Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	115	276.2	7960526	99.2%	7896841	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,725,043	C→A	A42A (GCG→GCT)	U712_19205 ←	Uncharacterized protein ywcI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,725,043	0	C	A	99.4%	1184.3 / NA	357	A42A (GCG→GCT)	U712_19205	Uncharacterized protein ywcI
Reads supporting (aligned to +/- strand): ref base C (2/0); major base A (164/187); minor base G (2/0); total (169/188)
Fisher's exact test for biased strand distribution p-value = 2.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 373 total aligned reads displayed.

TGCGGGCCAGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTT  >  CP006881/3724894‑3725191

tGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACCGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCAcc                                                                                                                                                       >  1:2616236/1‑150 (MQ=255)

    ggCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCGcagccg                                                                                                                                                   >  2:104634/1‑150 (MQ=255)

    ggCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCAcagccg                                                                                                                                                   <  1:3407819/150‑1 (MQ=255)

        cgCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCctt                                                                                                                                               <  1:1839831/149‑1 (MQ=255)

        cgCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCctt                                                                                                                                               >  2:285652/2‑150 (MQ=255)

        cgCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCctt                                                                                                                                               <  1:898084/149‑1 (MQ=255)

         gCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACagccgccctt                                                                                                                                              >  2:2449526/1‑146 (MQ=255)

            ctctcCTGCTTTGGCGATTCCTTGAAGGCTTGCACACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCtt                                                                                                                                           <  2:1959743/150‑1 (MQ=255)

              ctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCCCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATCCATAACACGCAACGAGTCCTGCGACCTGCACAGCCGCCTTTCTTTg                                                                                                                                         >  2:93216/1‑150 (MQ=255)

               tcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACCGCCATCCGCCATTCATAAAACGAAACGAGGCCTGCGGCCTGCACAGCCGCCTTTCTTTgg                                                                                                                                        >  2:138294/1‑150 (MQ=255)

                 cTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTa                                                                                                                                      <  2:2679933/150‑1 (MQ=255)

                 cTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTa                                                                                                                                      <  1:2744153/150‑1 (MQ=255)

                      ttGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCCCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTAc                                                                                                                                 <  2:247788/150‑1 (MQ=255)

                       gggCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTCCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACg                                                                                                                                <  2:21941/149‑1 (MQ=255)

                         gCGATCCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCt                                                                                                                              <  2:842786/150‑1 (MQ=255)

                           gtttCCATGAAGGCTTGCAGACATCTTCTTTAATAAAGCGCGGCGGCTTTCGCTTTCTGCTGTTCTTCCTCACTCCCAGCCATCCGCCATCCATAAAACGAAACGAGCCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGa                                                                                                                            <  1:132934/148‑1 (MQ=255)

                           gATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGGTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGACCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTgg                                                                                                                            >  1:1090049/1‑149 (MQ=255)

                              tCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGcc                                                                                                                         <  2:1112384/150‑1 (MQ=255)

                              tCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCAGCGGCCTGCACAGCCGCCTTCCTTTGGTATGTACGCTGAGcc                                                                                                                         <  1:28979/150‑1 (MQ=255)

                               ccTTGAAGGCTTGCACACATCTTCTTTTATAAAGCGGGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCg                                                                                                                        <  1:1495297/150‑1 (MQ=255)

                               ccTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCg                                                                                                                        <  2:1239873/150‑1 (MQ=255)

                                cTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGa                                                                                                                       <  1:2270904/150‑1 (MQ=255)

                                  tggaGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGGACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAAt                                                                                                                     >  1:247605/4‑150 (MQ=255)

                                  tGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACCGCCGCCTTTCTTTGGTTTGGTCGCTGGGCCGCAt                                                                                                                     >  1:2012884/1‑150 (MQ=255)

                                  tGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAAt                                                                                                                     <  1:3574776/150‑1 (MQ=255)

                                    aaGGCTTGCATACATCTTCTTTTATAAAGGGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAg                                                                                                                   <  1:3730967/150‑1 (MQ=255)

                                    aaGGCTTGCACACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGCCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAg                                                                                                                   <  2:1691879/150‑1 (MQ=255)

                                     aGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAACACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGa                                                                                                                  <  1:2571104/150‑1 (MQ=255)

                                     aGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGGATAgg                                                                                                                  >  2:3660884/1‑149 (MQ=255)

                                       gCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGAcc                                                                                                                <  2:1570980/150‑2 (MQ=255)

                                        cTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGAccg                                                                                                               >  2:2524684/1‑148 (MQ=255)

                                          tGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCCGCGCAGCCGCCTTTCTTCGGTATGAACGCTGAGGCGGAAAGACcgcg                                                                                                             >  2:2121062/1‑150 (MQ=255)

                                            cAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGc                                                                                                           <  1:510299/150‑1 (MQ=255)

                                                cATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCGGcc                                                                                                       >  1:3288883/1‑150 (MQ=255)

                                                  tcttctTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGc                                                                                                     <  1:1233166/150‑1 (MQ=255)

                                                   cttcttTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCCAATAGACCGCGGCAGCCGCa                                                                                                    >  2:749968/1‑150 (MQ=255)

                                                    ttcttTTATAAAGCGCGGCGGCTTCCGCTTCCTGCTTTTCTTCCTCATTCCCAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAg                                                                                                   <  1:437921/150‑1 (MQ=255)

                                                     tcttTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGt                                                                                                  <  1:1803549/150‑1 (MQ=255)

                                                     tcctttATAAAGAGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCACATTCACAGCCATCCGCCATTCATAAATCGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCCTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGt                                                                                                  <  1:361877/147‑1 (MQ=255)

                                                      cttTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGGCGCAGtg                                                                                                 >  2:3027104/1‑149 (MQ=255)

                                                        tttATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACCGCCATCCGCCAATCATAAAACGAAACGTGGCCTGCGGCCTGCACAGCCGCCCTTCTTTGGGATGGTCGCTGTGCCGAACAGACCGCGGCAGCCGCAgggtt                                                                                               >  2:2620971/1‑146 (MQ=255)

                                                        tttATAAAGCGCGGCGGCTTTCGCTTCCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGACCTGCGGCCTGCACACCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGtttt                                                                                               <  1:2678688/150‑1 (MQ=255)

                                                           ataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACTACCGACTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCt                                                                                            <  1:484420/150‑1 (MQ=255)

                                                           ataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTTCGCTGAGGCGAATAGGCCGCGGGTGCCGCAGgtttttt                                                                                            >  1:749287/1‑148 (MQ=255)

                                                            taAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGGCGCAGTTTTTCTg                                                                                           >  2:3564956/1‑150 (MQ=255)

                                                             aaaGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGt                                                                                          <  1:979065/150‑1 (MQ=255)

                                                             aaaGCGCGGCGGCTTCCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATACATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGt                                                                                          <  1:2330488/150‑1 (MQ=255)

                                                              aaGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGGATAGACCGCGGCAGCCGCAGGTTTTCTgcc                                                                                         >  2:1862638/1‑148 (MQ=255)

                                                                   cggcggCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCACCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCg                                                                                    <  1:1024810/150‑1 (MQ=255)

                                                                      cggcTTTCGCTTTCTGCTTTTCTCCCTCATTCCCAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCa                                                                                 <  1:1899145/150‑1 (MQ=255)

                                                                       ggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCAc                                                                                <  1:1546925/150‑1 (MQ=255)

                                                                          tttCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCCGCGTCAcccc                                                                             >  1:1610445/1‑149 (MQ=255)

                                                                                 ttctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTtcatc                                                                      >  1:2208411/7‑150 (MQ=255)

                                                                                 ttctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTATTTCTGTCCGGCGCCCCCCCGTtcatc                                                                      >  1:2128183/7‑150 (MQ=255)

                                                                                   ctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCaa                                                                    <  1:1409986/146‑1 (MQ=255)

                                                                                     gcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTGACCCCGTTCATCaaaa                                                                  >  1:244248/3‑150 (MQ=255)

                                                                                         ttcttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGAc                                                              <  1:2955880/150‑1 (MQ=255)

                                                                                         ttcttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGGTCATCAAAAAGAc                                                              >  2:2383536/1‑150 (MQ=255)

                                                                                          tcttcCTCATTCACAGCCATCCGCCATTCATAAAACGAGACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGAcc                                                             <  1:2403065/150‑1 (MQ=255)

                                                                                           cttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGGCCGCGGCAGTCGCAGGTTTTCTGGCCCGCGTCACCCAGTTCCTCAAAAAGACCa                                                            >  1:3039561/1‑150 (MQ=255)

                                                                                            ttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGGCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCAt                                                           >  1:3960433/1‑150 (MQ=255)

                                                                                              ccTCATCCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATcc                                                         <  1:3672350/150‑1 (MQ=255)

                                                                                               cTCATTCACACCCATCCGCCTTTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCca                                                        <  1:673493/150‑1 (MQ=255)

                                                                                                 cATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTGCGCTGAGCCGAAAAGACCGCGGCAGCCCCAGTGTTTCTGTCCGGCGTCTCCCAGGTCTTCCAAAAGACCATCccca                                                      >  1:641416/1‑150 (MQ=255)

                                                                                                 cATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGTGCCGAATAGACCGCGGCAGCCGCAGTTTTCCTGTCCGGCGTCACCCAGGTCATCAAAAAGACCATCcaca                                                      >  2:1423086/1‑150 (MQ=255)

                                                                                                   ttCACAGCCATCCGCCATTCATAAAACGAGACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑cc                                                   <  2:2814208/150‑1 (MQ=255)

                                                                                                   ttCACAGCCAACCCCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATC‑AAAAGACCATCCACA‑ccc                                                  <  1:2287713/150‑1 (MQ=255)

                                                                                                    tcccaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑ccc                                                  <  1:79559/147‑1 (MQ=255)

                                                                                                     cacaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑cccc                                                 >  1:192875/1‑149 (MQ=255)

                                                                                                     cacaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCg                                                 >  2:673803/1‑150 (MQ=255)

                                                                                                        aGCCATCCGCCATTCATAAAACGAAACGAGTCCTGGGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTaa                                              <  1:552751/150‑1 (MQ=255)

                                                                                                         gCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCCGTTTTTCTGTCCGGCGGCACCCAGGTCATCAAAAAGGCCATCCCCA‑ccccgaaa                                             >  2:1636790/1‑145 (MQ=255)

                                                                                                           cATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGa                                           >  2:571892/1‑150 (MQ=255)

                                                                                                           cATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTTTGTCCGGGGCCACCCAGTTCACCAAAAAGAGCATCCACA‑ccccccaaga                                           >  1:1760487/1‑143 (MQ=255)

                                                                                                            acccGCCATTCATAAAACGAACCGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGAt                                          <  2:2948276/148‑1 (MQ=255)

                                                                                                                   attCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCCGTTCATCAACAAGACCATCCACA‑CCCCCAAAGGTACAAGCa                                   >  2:3152027/3‑150 (MQ=255)

                                                                                                                   attCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCa                                   <  1:2825828/148‑1 (MQ=255)

                                                                                                                    ttCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTGTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCCCA‑CCCGGAAAGGTACCAGCaa                                  >  2:3388157/2‑150 (MQ=255)

                                                                                                                       aTAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACg                               <  1:1963505/150‑1 (MQ=255)

                                                                                                                         aaaaCGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAATAATACAAGCAAACGtt                             >  1:819625/1‑150 (MQ=255)

                                                                                                                         aaaaCGAAACGAGTCCTGCGGCCTGCACAGCCGCCTATCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGtt                             <  1:1859550/150‑1 (MQ=255)

                                                                                                                          aaacgaaacgAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTTCGGCCTGACCCCGATCATCAAAAAGACCATCCACACCCCGAAAAGA‑ACCAGCCAACGttt                            >  1:1664432/1‑150 (MQ=255)

                                                                                                                          aaacgaaacgAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGACGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCCTAAAGATACAAGCAAACGttt                            >  1:3520759/1‑150 (MQ=255)

                                                                                                                           aacgaaacgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCCGTTCCTCACAAAGACCATCCACA‑CCCCCAAAGATACAAGCAAACGTTTc                           >  2:39731/1‑150 (MQ=255)

                                                                                                                           aacgaaacgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGGTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTc                           >  2:2002933/1‑150 (MQ=255)

                                                                                                                             cGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCACTTCATCAAAAAGGCCATCCACA‑CCCGGAGACATACAAGCAAACGTTTCAt                         >  2:3797679/1‑150 (MQ=255)

                                                                                                                               aaaCGAGCCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCACAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAg                       <  1:1719671/150‑1 (MQ=255)

                                                                                                                                 acgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCCGTTCATCAAAAAGACCAACCACA‑CCCGTAAAGAGACAAGCAAACGGTTCATAGaa                     >  1:280533/4‑150 (MQ=255)

                                                                                                                                  cgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGaaa                    <  1:114237/148‑1 (MQ=255)

                                                                                                                                  cgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAAACCAACCACA‑CCCGGAAAAGTACAAGCAAAAGTTTCAAAGaaa                    >  1:3454865/3‑150 (MQ=255)

                                                                                                                                   gaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGGCCATCCACA‑CCCGTAAAGATACAAGCAAACGGTTCATAGaaaa                   >  2:2249432/2‑150 (MQ=255)

                                                                                                                                   gaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGaaaa                   >  2:3465666/2‑150 (MQ=255)

                                                                                                                                        ctgcgGCCGGCCCAGCCGCCTTTCTTTGGTTTGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCAACAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTATCATAGAAAAACATc              <  1:2516147/148‑1 (MQ=255)

                                                                                                                                         tgcgGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCCGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATcc             >  1:386572/2‑150 (MQ=255)

                                                                                                                                          gcgGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATccc            <  1:3139850/150‑1 (MQ=255)

                                                                                                                                           cgGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCAACCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCt           <  1:3890064/150‑1 (MQ=255)

                                                                                                                                             gCCTGCACAGCCGCCTGTCTTTGGTATGTACGCTGAGCGGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTcc         <  1:863831/150‑1 (MQ=255)

                                                                                                                                              ccTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCg        >  1:1273672/1‑150 (MQ=255)

                                                                                                                                                  cacaGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGcttc    <  1:699715/150‑1 (MQ=255)

                                                                                                                                                    ccgccgCCTTTCTTTGGTATGTACGCTGAGCCGAGTAGACCGCGGCAGCCGCAGTCTTTCTGACCGGCGTCACCCAGTTCAACAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGcttctt  <  2:505310/150‑1 (MQ=255)

TGCGGGCCAGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACA‑CCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTT  >  CP006881/3724894‑3725191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A