‑1 (MQ=255)
                         ctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCCCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATCCATAACACGCAACGAGTCCTGCGACCTGCACAGCCGCCTTTCTTTg                                                                                                                           >  2:93216/1‑150 (MQ=255)
                           ccTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATTAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGt                                                                                                                         >  1:1288560/1‑150 (MQ=255)
                           ccTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGt                                                                                                                         <  1:3018416/150‑1 (MQ=255)
                            cTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTa                                                                                                                        <  1:2744153/150‑1 (MQ=255)
                            cTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTa                                                                                                                        <  2:2679933/150‑1 (MQ=255)
                              gCTGTGGCGATTCCTTGAAGGCTTGCAAACATCTTTTTTTATAAAGCGCGCCGGCTTTCGCTTTCTGCTTTTCTTCCTCATCCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCCCAGCCGCCTTTCTTTGGTATg                                                                                                                      <  1:1919378/150‑1 (MQ=255)
                                 ttGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCCCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTAc                                                                                                                   <  2:247788/150‑1 (MQ=255)
                                 ttGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTCCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTAc                                                                                                                   <  1:221076/150‑1 (MQ=255)
                                  tGGCGATCCCTTGAAGGCTTGCAAACATCTTCTTTTTTAAAGCGCGGCGCCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGACACGAGTCCTGCGGCCCGCACAGCCGCCTTTCTTTGGTATGTACg                                                                                                                  <  1:785235/150‑1 (MQ=255)
                                   ggCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGc                                                                                                                 >  2:661109/1‑150 (MQ=255)
                                    gCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCt                                                                                                                >  1:220104/1‑150 (MQ=255)
                                    gCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCt                                                                                                                <  1:473719/150‑1 (MQ=255)
                                     cGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTg                                                                                                               >  2:2846272/1‑150 (MQ=255)
                                      gATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGGTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGACCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTgg                                                                                                              >  1:1090049/1‑149 (MQ=255)
                                        ttCCTTGAAGGCTTGCAACCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGc                                                                                                            <  1:79895/150‑1 (MQ=255)
                                         tCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCACATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGTCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGcc                                                                                                           <  1:1356778/150‑1 (MQ=255)
                                          ccTTGAAGGCTTGCAAACATCTTCTCTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTCCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCg                                                                                                          <  2:1100379/150‑1 (MQ=255)
                                             tggaGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGGACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAAt                                                                                                       >  1:247605/4‑150 (MQ=255)
                                                  gCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGAcc                                                                                                  <  2:1570980/150‑2 (MQ=255)
                                                   cTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGAccg                                                                                                 >  2:2524684/1‑148 (MQ=255)
                                                     tGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCCCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCCTTCTTTGGTATGGACGCTTGGCCGGATAGAccccg                                                                                               >  1:2948276/1‑146 (MQ=255)
                                                       cAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGc                                                                                             <  1:510299/150‑1 (MQ=255)
                                                        aaccATCTCCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCCCCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCa                                                                                            <  1:354393/147‑1 (MQ=255)
                                                        aaaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCa                                                                                            >  1:1958402/1‑150 (MQ=255)
                                                        aaaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCa                                                                                            >  2:3095193/1‑150 (MQ=255)
                                                         aaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAg                                                                                           <  1:2126780/150‑1 (MQ=255)
                                                         aaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAg                                                                                           <  1:535204/150‑1 (MQ=255)
                                                         aaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTCCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAg                                                                                           <  1:36628/150‑1 (MQ=255)
                                                           cATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCGGcc                                                                                         >  1:3288883/1‑150 (MQ=255)
                                                             tcttctTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGc                                                                                       <  1:1233166/150‑1 (MQ=255)
                                                             tcttctTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGGCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGTGCCGGATAGTCCGCGGCAGgcgc                                                                                       >  2:296131/1‑150 (MQ=255)
                                                              cttcttTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCa                                                                                      >  2:1994138/1‑150 (MQ=255)
                                                                tccttttTAAGGCGCGGCGGCTTTCGCTTCCTGCTTTCCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGt                                                                                    <  1:3729753/147‑1 (MQ=255)
                                                                   tttATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACCGCCATCCGCCAATCATAAAACGAAACGTGGCCTGCGGCCTGCACAGCCGCCCTTCTTTGGGATGGTCGCTGTGCCGAACAGACCGCGGCAGCCGCAgggtt                                                                                 >  2:2620971/1‑146 (MQ=255)
                                                                   tttATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGtttt                                                                                 >  2:114237/1‑150 (MQ=255)
                                                                   tttATAAAGCGCGGCGGCTTTCGCTTCCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGACCTGCGGCCTGCACACCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGtttt                                                                                 <  1:2678688/150‑1 (MQ=255)
                                                                     tataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGGATGGGCCGCGGCAGCCGGAGGTTTTc                                                                               >  1:2536421/1‑150 (MQ=255)
                                                                      ataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAACCGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCt                                                                              <  1:387438/150‑1 (MQ=255)
                                                                       taAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGGAGGTTTTCTg                                                                             >  2:453322/1‑150 (MQ=255)
                                                                        aaaGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGt                                                                            <  1:979065/150‑1 (MQ=255)
                                                                         aaGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGGATAGACCGCGGCAGCCGCAGGTTTTCTgcc                                                                           >  2:1862638/1‑148 (MQ=255)
                                                                           gcgcGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACACCCCTCCGCCATTCATAAAACGAAACGCGTCCTGCGGCCTGCACAGCCGCGTTTCCTTGGGATGTACGCTGCGCCGAAAAGACCGCGGCAGCCCCAGTTTTTCTGTTCg                                                                         >  1:3915590/1‑150 (MQ=255)
                                                                              cggcggCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCACCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCg                                                                      <  1:1024810/150‑1 (MQ=255)
                                                                               ggcggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGt                                                                     <  1:2310678/150‑1 (MQ=255)
                                                                                  ggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCAc                                                                  <  1:1546925/150‑1 (MQ=255)
                                                                                    cTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGGAGTTTTTCTGTCCGGCGGCAccc                                                                >  1:89815/1‑150 (MQ=255)
                                                                                     tttCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCCGCGTCAcccc                                                               >  1:1610445/1‑149 (MQ=255)
                                                                                     tttCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCa                                                               >  2:1672089/1‑150 (MQ=255)
                                                                                     tttCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTCTTTCTGTGCGGCGTCAcccc                                                               >  2:2171617/1‑149 (MQ=255)
                                                                                        cGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCCCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGGATGTACGCTGGGCCGAAAAGACCGCGGCAGCCGCAGGTTTTTTGGCCGGCGTCcccccggt                                                            >  1:2875445/1‑146 (MQ=255)
                                                                                         gCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCCGAGCCGAAAAGACCGCGGCAGGCGCAGGTTTTCTGTCCGGCGGCACCCCGTtc                                                           >  1:724836/1‑150 (MQ=255)
                                                                                            ttctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGGCCGCGGCAGCCGCAGGTTTTCTGTCCGGCGTCACCCAGGtcatc                                                        >  2:3474633/7‑150 (MQ=255)
                                                                                              ctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGGTCATCaa                                                      >  1:3802118/5‑150 (MQ=255)
                                                                                               tgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGGTTTTCTGTCCGGCGTCACCCCGTTCATCaaa                                                     >  1:3594107/4‑150 (MQ=255)
                                                                                                gcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTGACCCCGTTCATCaaaa                                                    >  1:244248/3‑150 (MQ=255)
                                                                                                   tttCTTCCTCATTCACTGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACTGCCGCCTTTCTTTGGTATGTACGCTGTGCCGAATAGACCGCGGCGGCCGCGGGGTTTCTGTCCGGCGTCACCCCGGTCATCAAAACGa                                                 >  1:1438958/1‑150 (MQ=255)
                                                                                                   tttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGGCACCCAGTTCATCCAAAAGa                                                 >  2:764813/1‑150 (MQ=255)
                                                                                                       ttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGGTTTTCTGTCCCGCGTCACCCAGGTCATCAAAAAGACCAt                                             >  2:53172/1‑150 (MQ=255)
                                                                                                         ccccATTCACAGCCATCCACCATCCATAAAACGAAACGAGTCCTGCGGCCTGCACACCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATcc                                           <  2:2788389/147‑1 (MQ=255)
                                                                                                          cTCCTTCACAGCCACCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCCCAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCca                                          <  2:3411474/150‑1 (MQ=255)
                                                                                                          cTCATTCACACCCATCCGCCTTTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCca                                          <  1:673493/150‑1 (MQ=255)
                                                                                                           tCATCCACAGCCATCCGCCATTCATAAACCGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCcac                                         <  2:2911718/150‑1 (MQ=255)
                                                                                                              ttCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAAGCCATCCACA‑cc                                     >  2:3690765/1‑150 (MQ=255)
                                                                                                              ttCACAGCCAACCCCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATC‑AAAAGACCATCCACA‑ccc                                    <  1:2287713/150‑1 (MQ=255)
                                                                                                               tCACAGCCACCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑ccc                                    <  1:424364/150‑1 (MQ=255)
                                                                                                                cacaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGGACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCCGTTCCTCTAAAAGGCCATCCACA‑cccc                                   >  2:2074734/1‑149 (MQ=255)
                                                                                                                  caGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTa                                 <  1:647662/150‑1 (MQ=255)
                                                                                                                   ggccccccGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAACAAGACCATCCACA‑CCCGTaa                                <  1:2003570/144‑1 (MQ=255)
                                                                                                                      cATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTTTGTCCGGGGCCACCCAGTTCACCAAAAAGAGCATCCACA‑ccccccaaga                             >  1:1760487/1‑143 (MQ=255)
                                                                                                                            ccATTCATAACACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGATCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAg                       <  1:847006/150‑1 (MQ=255)
                                                                                                                            ccATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAg                       <  2:3607118/150‑1 (MQ=255)
                                                                                                                              attCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCa                     <  1:2825828/148‑1 (MQ=255)
                                                                                                                                tCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGGCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAACAAACCATCCACA‑CCCGTAAAGATACCAGCaaa                   >  1:3137532/1‑150 (MQ=255)
                                                                                                                                tCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCCGTTTTTCTGTCCCGCGTCACCCAGTGCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCaaa                   >  1:1488763/1‑150 (MQ=255)
                                                                                                                                 cATAAAACGAACCGAGTCCTGCGGCCTGCACAGCCGCCGTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCAGCAGAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAAc                  <  2:3315431/150‑1 (MQ=255)
                                                                                                                                  aTAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACg                 <  2:1482562/150‑1 (MQ=255)
                                                                                                                                  aTAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGGTTTTCTTTCCGGCGTCACCCCGTTCATCCAAAAGACCATCCACA‑CCCCTAAAGATACAAACCAACg                 >  1:23958/1‑150 (MQ=255)
                                                                                                                                   tAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGt                <  1:2782193/150‑1 (MQ=255)
                                                                                                                                    aaaaCGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCCGCGTCACCCCGTTCATCAAAAAGACCATCCACA‑CCCCTAAAAATACAAGCAAACGtt               >  1:186944/1‑150 (MQ=255)
                                                                                                                                     aaacgaaacgAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTTCGGCCTGACCCCGATCATCAAAAAGACCATCCACACCCCGAAAAGA‑ACCAGCCAACGttt              >  1:1664432/1‑150 (MQ=255)
                                                                                                                                             cgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGaaa      <  1:114237/148‑1 (MQ=255)
                                                                                                                                              gaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGGCCATCCACA‑CCCGTAAAGATACAAGCAAACGGTTCATAGaaaa     >  2:2249432/2‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CCATGTAAAGATGCGGGCCAGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACA  >  CP006881/3724883‑3725177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A